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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921139
Clone id YMU001_000146_B11
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGAATGTGTACGCCATAAGAATAGATACAATCATCTCTTGCATTAGGACCTTCATAACC
ATGGATATTCTTAAGGGAAGGCATCATTAATAAAGATGCAGATTTTTCTTCTGCTGAAGT
TTGAATTTTTTATCCTTCAAAATTCTTCGACTAAAGGCAATTGGAACCTTCGTGACACAT
CAATGCCGTTTCTGATTGCACTAGGCACAATGTTTGTACAAAGAGTTGACTGAGATTACC
ACAGAAAGAAGAGACTGCCCTCAAATCTTCGGTTGAGTTTCTTGCTCCAAAGCATATTTT
CTCTTGTATTCCTCTAAAACCTCATCACTTGTATATTGATGCAAGCACTCGTTAAGAAGC
TTGAACTGAGAGCGGCAAGCCCATACTACCGAAAGGGTCCTTCCAGAAGCGCACTCTGCA
TACTTAGCTACTAACCCGTCACACTCCTGCAAAGCCCTGGCCTTCATCTTGCTGCGAAGA
GCTTCTTCGACTTTCTTCTTCAGGCGCGTCTCTCTCGCGTCGTCTGCAAAACCCATGCTC
CCGCATG
■■Homology search results ■■ -
sp_hit_id Q552P9
Definition sp|Q552P9|Y5933_DICDI Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum
Align length 73
Score (bit) 61.2
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921139|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_B11.
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q552P9|Y5933_DICDI Uncharacterized protein DDB_G0275933 OS=Di...    61   3e-09
sp|Q7Z7K0|COXAM_HUMAN COX assembly mitochondrial protein homolog...    39   0.016
sp|Q3SZM6|COXAM_BOVIN COX assembly mitochondrial protein homolog...    39   0.021
sp|Q9CPZ8|COXAM_MOUSE COX assembly mitochondrial protein homolog...    37   0.062
sp|P36064|COXAM_YEAST COX assembly mitochondrial protein OS=Sacc...    36   0.11 
sp|Q5L4W8|TIG_CHLAB Trigger factor OS=Chlamydophila abortus GN=t...    32   2.0  
sp|P04276|VTDB_RAT Vitamin D-binding protein OS=Rattus norvegicu...    30   7.6  

>sp|Q552P9|Y5933_DICDI Uncharacterized protein DDB_G0275933
           OS=Dictyostelium discoideum GN=DDB_G0275933 PE=3 SV=1
          Length = 121

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 29/73 (39%), Positives = 45/73 (61%)
 Frame = -3

Query: 512 ETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKLLNECLHQY 333
           E  L   V+  LR K+K ++L+EC   VA +A+C+  + +SVVW CR   +L+  CL +Y
Sbjct: 23  EVVLPAAVDSYLRQKLKDQSLKECSSHVAAFADCSKDKYISVVWECRELQQLMKNCLVEY 82

Query: 332 TSDEVLEEYKRKY 294
           T+ E L   KR++
Sbjct: 83  TTSERLIGMKREW 95


>sp|Q7Z7K0|COXAM_HUMAN COX assembly mitochondrial protein homolog
           OS=Homo sapiens GN=CMC1 PE=1 SV=1
          Length = 106

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = -3

Query: 521 DARETRLKKKVEEALRSK-MKARALQECDGLVAKYAECASGRTLSVVWACRSQFKLLNEC 345
           D  +  L+   ++ L  K M+ +A + C   V  + +C     + +V  CR +   L EC
Sbjct: 4   DPADQHLRHVEKDVLIPKIMREKAKERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKEC 63

Query: 344 LHQYTSDEVL-EEYKRKYALEQE 279
           L  Y +D    EE K +Y  E+E
Sbjct: 64  LTAYYNDPAFYEECKMEYLKERE 86


>sp|Q3SZM6|COXAM_BOVIN COX assembly mitochondrial protein homolog
           OS=Bos taurus GN=CMC1 PE=3 SV=1
          Length = 106

