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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921116
Clone id YMU001_000145_H07
Library
Length 442
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000145_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCGAGTAGGCGCGGGCAGGCAGGCAGGTTGCGGCCGGATGGGGACCACCGGTATGAGCA
CCGAACGCGGTGAGTTTGGCGTTGTTAATTGCCTTGCTGAAATTTGCCAGTGGGAGTCCG
GGCGGTGTGGAATGAGTTCCTCCTTAGAAAACAAAGGTCAACAGCCTATAAATAGGGTTC
TTACCCACGGTTTCAGTAGAAAGGTTTGAGCATTTAATGCATGAAATTCTACACACGCAC
ACCCCTAAACACACTTCCCTGCTGCAGAACACAAAGAAATAGTAGCCACAAACTCTCAAA
AAAATTCAAAACTAATTAAGCAATTATTCTCACATGAGATACCCAATTGGAGCATAGGAG
GATGCATCGTGAAGCTCATGACACTGGATACGGATGCACATAAGTGAGGAAGCAAGATAA
TGCCGTACTTGGGAGTAATGGA
■■Homology search results ■■ -
sp_hit_id Q27707
Definition sp|Q27707|SYI_ANTLO Isoleucyl-tRNA synthetase (Fragment) OS=Antonospora locustae
Align length 25
Score (bit) 30.8
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921116|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_H07.
         (442 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q27707|SYI_ANTLO Isoleucyl-tRNA synthetase (Fragment) OS=Anto...    31   2.6  
sp|Q3UVC0|KSR2_MOUSE Kinase suppressor of Ras 2 OS=Mus musculus ...    30   3.4  
sp|Q6VAB6|KSR2_HUMAN Kinase suppressor of Ras 2 OS=Homo sapiens ...    30   3.4  
sp|O26800|VORB_METTH Ketoisovalerate oxidoreductase subunit vorB...    30   5.9  
sp|P31213|S5A2_HUMAN 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=...    29   7.5  
sp|Q28UT4|RL15_JANSC 50S ribosomal protein L15 OS=Jannaschia sp....    29   7.5  
sp|P18887|XRCC1_HUMAN DNA repair protein XRCC1 OS=Homo sapiens G...    29   7.7  
sp|Q6LUL1|SYI_PHOPR Isoleucyl-tRNA synthetase OS=Photobacterium ...    29   9.8  
sp|Q28892|S5A2_MACFA 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=...    29   9.8  
sp|Q16AC4|RL15_ROSDO 50S ribosomal protein L15 OS=Roseobacter de...    29   9.8  
sp|P36422|SYI_TETTH Isoleucyl-tRNA synthetase OS=Tetrahymena the...    29   10.0 
sp|O84022|SYI_CHLTR Isoleucyl-tRNA synthetase OS=Chlamydia trach...    29   10.0 
sp|Q9PL20|SYI_CHLMU Isoleucyl-tRNA synthetase OS=Chlamydia murid...    29   10.0 
sp|Q28256|GP1BA_CANFA Platelet glycoprotein Ib alpha chain OS=Ca...    29   10.0 
sp|Q8N693|ESX1_HUMAN Homeobox protein ESX1 OS=Homo sapiens GN=ES...    29   10.0 

>sp|Q27707|SYI_ANTLO Isoleucyl-tRNA synthetase (Fragment)
           OS=Antonospora locustae PE=3 SV=1
          Length = 628

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 306 NFFESLWLLFLCVLQQGSVFRGVRV 232
           +F ES+W +F  + ++GSV+RG RV
Sbjct: 70  SFMESIWHIFKMLYEKGSVYRGHRV 94


>sp|Q3UVC0|KSR2_MOUSE Kinase suppressor of Ras 2 OS=Mus musculus
           GN=Ksr2 PE=2 SV=2
          Length = 959

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 133 IPHRPDSHWQISARQLTTPNSPRSVL----IPVVPIRPQPAC 20
           +P++PDS    S+   +TP+SP   L     P  P+ P P C
Sbjct: 521 VPYQPDSSSNPSSTTSSTPSSPAPPLPPSATPPSPLHPSPQC 562


>sp|Q6VAB6|KSR2_HUMAN Kinase suppressor of Ras 2 OS=Homo sapiens
           GN=KSR2 PE=1 SV=2
          Length = 950

