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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921133
Clone id YMU001_000146_B05
Library
Length 172
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAAGATTGTAATCACGAAACAGTAGTTGTATCTTTGCATCGCGATCTCTTTCAGTTTCT
CTAAAGGCATCAGCCTCTGCCTGTTGTTTACCAATGCTGACACATTCCTGATTATACTTC
TTGTCGAGAATGTCTATTTGTGTGGTGTAATCTGCTGCATCTCGCTCTCCTT
■■Homology search results ■■ -
sp_hit_id Q9SL02
Definition sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50 OS=Arabidopsis thaliana
Align length 55
Score (bit) 35.4
E-value 0.089
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921133|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_B05.
         (172 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50 OS=Arabidopsis th...    35   0.089
sp|Q8NYF5|ESAA_STAAW Protein esaA OS=Staphylococcus aureus (stra...    29   8.3  
sp|Q6GCI9|ESAA_STAAS Protein esaA OS=Staphylococcus aureus (stra...    29   8.3  
sp|Q6GK28|ESAA_STAAR Protein esaA OS=Staphylococcus aureus (stra...    29   8.3  
sp|Q7A7S3|ESAA_STAAN Protein esaA OS=Staphylococcus aureus (stra...    29   8.3  
sp|Q99WU3|ESAA_STAAM Protein esaA OS=Staphylococcus aureus (stra...    29   8.3  
sp|P0C049|ESAA_STAAE Protein esaA OS=Staphylococcus aureus (stra...    29   8.3  
sp|Q5HJ90|ESAA_STAAC Protein esaA OS=Staphylococcus aureus (stra...    29   8.3  

>sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50 OS=Arabidopsis
           thaliana GN=RAD50 PE=1 SV=2
          Length = 1316

 Score = 35.4 bits (80), Expect = 0.089
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ER+  D  T I  L        + I K Q EA+A    + +RD+ IQ +F  YNL
Sbjct: 327 EREMVDTETTISSLHNAKTNYMLEISKLQTEAEAHMLLKNERDSTIQNIFFHYNL 381


>sp|Q8NYF5|ESAA_STAAW Protein esaA OS=Staphylococcus aureus (strain
           MW2) GN=esaA PE=3 SV=1
          Length = 1009

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 161 DAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYN 6
           D  D + Q+D  +K+Y  E   + K   + DA ++  +D+   +QLLF   N
Sbjct: 500 DIKDQSVQLDTSNKEYKVEVNGVAK--LKKDAEKDFLKDKTMHLQLLFGQAN 549


>sp|Q6GCI9|ESAA_STAAS Protein esaA OS=Staphylococcus aureus (strain
           MSSA476) GN=esaA PE=3 SV=1
          Length = 1009

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 161 DAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYN 6
           D  D + Q+D  +K+Y  E   + K   + DA ++  +D+   +QLLF   N
Sbjct: 500 DIKDQSVQLDTSNKEYKVEVNGVAK--LKKDAEKDFLKDKTMHLQLLFGQAN 549


>sp|Q6GK28|ESAA_STAAR Protein esaA OS=Staphylococcus aureus (strain
           MRSA252) GN=esaA PE=3 SV=1
          Length = 1009

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 161 DAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYN 6
           D  D + Q+D  +K+Y  E   + K   + DA ++  +D+   +QLLF   N
Sbjct: 500 DIKDQSVQLDTSNKEYKVEVNGVAK--LKKDAEKDFLKDKTMHLQLLFGQAN 549


>sp|Q7A7S3|ESAA_STAAN Protein esaA OS=Staphylococcus aureus (strain
           N315) GN=esaA PE=3 SV=1
          Length = 1009

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 161 DAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYN 6
           D  D + Q+D  +K+Y  E   + K   + DA ++  +D+   +QLLF   N
Sbjct: 500 DIKDQSVQLDTSNKEYKVEVNGVAK--LKKDAEKDFLKDKTMHLQLLFGQAN 549


>sp|Q99WU3|ESAA_STAAM Protein esaA OS=Staphylococcus aureus (strain
           Mu50 / ATCC 700699) GN=esaA PE=3 SV=1
          Length = 1009

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 161 DAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYN 6
           D  D + Q+D  +K+Y  E   + K   + DA ++  +D+   +QLLF   N
Sbjct: 500 DIKDQSVQLDTSNKEYKVEVNGVAK--LKKDAEKDFLKDKTMHLQLLFGQAN 549


>sp|P0C049|ESAA_STAAE Protein esaA OS=Staphylococcus aureus (strain
           Newman) GN=esaA PE=3 SV=2
          Length = 1009

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 161 DAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYN 6
           D  D + Q+D  +K+Y  E   + K   + DA ++  +D+   +QLLF   N
Sbjct: 500 DIKDQSVQLDTSNKEYKVEVNGVAK--LKKDAEKDFLKDKTMHLQLLFGQAN 549


>sp|Q5HJ90|ESAA_STAAC Protein esaA OS=Staphylococcus aureus (strain
           COL) GN=esaA PE=3 SV=1
          Length = 1009

