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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921134
Clone id YMU001_000146_B06
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTGTAGTGATCCACAGAAAAACCACCTGGGACTACTTGTTGTCGTCTTATTGAAGTGCC
AGTACTATGCGAGACTTTAGAGAGCGCACAAGCCTCTGGATTTGCTTGTCAGCAGAACCT
ACCCTTTCCTCATTCATTCTTTCAATTTGCTGAAGAAGAGGAAGAAGCTTCTCATTCAAG
GAGCGAAACTCCTCGCTGGACCCAAGGAATGACTTGACATTGTCCATGTTCTCACCTCTG
TCTCTTAGGTTATCAGGCACTTGAAATTCCTCATCATAGTGGATGAACAGAATGTTCAAA
GCATGCTCAATTATGAGGAGATGGATTGCAATGACAGATTCCCTATTTCCTGCTGCACTG
CACATCTCAACCATAGCTACATATCTCCTCTTCCTTATTCCTTCTGTTTCCCCAGGATGC
TCCACTCGGCTATATGCCTTTATAATATCATCAACCTCATGGCGGGATAGCTCATTTACA
TCTTGCACCTTAGCCAACAGTAATGACCTTTGAGTACCTGCAGGTAATATCTCAAGGGCG
■■Homology search results ■■ -
sp_hit_id Q6FJ38
Definition sp|Q6FJ38|ATG16_CANGA Autophagy protein 16 OS=Candida glabrata
Align length 57
Score (bit) 33.9
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921134|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_B06.
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FJ38|ATG16_CANGA Autophagy protein 16 OS=Candida glabrata G...    34   0.52 
sp|Q7VGX8|SYI_HELHP Isoleucyl-tRNA synthetase OS=Helicobacter he...    30   7.5  
sp|A1T105|RECF_MYCVP DNA replication and repair protein recF OS=...    30   7.5  
sp|Q9Y7S0|YQO1_SCHPO UPF0612 protein C569.01c OS=Schizosaccharom...    30   9.8  
sp|A2BZV8|YCF3_PROM1 Photosystem I assembly protein ycf3 OS=Proc...    30   9.8  
sp|O74909|MEU23_SCHPO Meiotic expression up-regulated protein 23...    30   9.8  
sp|Q12726|HOSM_YARLI Homocitrate synthase, mitochondrial OS=Yarr...    30   9.8  

>sp|Q6FJ38|ATG16_CANGA Autophagy protein 16 OS=Candida glabrata
           GN=ATG16 PE=3 SV=1
          Length = 108

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 281 HYDEEFQVP-DNLRDRGENMDNVKSFLGSSEEFRSLNEKLLPLLQQIERMNEERVGS 114
           +Y E F+VP D   + G+ M   ++  G   E R L E+L    + +ER+N+E +G+
Sbjct: 11  NYCELFEVPVDGRSNDGDAMLLQEALRGKDNEIRMLEERLAVSSKNVERLNDELLGA 67


>sp|Q7VGX8|SYI_HELHP Isoleucyl-tRNA synthetase OS=Helicobacter
           hepaticus GN=ileS PE=3 SV=1
          Length = 930

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 261 LKFLIIVDEQNVQSMLNYEEMDCNDRFPISCCTAHLNHSY 380
           ++FL+    QN Q M+  +E+D  DR+ +S C    + +Y
Sbjct: 671 IRFLLANASQNSQDMVEKDELDVIDRWILSVCDRVFDEAY 710


>sp|A1T105|RECF_MYCVP DNA replication and repair protein recF
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=recF PE=3 SV=1
          Length = 386

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -2

Query: 503 LLLAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKRRYVAMVEMCSAAGNRE 339
           L+ A+VQ VNEL+     ++ KAY  +        IR R  V +VE  +AAGN +
Sbjct: 197 LISARVQLVNELA----PEVEKAYQLLAPGSRPAAIRYRSGVDVVEAEAAAGNSD 247


>sp|Q9Y7S0|YQO1_SCHPO UPF0612 protein C569.01c
           OS=Schizosaccharomyces pombe GN=SPCC569.01c PE=2 SV=1
          Length = 323

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 497 LAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKR 387
           + +V+D++ELS+ +    +K Y  +  P ET  ++KR
Sbjct: 266 IERVEDIDELSKEQCVQYLKGYGIMFSPAETIKLKKR 302


>sp|A2BZV8|YCF3_PROM1 Photosystem I assembly protein ycf3
           OS=Prochlorococcus marinus (strain NATL1A) GN=ycf3 PE=3
           SV=1
          Length = 173