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 133 IPHRPDSHWQISARQLTTPNSPRSVL----IPVVPIRPQPAC 20
           +P++PDS    S+   +TP+SP   L     P  P+ P P C
Sbjct: 511 VPYQPDSSSNPSSTTSSTPSSPAPPLPPSATPPSPLHPSPQC 552


>sp|O26800|VORB_METTH Ketoisovalerate oxidoreductase subunit vorB
           OS=Methanobacterium thermoautotrophicum GN=vorB PE=3
           SV=3
          Length = 352

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 157 PLFSKEELIPHRPDSHWQISARQLTTPNSPRSVLI 53
           PL   EE + HRPD+ W +   + T  N   S+ +
Sbjct: 178 PLRFPEEAVEHRPDTSWAVCGNRETMKNLVTSIFL 212


>sp|P31213|S5A2_HUMAN 3-oxo-5-alpha-steroid 4-dehydrogenase 2
           OS=Homo sapiens GN=SRD5A2 PE=1 SV=1
          Length = 254

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 92  AINNAKLTAFGAHTGGPHPAATCLPARA 9
           A+  AK + +G HT    PAAT LPARA
Sbjct: 24  ALYVAKPSGYGKHTESLKPAATRLPARA 51


>sp|Q28UT4|RL15_JANSC 50S ribosomal protein L15 OS=Jannaschia sp.
           (strain CCS1) GN=rplO PE=3 SV=1
          Length = 157

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 3   RVGAGRQAGCGRMGTTGMSTERGEFGVVNCLAEICQWESGRCGMSSSLENKGQQPINR 176
           RVG G  +G G+MG  G+  ++   GV      I  +E G+  +   L  +G    NR
Sbjct: 18  RVGRGPGSGTGKMGGRGIKGQKSRSGVA-----INAYEGGQMPLYQRLPKRGFNKPNR 70


>sp|P18887|XRCC1_HUMAN DNA repair protein XRCC1 OS=Homo sapiens
           GN=XRCC1 PE=1 SV=1
          Length = 633

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 103 ISARQLTTPNSPRSVLIPVVPIRPQPACLPAPTR 2
           ++  +  TP+ P + L P VP RP+   LPAPTR
Sbjct: 250 LNQEEKKTPSKPPAQLSPSVPKRPK---LPAPTR 280


>sp|Q6LUL1|SYI_PHOPR Isoleucyl-tRNA synthetase OS=Photobacterium
           profundum GN=ileS PE=3 SV=1
          Length = 954

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 138 SSLENKGQQPINRVLTHGF 194
           SS+  KG+ P N+VLTHGF
Sbjct: 587 SSVAMKGKAPYNQVLTHGF 605


>sp|Q28892|S5A2_MACFA 3-oxo-5-alpha-steroid 4-dehydrogenase 2
          OS=Macaca fascicularis GN=SRD5A2 PE=1 SV=1
          Length = 254

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 80 AKLTAFGAHTGGPHPAATCLPARA 9
          AK + +G HT    PAAT LPARA
Sbjct: 28 AKPSGYGKHTESLKPAATRLPARA 51


>sp|Q16AC4|RL15_ROSDO 50S ribosomal protein L15 OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=rplO PE=3
           SV=1
          Length = 160

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 3   RVGAGRQAGCGRMGTTGMSTERGEFGVVNCLAEICQWESGRCGMSSSLENKGQQPINR 176
           RVG G  +G G+MG  G+  ++   GV      I  +E G+  +   L  +G    NR
Sbjct: 18  RVGRGPGSGTGKMGGRGIKGQKSRSGVA-----IKGYEGGQMPLYQRLPKRGFNKPNR 70
tr_hit_id Q4RM98
Definition tr|Q4RM98|Q4RM98_TETNG Chromosome 10 SCAF15019, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 83
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921116|Adiantum capillus-veneris mRNA, clone:
YMU001_000145_H07.
         (442 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4RM98|Q4RM98_TETNG Chromosome 10 SCAF15019, whole genome sho...    35   1.4  
tr|A8HTB4|A8HTB4_BOMMO Nicotinic acetylcholine receptor alpha 3 ...    34   3.1  
tr|B4SIE1|B4SIE1_STRM5 Putative uncharacterized protein OS=Steno...    33   5.4  
tr|Q5KTW1|Q5KTW1_TRIVA Isoleucyl tRNA synthetase (Fragment) OS=T...    33   7.0  
tr|A2FF46|A2FF46_TRIVA Isoleucyl-tRNA synthetase family protein ...    33   7.0  
tr|B8PF68|B8PF68_9APHY Predicted protein OS=Postia placenta Mad-...    33   7.0  