 Score = 38.5 bits (88), Expect = 0.021
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -3

Query: 521 DARETRLKKKVEEALRSK-MKARALQECDGLVAKYAECASGRTLSVVWACRSQFKLLNEC 345
           D  E  L+   ++ L  K M+ +A + C   V  + +C     + +V  CR +   L +C
Sbjct: 4   DPSEQHLRHVEKDVLIPKIMREKARERCSEQVQDFTKCCKDSGVLMVVKCRKENSALKDC 63

Query: 344 LHQYTSDEVL-EEYKRKYALEQE 279
           L  Y  D    EE K +Y  E+E
Sbjct: 64  LTSYYKDPAFYEECKMEYLKERE 86


>sp|Q9CPZ8|COXAM_MOUSE COX assembly mitochondrial protein homolog
           OS=Mus musculus GN=Cmc1 PE=2 SV=1
          Length = 106

 Score = 37.0 bits (84), Expect = 0.062
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -3

Query: 521 DARETRLKKKVEEALRSKM-KARALQECDGLVAKYAECASGRTLSVVWACRSQFKLLNEC 345
           D  E  L+   ++ L  K+ + +A + C   V  +  C     + +V  CR +   L +C
Sbjct: 4   DPAEQHLRHVEKDVLIPKIIREKARERCSEQVEDFTRCCKDSGILMVLKCRKENSALKDC 63

Query: 344 LHQYTSDEVL-EEYKRKYALEQE 279
           L  Y +D    EE K +Y  E+E
Sbjct: 64  LTAYYNDPAFYEECKLEYLKERE 86


>sp|P36064|COXAM_YEAST COX assembly mitochondrial protein
           OS=Saccharomyces cerevisiae GN=CMC1 PE=1 SV=1
          Length = 103

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 503 LKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKLLNECLHQYTSD 324
           L  + E+  R  +K    ++C   V   A+CA    + V   C  Q   +  CL  Y +D
Sbjct: 14  LSPREEQQARKNLKTETYKKCANFVQAMADCAKANGMKVFPTCDKQRDEMKSCLLFYQTD 73

Query: 323 E-VLEEYKRKYALEQ 282
           E  L+  + K  LE+
Sbjct: 74  EKYLDGERDKIVLEK 88


>sp|Q5L4W8|TIG_CHLAB Trigger factor OS=Chlamydophila abortus GN=tig
           PE=3 SV=1
          Length = 441

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
 Frame = -3

Query: 503 LKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVV------------WACRSQFK 360
           LKKK+   L ++ K R  Q+C      +AE A     S++             A  ++ K
Sbjct: 275 LKKKLRIQLENQAKDRQHQQC------FAE-AENALASIIDFDLPTSMLEDRLAMLTRAK 327

Query: 359 LLNECLHQYTSDEVLEEYKRKYALEQETQPK 267
           LLN  L QY SDE LE  K     E E + K
Sbjct: 328 LLNARLIQYCSDEELENKKSDLLKEAELEAK 358


>sp|P04276|VTDB_RAT Vitamin D-binding protein OS=Rattus norvegicus
           GN=Gc PE=1 SV=3
          Length = 476