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 281 HYDEEFQVPDNLRDRGENMDNVK-SFLGSSEEFRSLN 174
           +Y+E  ++ DN  DRGE + N+   ++ + +E R+LN
Sbjct: 57  YYEESLKLEDNQVDRGETLKNMAIIYMSNGDEERALN 93


>sp|O74909|MEU23_SCHPO Meiotic expression up-regulated protein 23
           OS=Schizosaccharomyces pombe GN=meu23 PE=2 SV=1
          Length = 254

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 497 LAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKR 387
           +  VQDV+ LSR +    ++ Y    H  ET G++K+
Sbjct: 196 ITSVQDVDRLSRSQCSRYLQGYGVTFHVNETIGMKKK 232


>sp|Q12726|HOSM_YARLI Homocitrate synthase, mitochondrial
           OS=Yarrowia lipolytica GN=LYS1 PE=3 SV=1
          Length = 446

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = -2

Query: 200 SSEEFRSLNEKLLPLLQQIERMNEERVGSAD-------KQIQRLVRSLKS 72
           S + FRS    LL + + ++++   RVG AD       +Q+  LVR+LKS
Sbjct: 179 SEDSFRSDLVDLLNIYRTVDKIGVNRVGIADTVGCANPRQVYELVRTLKS 228
tr_hit_id A9TC03
Definition tr|A9TC03|A9TC03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 161
Score (bit) 122.0
E-value 1.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921134|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_B06.
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TC03|A9TC03_PHYPA Predicted protein OS=Physcomitrella paten...   122   1e-26
tr|A7PF32|A7PF32_VITVI Chromosome chr11 scaffold_13, whole genom...    91   5e-17
tr|Q9LU53|Q9LU53_ARATH Similarity to unknown protein OS=Arabidop...    72   2e-11
tr|B8ADU0|B8ADU0_ORYSI Putative uncharacterized protein OS=Oryza...    71   4e-11
tr|A3A499|A3A499_ORYSJ Putative uncharacterized protein OS=Oryza...    71   4e-11
tr|Q2HVT7|Q2HVT7_MEDTR Putative uncharacterized protein OS=Medic...    70   5e-11
tr|Q4Y990|Q4Y990_PLACH Putative uncharacterized protein (Fragmen...    37   0.66 
tr|A6CEY2|A6CEY2_9PLAN Sensor protein OS=Planctomyces maris DSM ...    35   2.5  
tr|B3M4Z2|B3M4Z2_DROAN GF23863 OS=Drosophila ananassae GN=GF2386...    35   3.3  
tr|Q0AYV7|Q0AYV7_SYNWW Condensin subunit Smc OS=Syntrophomonas w...    34   4.3  
tr|B7YCK7|B7YCK7_9BACI Putative uncharacterized protein OS=Geoba...    34   5.6  
tr|Q29E82|Q29E82_DROPS GA16858 OS=Drosophila pseudoobscura pseud...    33   9.5  
tr|B4HAT0|B4HAT0_DROPE GL21182 OS=Drosophila persimilis GN=GL211...    33   9.5  
tr|B0R5X9|B0R5X9_HALS3 Putative uncharacterized protein OS=Halob...    33   9.5  

>tr|A9TC03|A9TC03_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_143304 PE=4 SV=1
          Length = 1823

 Score =  122 bits (306), Expect = 1e-26
 Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 1/161 (0%)
 Frame = -2

Query: 539  ALEILPAGTQRSLLLAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKR-RYVAMVEM 363
            +L++  A  +++LLLA++QDVNELSRHEVDDIIKAY R E     + IRKR RYVAMVEM
Sbjct: 1667 SLDLELALEEKALLLARLQDVNELSRHEVDDIIKAYGRQERSDPADSIRKRWRYVAMVEM 1726

Query: 362  CSAAGNRESVXXXXXXXXXXXXXXLFIHYDEEFQVPDNLRDRGENMDNVKSFLGSSEEFR 183
            CSAAG+RE                L++H          L  +G    N+++  G  E+ +
Sbjct: 1727 CSAAGSRECQVSSLIFLVEHALEILYVH----------LEKQGRFELNLETNWGRKEDVQ 1776

Query: 182  SLNEKLLPLLQQIERMNEERVGSADKQIQRLVRSLKSRIVL 60
             L  KLLP+  ++E +NE+RVG + K +QRLV SLKSRI++
Sbjct: 1777 LLAGKLLPVFDRLECLNEDRVGRSMKHLQRLVHSLKSRIMM 1817