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 161 DAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYN 6
           D  D + Q+D  +K+Y  E   + K   + DA ++  +D+   +QLLF   N
Sbjct: 500 DIKDQSVQLDTSNKEYKVEVNGVAK--LKKDAEKDFLKDKTMHLQLLFGQAN 549
tr_hit_id A8IE27
Definition tr|A8IE27|A8IE27_TRITU DNA repair protein Rad50 OS=Triticum turgidum
Align length 55
Score (bit) 40.4
E-value 0.044
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921133|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_B05.
         (172 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IE27|A8IE27_TRITU DNA repair protein Rad50 OS=Triticum turg...    40   0.044
tr|A8IE24|A8IE24_TRITU DNA repair protein Rad50 OS=Triticum turg...    40   0.044
tr|A8IE20|A8IE20_AEGTA DNA repair protein Rad50 OS=Aegilops taus...    40   0.044
tr|A8IE14|A8IE14_TRITU DNA repair protein Rad50 OS=Triticum turg...    40   0.044
tr|A8IE11|A8IE11_TRITU DNA repair protein Rad50 OS=Triticum turg...    40   0.044
tr|A8IE08|A8IE08_AEGTA DNA repair protein Rad50 OS=Aegilops taus...    40   0.044
tr|A8IE00|A8IE00_TRIMO DNA repair protein Rad50 OS=Triticum mono...    40   0.044
tr|Q7Y239|Q7Y239_ORYSJ Os02g0497500 protein OS=Oryza sativa subs...    40   0.058
tr|B8AIA2|B8AIA2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|A3A742|A3A742_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.058
tr|A8IE16|A8IE16_TRIMO DNA repair protein Rad50 OS=Triticum mono...    39   0.098
tr|B6G0A3|B6G0A3_9CLOT Putative uncharacterized protein OS=Clost...    35   1.4  
tr|Q56Y45|Q56Y45_ARATH Putative RAD50 DNA repair protein (Fragme...    35   1.4  
tr|B5HA46|B5HA46_STRPR Secreted protein OS=Streptomyces pristina...    33   7.0  
tr|Q54123|Q54123_STAEP PepB OS=Staphylococcus epidermidis GN=pep...    33   9.2  

>tr|A8IE27|A8IE27_TRITU DNA repair protein Rad50 OS=Triticum
           turgidum PE=4 SV=1
          Length = 1316

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ER+  D   +  +L +  N     IGK QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 EREMNDEYAKSSLLSETINDSTREIGKLQAEADAHMSVKHERDSAIRTIFNKHNL 381


>tr|A8IE24|A8IE24_TRITU DNA repair protein Rad50 OS=Triticum
           turgidum PE=4 SV=1
          Length = 1316

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ER+  D   +  +L +  N     IGK QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 EREMNDEYAKSSLLSETINDSTREIGKLQAEADAHMSVKHERDSAIRTIFNKHNL 381


>tr|A8IE20|A8IE20_AEGTA DNA repair protein Rad50 OS=Aegilops
           tauschii PE=4 SV=1
          Length = 1316

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ER+  D   +  +L +  N     IGK QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 EREMNDEYAKSSLLSETINDSTREIGKLQAEADAHMSVKHERDSAIRTIFNKHNL 381


>tr|A8IE14|A8IE14_TRITU DNA repair protein Rad50 OS=Triticum
           turgidum PE=2 SV=1
          Length = 1316

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ER+  D   +  +L +  N     IGK QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 EREMNDEYAKSSLLSETINDSTREIGKLQAEADAHMSVKHERDSAIRTIFNKHNL 381


>tr|A8IE11|A8IE11_TRITU DNA repair protein Rad50 OS=Triticum
           turgidum PE=2 SV=1
          Length = 1316

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ER+  D   +  +L +  N     IGK QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 EREMNDEYAKSSLLSETINDSTREIGKLQAEADAHMSVKHERDSAIRTIFNKHNL 381


>tr|A8IE08|A8IE08_AEGTA DNA repair protein Rad50 OS=Aegilops
           tauschii PE=2 SV=1
          Length = 1316

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ER+  D   +  +L +  N     IGK QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 EREMNDEYAKSSLLSETINDSTREIGKLQAEADAHMSVKHERDSAIRTIFNKHNL 381


>tr|A8IE00|A8IE00_TRIMO DNA repair protein Rad50 OS=Triticum
           monococcum PE=2 SV=1
          Length = 1316

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ER+  D   +  +L +  N     IGK QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 EREMNDEYAKSSLLSETINDSTREIGKLQAEADAHMSVKHERDSAIRTIFNKHNL 381


>tr|Q7Y239|Q7Y239_ORYSJ Os02g0497500 protein OS=Oryza sativa subsp.
           japonica GN=rad50 PE=2 SV=2
          Length = 1316

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ERD  D  T    L K  N      G+ QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 ERDVDDENTTSSFLSKAINDLMRETGRLQAEADAHMSVKHERDSAIRKIFTKHNL 381


>tr|B8AIA2|B8AIA2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07303 PE=4 SV=1
          Length = 1323

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ERD  D  T    L K  N      G+ QAEADA    + +RD+ I+ +F  +NL
Sbjct: 327 ERDVDDENTTSSFLSKAINDLMRETGRLQAEADAHMSVKHERDSAIRKIFTKHNL 381


>tr|A3A742|A3A742_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006614 PE=4 SV=1
          Length = 1526

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 167 ERDAADYTTQIDILDKKYNQECVSIGKQQAEADAFRETERDRDAKIQLLFRDYNL 3
           ERD  D  T    L K  N      G+ QAEADA    + +RD+ I+ +F  +NL
Sbjct: 355 ERDVDDENTTSSFLSKAINDLMRETGRLQAEADAHMSVKHERDSAIRKIFTKHNL 409