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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921142
Clone id YMU001_000146_C03
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGTGGCTCTCACCATATCATCCCCTAAGAGCTGACCATTAGGTTGATCGGTCAAAGCGT
CTGGCGAGTCTGAAGTGAGTGACTCATTTGTGAAACGAATACTAAGAGGGCGGTCGTCAT
CATCCGATGAATTTGCGGACGAGTTATACTCTGCTTGCTTTTGCAAAAGATATTGCTGTC
TTTCAGCCACATTGACATCCCCGTTACTATGATGCTGCTTTCCTAGACTTCCCAGTAACT
GGCTTGGAGACTGCTCAAGCAAGGTCTCATCGAGTTGTTCCTTAATGGTAACATTAACAT
TCGATCTTGCTCTCAGTGAAGTCTCCTTAGCATTTGCTAAACTGATGTGTGGATGTCCTG
CTGGTCTAACTTTTCCCTCTATCTGACCACTTGAATCGAAGGGATCCCTTAATTTTGGCA
CATCCATATCATTTTTACTGCCACATAACTTAGTGCGAGCAGCAGAATCCTACTCCTTGA
GAGTGTAATGTATTTCCTGAGGAGATACAGTATCTGATATGCG
■■Homology search results ■■ -
sp_hit_id Q7TNC6
Definition sp|Q7TNC6|KI26B_MOUSE Kinesin-like protein KIF26B OS=Mus musculus
Align length 31
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921142|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_C03.
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TNC6|KI26B_MOUSE Kinesin-like protein KIF26B OS=Mus musculu...    32   1.8  
sp|Q2KJY2|KI26B_HUMAN Kinesin-like protein KIF26B OS=Homo sapien...    32   1.8  
sp|B0TNS0|NFUA_SHEHH Fe/S biogenesis protein nfuA OS=Shewanella ...    31   3.1  
sp|O35923|BRCA2_RAT Breast cancer type 2 susceptibility protein ...    31   3.1  
sp|A8FPL9|NFUA_SHESH Fe/S biogenesis protein nfuA OS=Shewanella ...    31   4.1  
sp|Q6AJK1|SECA_DESPS Protein translocase subunit secA OS=Desulfo...    30   5.3  
sp|A4ST19|NFUA_AERS4 Fe/S biogenesis protein nfuA OS=Aeromonas s...    30   7.0  
sp|A0KF09|NFUA_AERHH Fe/S biogenesis protein nfuA OS=Aeromonas h...    30   7.0  
sp|Q70LM4|LGRD_BREPA Linear gramicidin synthetase subunit D OS=B...    30   7.0  
sp|P93022|ARFG_ARATH Auxin response factor 7 OS=Arabidopsis thal...    30   7.0  
sp|Q8QZV6|F161A_MOUSE UPF0564 protein FAM161A OS=Mus musculus GN...    30   9.1  

>sp|Q7TNC6|KI26B_MOUSE Kinesin-like protein KIF26B OS=Mus musculus
            GN=Kif26b PE=2 SV=2
          Length = 2112

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 409  RDPFDSSGQIEGKVRPAGHPHISLANAKETS 317
            R+  +S G +EGK RP G P + +A+  +TS
Sbjct: 1048 RESLNSCGFVEGKPRPMGSPRLGIASLSKTS 1078


>sp|Q2KJY2|KI26B_HUMAN Kinesin-like protein KIF26B OS=Homo sapiens
            GN=KIF26B PE=1 SV=1
          Length = 2108

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 409  RDPFDSSGQIEGKVRPAGHPHISLANAKETS 317
            R+  +S G +EGK RP G P + +A+  +TS
Sbjct: 1047 RESLNSCGFVEGKPRPMGSPRLGIASLSKTS 1077


>sp|B0TNS0|NFUA_SHEHH Fe/S biogenesis protein nfuA OS=Shewanella
           halifaxensis (strain HAW-EB4) GN=nfuA PE=3 SV=1
          Length = 192