>tr|A7PF32|A7PF32_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016889001
           PE=4 SV=1
          Length = 277

 Score = 90.5 bits (223), Expect = 5e-17
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 8/157 (5%)
 Frame = -2

Query: 521 AGTQRSLLLAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKRRYVAMVEMCSAAGNR 342
           A  ++SLLL K+QD+NELSR EVD+II    R +    ++  ++RRY+AMVEMC  AGNR
Sbjct: 122 AAEEKSLLLNKIQDINELSRQEVDEIINMCVRQDCVSSSDNTQRRRYIAMVEMCQVAGNR 181

Query: 341 ESVXXXXXXXXXXXXXXLFIHYDEEFQVPD--------NLRDRGENMDNVKSFLGSSEEF 186
           + +              + IH+ +    P            D+ +N  ++  F G     
Sbjct: 182 DQLITLLLPLAEHVLNVILIHFQDGSITPGTSATTKAITFGDKFDNGQDISVFCG----- 236

Query: 185 RSLNEKLLPLLQQIERMNEERVGSADKQIQRLVRSLK 75
                KL+P L+++E ++E++VG   K  +RLV SLK
Sbjct: 237 -----KLIPTLERLELLSEDKVGHNLKVFRRLVSSLK 268


>tr|Q9LU53|Q9LU53_ARATH Similarity to unknown protein OS=Arabidopsis
            thaliana PE=4 SV=1
          Length = 1837

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
 Frame = -2

Query: 521  AGTQRSLLLAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKRRYVAMVEMCSAAGNR 342
            A  ++SLLL K++D+NELSR +VD IIK     E+   ++ I KRRY+AMVEMC   GNR
Sbjct: 1660 AAEKKSLLLHKIRDINELSRQDVDAIIKICDSQEYVTPSDNIHKRRYIAMVEMCQIVGNR 1719

Query: 341  ESVXXXXXXXXXXXXXXLFIHYDEEFQVPDNLRDRGENMDNVKSFLGSS---EEFRSLNE 171
            + +              + IH          L+DR  + +   S+   S   +E   L  
Sbjct: 1720 DQLITLLLQLAEHVLNIILIH----------LQDRSVSSNERGSYGSKSHIQQEVTDLCG 1769

Query: 170  KLLPLLQQIERMNE 129
            KL P + ++  +NE
Sbjct: 1770 KLSPTIDRLALLNE 1783


>tr|B8ADU0|B8ADU0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_06283 PE=4 SV=1
          Length = 1814

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 39/128 (30%), Positives = 66/128 (51%)
 Frame = -2

Query: 512  QRSLLLAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKRRYVAMVEMCSAAGNRESV 333
            ++ +LL K++D+NELSR EVDDIIK   + +     + IRKRR++AM+E+C  AGNR  +
Sbjct: 1681 EKYMLLNKIRDLNELSRKEVDDIIKLCMKQDCISPNDNIRKRRFIAMIELCCMAGNRGQL 1740

Query: 332  XXXXXXXXXXXXXXLFIHYDEEFQVPDNLRDRGENMDNVKSFLGSSEEFRSLNEKLLPLL 153
                          L +H+ +E                       +++  S +++LLP+L
Sbjct: 1741 ITLLLQIAECAVTILLVHFQDE---------------------SCAKDISSFSDELLPIL 1779

Query: 152  QQIERMNE 129
            +++E   E
Sbjct: 1780 ERLEHFTE 1787


>tr|A3A499|A3A499_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_005621 PE=4 SV=1
          Length = 1960

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 39/128 (30%), Positives = 66/128 (51%)
 Frame = -2

Query: 512  QRSLLLAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKRRYVAMVEMCSAAGNRESV 333
            ++ +LL K++D+NELSR EVDDIIK   + +     + IRKRR++AM+E+C  AGNR  +
Sbjct: 1827 EKYMLLNKIRDLNELSRKEVDDIIKLCMKQDCISPNDNIRKRRFIAMIELCCMAGNRGQL 1886

Query: 332  XXXXXXXXXXXXXXLFIHYDEEFQVPDNLRDRGENMDNVKSFLGSSEEFRSLNEKLLPLL 153
                          L +H+ +E                       +++  S +++LLP+L
Sbjct: 1887 ITLLLQIAECAVTILLVHFQDE---------------------SCAKDISSFSDELLPIL 1925