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -3

Query: 509 TRLKKKVEEALRSKMKARALQECDGLVAKYAECAS 405
           T  KKK+ E LR+KM   + +E   +VAK+++ AS
Sbjct: 416 TEYKKKLAERLRTKMPNASPEELADMVAKHSDFAS 450
tr_hit_id B6TQ00
Definition tr|B6TQ00|B6TQ00_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 88
Score (bit) 125.0
E-value 2.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921139|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_B11.
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TQ00|B6TQ00_MAIZE Putative uncharacterized protein OS=Zea m...   125   2e-27
tr|Q1KUS2|Q1KUS2_9ROSI Putative uncharacterized protein OS=Cleom...   124   2e-27
tr|A9PCG2|A9PCG2_POPTR Putative uncharacterized protein OS=Popul...   124   2e-27
tr|Q10NU8|Q10NU8_ORYSJ Os03g0257900 protein OS=Oryza sativa subs...   124   4e-27
tr|A2XEQ0|A2XEQ0_ORYSI Putative uncharacterized protein OS=Oryza...   124   4e-27
tr|Q9LFR9|Q9LFR9_ARATH Putative uncharacterized protein F1N13_20...   118   2e-25
tr|A7PAN5|A7PAN5_VITVI Chromosome chr14 scaffold_9, whole genome...   118   2e-25
tr|Q1KUM8|Q1KUM8_9ROSI Putative uncharacterized protein OS=Cleom...    88   3e-16
tr|A4RRJ6|A4RRJ6_OSTLU Predicted protein OS=Ostreococcus lucimar...    70   7e-11
tr|A8N1T2|A8N1T2_COPC7 Predicted protein OS=Coprinopsis cinerea ...    70   7e-11
tr|B0CQH9|B0CQH9_LACBS Predicted protein OS=Laccaria bicolor (st...    66   1e-09
tr|B3SA19|B3SA19_TRIAD Putative uncharacterized protein OS=Trich...    59   2e-07
tr|Q5KJR5|Q5KJR5_CRYNE Putative uncharacterized protein OS=Crypt...    50   6e-05
tr|Q01G25|Q01G25_OSTTA [S] KOG4624 Uncharacterized conserved pro...    49   1e-04
tr|B6JZV0|B6JZV0_SCHJP Predicted protein OS=Schizosaccharomyces ...    49   2e-04
tr|B4Q7F3|B4Q7F3_DROSI GD21901 OS=Drosophila simulans GN=GD21901...    48   3e-04
tr|A9UZH0|A9UZH0_MONBE Predicted protein OS=Monosiga brevicollis...    48   3e-04
tr|B4P9B0|B4P9B0_DROYA GE13169 OS=Drosophila yakuba GN=GE13169 P...    47   5e-04
tr|Q9VJJ1|Q9VJJ1_DROME CG17996 OS=Drosophila melanogaster GN=CG1...    47   7e-04
tr|B4I538|B4I538_DROSE GM17163 OS=Drosophila sechellia GN=GM1716...    47   7e-04
tr|B3NNJ7|B3NNJ7_DROER GG20112 OS=Drosophila erecta GN=GG20112 P...    47   7e-04
tr|A7RQG2|A7RQG2_NEMVE Predicted protein (Fragment) OS=Nematoste...    46   0.001
tr|B3MU94|B3MU94_DROAN GF24351 OS=Drosophila ananassae GN=GF2435...    45   0.002
tr|Q7SDV5|Q7SDV5_NEUCR Putative uncharacterized protein OS=Neuro...    45   0.002
tr|Q6MUU2|Q6MUU2_NEUCR Putative uncharacterized protein 5C2.160 ...    45   0.002
tr|B6QAZ2|B6QAZ2_PENMA Putative uncharacterized protein OS=Penic...    44   0.004
tr|B2W500|B2W500_PYRTR Putative uncharacterized protein OS=Pyren...    44   0.004
tr|Q6C7C2|Q6C7C2_YARLI YALI0E02002p OS=Yarrowia lipolytica GN=YA...    44   0.007
tr|B8M2Z3|B8M2Z3_9EURO Putative uncharacterized protein OS=Talar...    42   0.016
tr|B4MVR5|B4MVR5_DROWI GK15123 OS=Drosophila willistoni GN=GK151...    42   0.021

>tr|B6TQ00|B6TQ00_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 92

 Score =  125 bits (313), Expect = 2e-27
 Identities = 58/88 (65%), Positives = 70/88 (79%)
 Frame = -3