>tr|Q4RM98|Q4RM98_TETNG Chromosome 10 SCAF15019, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00032140001 PE=4 SV=1
          Length = 836

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 29/83 (34%), Positives = 35/83 (42%)
 Frame = -1

Query: 253 CV*GCACVEFHALNAQTFLLKPWVRTLFIGC*PLFSKEELIPHRPDSHWQISARQLTTPN 74
           CV  C CV  HA  A   LL        + C   FSK  +   R DS W  S+   +TP 
Sbjct: 719 CVCVCVCVCGHAFIALCGLLAT------VKCFIKFSKRRVYFVRKDSIWSRSSSPSSTPA 772

Query: 73  SPRSVLIPVVPIRPQPACLPAPT 5
           SP S         P PA L +P+
Sbjct: 773 SPPS---------PSPAALSSPS 786


>tr|A8HTB4|A8HTB4_BOMMO Nicotinic acetylcholine receptor alpha 3
           subunit OS=Bombyx mori PE=2 SV=1
          Length = 515

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = -1

Query: 310 FEFF*EFVATISLCSAAGKCV*GCACVEFHALNAQTFLLKPWVRTLFIGC*PLFSKEELI 131
           F  F   + T S+C            +  H  + QT  + PWVR +FI   P        
Sbjct: 308 FVLFTMILDTFSICVTV-------VVLNVHFRSPQTHTMSPWVRRVFIHVLPRLLVMRRP 360

Query: 130 PHRPDSHWQISARQLTTPNSP-RSVLIPVVPIRPQPACLPAPT 5
            +R D H    A  ++   +P   V    VP  P+P   PAPT
Sbjct: 361 HYRLDPHRSRFAGLVSGVEAPWEEVPHAEVPAPPRPPRTPAPT 403


>tr|B4SIE1|B4SIE1_STRM5 Putative uncharacterized protein
           OS=Stenotrophomonas maltophilia (strain R551-3)
           GN=Smal_0441 PE=3 SV=1
          Length = 122

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -1

Query: 100 SARQLTTPNSPRSVLIPVVPIRPQPACLPAP 8
           +A + TT  +P+ V+ PV P RPQP  LP+P
Sbjct: 26  TATRSTTTVAPQPVVPPVQPARPQPQVLPSP 56


>tr|Q5KTW1|Q5KTW1_TRIVA Isoleucyl tRNA synthetase (Fragment)
           OS=Trichomonas vaginalis PE=4 SV=1
          Length = 676

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 369 RCILLCSNWVSHVRIIA*LVLNFFESLWLLFLCVLQQGSVFRGVRV 232
           R +  C  W+  V     + + F ES+W +F  + +Q +V+ GV+V
Sbjct: 83  RVVRRCGRWIDFVNSYKSMDVTFMESVWWVFKQLWEQDNVYCGVKV 128


>tr|A2FF46|A2FF46_TRIVA Isoleucyl-tRNA synthetase family protein
           OS=Trichomonas vaginalis G3 GN=TVAG_024690 PE=4 SV=1
          Length = 1069

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 369 RCILLCSNWVSHVRIIA*LVLNFFESLWLLFLCVLQQGSVFRGVRV 232
           R +  C  W+  V     + + F ES+W +F  + +Q +V+ GV+V
Sbjct: 134 RVVRRCGRWIDFVNSYKSMDVTFMESVWWVFKQLWEQDNVYCGVKV 179


>tr|B8PF68|B8PF68_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_97639 PE=4 SV=1
          Length = 760

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 121 PDSHWQISARQLTTPNSPRSVLIPVVPIRPQPACLP 14
           P  H++ S+  LT  N+P  V  P  P+RP+P+ +P
Sbjct: 615 PVRHYEKSSDLLTPANTPIRVRSPAAPVRPEPSPVP 650