Query: 152  QQIERMNE 129
            +++E   E
Sbjct: 1926 ERLEHFTE 1933


>tr|Q2HVT7|Q2HVT7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula GN=MtrDRAFT_AC148343g24v2 PE=4 SV=2
          Length = 425

 Score = 70.5 bits (171), Expect = 5e-11
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
 Frame = -2

Query: 521 AGTQRSLLLAKVQDVNELSRHEVDDIIKAYSRVEHPGETEGIRKRRYVAMVEMCSAAGNR 342
           A  ++SLLL K++D+NEL+R EVD+II    R E    ++ I++RRY+AMVEMC      
Sbjct: 271 AAEEKSLLLNKIRDINELARQEVDEIISMCVRQESASSSDNIQRRRYIAMVEMCRVVSCT 330

Query: 341 ESVXXXXXXXXXXXXXXLFIHYDEEFQVPDNLRDRGENMDNVKSF-----LGSSEEFRSL 177
           + +              + +H  +         D  E+    K+          ++   L
Sbjct: 331 DQLIVLLLPLSEHVLNIILVHLQD-------CSDAFESTMTTKTITYGAKCDPQQDLALL 383

Query: 176 NEKLLPLLQQIERMNEERVGSADKQIQRLVRSLK 75
             +L+P L+++E ++EE++G   K   RL  S K
Sbjct: 384 CGQLVPTLERLELLSEEKLGHTLKVFCRLATSAK 417


>tr|Q4Y990|Q4Y990_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC100018.00.0 PE=4 SV=1
          Length = 584

 Score = 37.0 bits (84), Expect = 0.66
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = +3

Query: 120 YPFLIHSFNLLKKRKKLLIQGAKLLAGPKE*LDIVHVLTSVS*VIRHLKFLIIVDEQNVQ 299
           + FL+H F L  + +  L++  K+    +  L+ VHV  +V  ++  LK   +VD QN  
Sbjct: 419 FHFLLHLFMLANRDQAKLVENKKIQNSNEAYLNSVHVYITV--LVEKLKKNSLVDYQNFI 476

Query: 300 SMLNYEEMDCNDRFPISCCT 359
            +  Y  +  N+ F  S C+
Sbjct: 477 YLFKYNHLFINNIFLFSLCS 496


>tr|A6CEY2|A6CEY2_9PLAN Sensor protein OS=Planctomyces maris DSM
           8797 GN=PM8797T_02639 PE=4 SV=1
          Length = 1780

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 19/56 (33%), Positives = 37/56 (66%)
 Frame = -2

Query: 245 RDRGENMDNVKSFLGSSEEFRSLNEKLLPLLQQIERMNEERVGSADKQIQRLVRSL 78
           R R E  ++V+   GS+EE +S NE+LL + ++++  NEE + ++ ++IQ  + +L
Sbjct: 662 RTRTELENSVQELEGSNEELKSSNEELLSINEELQSANEE-LETSKEEIQASMEAL 716


>tr|B3M4Z2|B3M4Z2_DROAN GF23863 OS=Drosophila ananassae GN=GF23863
            PE=4 SV=1
          Length = 1369

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = -2

Query: 230  NMDNVKSFLGSSEEFRSLNEKLLPLLQQIERMN------EERVGSADKQIQRLVRSLKSR 69
            N+  V  +  S + F  L +  LPL+QQ+++ N      E R+   DKQ Q  VR  K+R
Sbjct: 1309 NIPGVADYSTSVDNFHGLKQIELPLMQQLDKSNPILQILEVRIN--DKQAQDFVRKQKAR 1366

Query: 68   IV 63
            ++
Sbjct: 1367 LI 1368


>tr|Q0AYV7|Q0AYV7_SYNWW Condensin subunit Smc OS=Syntrophomonas
           wolfei subsp. wolfei (strain Goettingen) GN=Swol_0776
           PE=4 SV=1
          Length = 1191

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = -2

Query: 248 LRDRGENMDNVKSFLGSSEEFRSLNEKLLPLLQQIERMNEERVGSADKQIQRLVRSLKSR 69
           LR+  E +   +  LG   E R L E  L LLQ   R+ EER+ + +K+I   V   K +
Sbjct: 269 LREEEEGLARQQLSLGELGEQRHLLESRLNLLQGEIRLGEERIKNNNKRIDDAVADEKKQ 328

Query: 68  IVL 60
           ++L
Sbjct: 329 LIL 331