BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921112|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_G09.
         (444 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=cul...    28   1.5  
sp|P97772|GRM1_MOUSE Metabotropic glutamate receptor 1 OS=Mus mu...    30   4.5  
sp|Q4PHA8|BRO1_USTMA Vacuolar protein-sorting protein BRO1 OS=Us...    29   7.7  
sp|Q9NPP4|NLRC4_HUMAN NLR family CARD domain-containing protein ...    29   10.0 
sp|Q187T6|MUTS_CLOD6 DNA mismatch repair protein mutS OS=Clostri...    29   10.0 
sp|P23385|GRM1_RAT Metabotropic glutamate receptor 1 OS=Rattus n...    29   10.0 

>sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=culD
           PE=3 SV=1
          Length = 802

 Score = 28.1 bits (61), Expect(2) = 1.5
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -3

Query: 283 ILLNIKCQRDGDILAWEL*AALYCILLNINQFLEHPVVILKDGN 152
           +L +I+C+R+GD +  +L  +L  +L ++N + +  +  +K+ N
Sbjct: 207 LLYSIRCEREGDEIDRDLIHSLVKMLSSLNIYTKFEIEFIKETN 250



 Score = 21.9 bits (45), Expect(2) = 1.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 98  VEGNVRTQELTCIMYDVILCERV 30
           +EGN +  E+   MY   +CER+
Sbjct: 255 MEGNSKINEIETPMYLKYVCERL 277


>sp|P97772|GRM1_MOUSE Metabotropic glutamate receptor 1 OS=Mus
            musculus GN=Grm1 PE=2 SV=2
          Length = 1199

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 80   SLHCPPPAPKHLLFQP--LASFRESQIS 157
            SL+ PPP P+HL   P  L++FRE  IS
Sbjct: 1070 SLYPPPPPPQHLQMLPLQLSTFREEPIS 1097


>sp|Q4PHA8|BRO1_USTMA Vacuolar protein-sorting protein BRO1
           OS=Ustilago maydis GN=BRO1 PE=3 SV=1
          Length = 1076

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 287 HHRPPHPQDHSEWNAAHNG*EANMVISPSMIPTAFPNLK 403
           H  PP P  H+ + +A+ G  A   +SP   P A P ++
Sbjct: 813 HPAPPTPHRHTSYASAYGGAGAPGPLSPGPPPAALPGVR 851


>sp|Q9NPP4|NLRC4_HUMAN NLR family CARD domain-containing protein 4
           OS=Homo sapiens GN=NLRC4 PE=1 SV=2
          Length = 1024

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -2

Query: 212 YSPKYKPVSRASCSYFKGRKFGSL*N*QEAEREDALELVEGNVRTQELTCIMYDVILCER 33
           + PKYK   ++   Y  GR+  SL    E E     E+ +GN   Q++  I  D+     
Sbjct: 435 FKPKYKFFHKSFQEYTAGRRLSSLLTSHEPE-----EVTKGNGYLQKMVSIS-DITSTYS 488

Query: 32  VLLKFICSLS 3
            LL++ C  S
Sbjct: 489 SLLRYTCGSS 498


>sp|Q187T6|MUTS_CLOD6 DNA mismatch repair protein mutS
           OS=Clostridium difficile (strain 630) GN=mutS PE=3 SV=1
          Length = 949

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 187 LEHPVVILKDGNLALSETSKRLKE 116
           LE P + +KDGN+  S+ S  LKE
Sbjct: 416 LEEPTITIKDGNIIKSDFSDELKE 439


>sp|P23385|GRM1_RAT Metabotropic glutamate receptor 1 OS=Rattus
            norvegicus GN=Grm1 PE=1 SV=1
          Length = 1199

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 80   SLHCPPPAPKHLLFQP--LASFRESQIS 157
            SL+ PPP P+HL   P  L++F+E  IS
Sbjct: 1071 SLYPPPPPPQHLQMLPLHLSTFQEESIS 1098

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921112|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_G09.
         (444 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******