Query: 536 MGFADDARETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKL 357
           MG+  +ARE  +KKKVEEALRSKMK +ALQECD   +KYAECA GRT SVVW CR Q K 
Sbjct: 1   MGYLQEARENHVKKKVEEALRSKMKQKALQECDFYCSKYAECARGRTFSVVWQCRKQAKE 60

Query: 356 LNECLHQYTSDEVLEEYKRKYALEQETQ 273
           LNECLHQYT+D +LEE K+ Y +EQ+++
Sbjct: 61  LNECLHQYTNDAILEEMKKAYMIEQKSK 88


>tr|Q1KUS2|Q1KUS2_9ROSI Putative uncharacterized protein OS=Cleome
           spinosa PE=4 SV=1
          Length = 93

 Score =  124 bits (312), Expect = 2e-27
 Identities = 58/86 (67%), Positives = 70/86 (81%)
 Frame = -3

Query: 536 MGFADDARETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKL 357
           MG+   ARE  +KKKVEEALRSKMKA+AL+ECD   +KYA+CA+GRT SVVW CR+Q K 
Sbjct: 1   MGYVQQARENHVKKKVEEALRSKMKAKALKECDHYTSKYAQCATGRTFSVVWKCRNQAKE 60

Query: 356 LNECLHQYTSDEVLEEYKRKYALEQE 279
           LN CLHQYT+D VLEE KR+Y L++E
Sbjct: 61  LNACLHQYTNDGVLEEMKREYMLQEE 86


>tr|A9PCG2|A9PCG2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 93

 Score =  124 bits (312), Expect = 2e-27
 Identities = 56/88 (63%), Positives = 73/88 (82%)
 Frame = -3

Query: 536 MGFADDARETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKL 357
           MG+  +ARE  +KKKVEEALRSKMK +AL++C+ L +KYA+CA+GRT+SVVW CR Q K 
Sbjct: 1   MGYIQEARENHVKKKVEEALRSKMKQKALKQCEELASKYAQCATGRTMSVVWQCRKQAKE 60

Query: 356 LNECLHQYTSDEVLEEYKRKYALEQETQ 273
           LNECLHQ+T+D VLEE KR+Y L+Q+ +
Sbjct: 61  LNECLHQFTNDAVLEEMKREYTLQQDVK 88


>tr|Q10NU8|Q10NU8_ORYSJ Os03g0257900 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0257900 PE=4 SV=1
          Length = 92

 Score =  124 bits (310), Expect = 4e-27
 Identities = 58/90 (64%), Positives = 71/90 (78%)
 Frame = -3

Query: 536 MGFADDARETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKL 357
           MG+  +ARE  +KKKVEEALRSKMK +AL+ECD   +KYAECA GRT SVVW CR Q K 
Sbjct: 1   MGYLQEARENHVKKKVEEALRSKMKQKALKECDFYCSKYAECARGRTFSVVWQCRKQAKE 60

Query: 356 LNECLHQYTSDEVLEEYKRKYALEQETQPK 267
           LN+CLHQ+T+D VLEE K+ Y +EQE++ K
Sbjct: 61  LNDCLHQFTNDAVLEEMKKAYMVEQESKEK 90


>tr|A2XEQ0|A2XEQ0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10813 PE=4 SV=1
          Length = 92

 Score =  124 bits (310), Expect = 4e-27
 Identities = 58/90 (64%), Positives = 71/90 (78%)
 Frame = -3

Query: 536 MGFADDARETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKL 357
           MG+  +ARE  +KKKVEEALRSKMK +AL+ECD   +KYAECA GRT SVVW CR Q K 
Sbjct: 1   MGYLQEARENHVKKKVEEALRSKMKQKALKECDFYCSKYAECARGRTFSVVWQCRKQAKE 60

Query: 356 LNECLHQYTSDEVLEEYKRKYALEQETQPK 267
           LN+CLHQ+T+D VLEE K+ Y +EQE++ K
Sbjct: 61  LNDCLHQFTNDAVLEEMKKAYMVEQESKEK 90


>tr|Q9LFR9|Q9LFR9_ARATH Putative uncharacterized protein F1N13_200
           (At5g16060) (Putative uncharacterized protein
           At5g16060/F1N13_200) OS=Arabidopsis thaliana
           GN=F1N13_200 PE=4 SV=1
          Length = 95

 Score =  118 bits (296), Expect = 2e-25
 Identities = 54/84 (64%), Positives = 67/84 (79%)
 Frame = -3

Query: 530 FADDARETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKLLN 351
           + + ARE  +KKKVEEALRSKMKA+AL ECD  V+KYA+CA+GRT SVVW CR Q + LN
Sbjct: 4   YVEQARENHVKKKVEEALRSKMKAKALMECDQYVSKYAQCATGRTFSVVWTCRKQARELN 63

Query: 350 ECLHQYTSDEVLEEYKRKYALEQE 279
            CLHQ+T+D VLEE KR Y +++E
Sbjct: 64  TCLHQFTNDNVLEEMKRAYMVQEE 87


>tr|A7PAN5|A7PAN5_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038193001
           PE=4 SV=1
          Length = 93

 Score =  118 bits (295), Expect = 2e-25
 Identities = 52/86 (60%), Positives = 70/86 (81%)
 Frame = -3

Query: 536 MGFADDARETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKL 357
           MG+  +A+E ++KKKVEEALRSKMK +AL+EC+   +KYA+CA+G+T+SVVW CR Q K 
Sbjct: 1   MGYFQEAKENQMKKKVEEALRSKMKQKALKECNEYASKYAQCAAGKTISVVWHCRKQAKE 60

Query: 356 LNECLHQYTSDEVLEEYKRKYALEQE 279
           LNECLHQYT+D + EE K++Y  +QE
Sbjct: 61  LNECLHQYTNDTIFEEMKKEYMAQQE 86


>tr|Q1KUM8|Q1KUM8_9ROSI Putative uncharacterized protein OS=Cleome
           spinosa PE=4 SV=1
          Length = 100

 Score = 88.2 bits (217), Expect = 3e-16
 Identities = 44/81 (54%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
 Frame = -3

Query: 536 MGFADDARETRLKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKL 357
           MG+   ARE  +KKKVEEALRSKMKA+AL ECD   +KYA+CA+GRTLSVVW CR  F  
Sbjct: 1   MGYVQQARENHVKKKVEEALRSKMKAKALMECDHYTSKYAQCATGRTLSVVWQCRCGFVE 60

Query: 356 L----NECLHQYTSDEVLEEY 306
           +    N+ LH +    +L ++
Sbjct: 61  IQHNGNKALHLHFHITILSKW 81


>tr|A4RRJ6|A4RRJ6_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_29039 PE=4 SV=1
          Length = 95

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 34/68 (50%), Positives = 42/68 (61%)
 Frame = -3

Query: 497 KKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKLLNECLHQYTSDEV 318
           KK EEAL + MK RAL  C      Y EC  GRTLSV WACR Q + ++ CL ++TSD  
Sbjct: 9   KKEEEALITLMKERALVRCKTAQRTYYECVKGRTLSVAWACREQARAMSACLSEHTSDAT 68

Query: 317 LEEYKRKY 294
           LE  K ++
Sbjct: 69  LETMKARW 76


>tr|A8N1T2|A8N1T2_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_03625 PE=4
           SV=1
          Length = 118

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 30/57 (52%), Positives = 41/57 (71%)
 Frame = -3

Query: 503 LKKKVEEALRSKMKARALQECDGLVAKYAECASGRTLSVVWACRSQFKLLNECLHQY 333
           L ++ EEAL    KARA+ ECD LV ++A CASGRT+SV WAC+   +++ EC+ QY
Sbjct: 6   LSRREEEALLKATKARAMHECDDLVKQFAACASGRTVSVAWACKDALRMVQECMVQY 62