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 304 SNVNVTIKEQLDETLLEQSPSQLLGSLGKQHHSNGD 197
           S V+VT+K+ +++ LLE  PS+L G      H +G+
Sbjct: 153 SMVDVTLKDGIEKQLLEMFPSELTGVKDVTEHQHGE 188


>sp|O35923|BRCA2_RAT Breast cancer type 2 susceptibility protein
           homolog OS=Rattus norvegicus GN=Brca2 PE=1 SV=1
          Length = 3343

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = -1

Query: 403 PFDSSGQIEGKVRPAGH-PHISLANAKETSLRARSNVNVTIKEQLDETLLEQSPSQLLGS 227
           P+++    E + +P GH P +     +  S    ++  +  KEQ     L+QSP + LG+
Sbjct: 41  PYNTEHPEESEYKPQGHEPQLFKTPQRNPSYHQFASTPIMFKEQSQTLPLDQSPFKELGN 100

Query: 226 L----GKQHHS 206
           +     ++HHS
Sbjct: 101 VVANSKRKHHS 111


>sp|A8FPL9|NFUA_SHESH Fe/S biogenesis protein nfuA OS=Shewanella
           sediminis (strain HAW-EB3) GN=nfuA PE=3 SV=1
          Length = 192

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 304 SNVNVTIKEQLDETLLEQSPSQLLGSLGKQHHSNGD 197
           S V+VT+K+ ++  LLE+ P +L G      H +GD
Sbjct: 153 SMVDVTLKDGIETQLLEKFPGELTGVKDVTEHQHGD 188


>sp|Q6AJK1|SECA_DESPS Protein translocase subunit secA
           OS=Desulfotalea psychrophila GN=secA PE=3 SV=1
          Length = 850

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = -1

Query: 454 TKLCGSKNDMDVPKLRDPFDSSGQIEGKVRPAGHPHISLANAKETSLRARSNVNVTIKEQ 275
           TK+ GSKND  + ++R        +E  ++P G   +    AK    + R     ++K+ 
Sbjct: 7   TKVFGSKNDRVLKQIRPLVTRINDLESTIKPLGDAALV---AKTVEFKERIAKGESLKDL 63

Query: 274 LDET--LLEQSPSQLLG 230
           L E+  ++ ++ S++LG
Sbjct: 64  LPESFAVMREAASRVLG 80


>sp|A4ST19|NFUA_AERS4 Fe/S biogenesis protein nfuA OS=Aeromonas
           salmonicida (strain A449) GN=nfuA PE=3 SV=1
          Length = 192

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 304 SNVNVTIKEQLDETLLEQSPSQLLGSLGKQHHSNGD 197
           S V+ T+KE +++ LLE+ P +L G      H  GD
Sbjct: 153 SMVDYTLKEGIEKQLLEKFPGELNGVKDATEHQRGD 188


>sp|A0KF09|NFUA_AERHH Fe/S biogenesis protein nfuA OS=Aeromonas
           hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
           9240) GN=nfuA PE=3 SV=1
          Length = 192

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 304 SNVNVTIKEQLDETLLEQSPSQLLGSLGKQHHSNGD 197
           S V+ T+KE +++ LLE+ P +L G      H  GD
Sbjct: 153 SMVDYTLKEGIEKQLLEKFPGELNGVKDATEHQRGD 188


>sp|Q70LM4|LGRD_BREPA Linear gramicidin synthetase subunit D
            OS=Brevibacillus parabrevis GN=lgrD PE=1 SV=1
          Length = 5085

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -1

Query: 361  AGHPHIS--LANAKETSLRARSNVNVTIKEQLDETLLEQSPS 242
            +GHP     LA  +ET+L A ++ +V  ++ LDE  LE+S S
Sbjct: 3938 SGHPSFRELLARVRETALEAYAHQDVPFEKLLDELQLERSMS 3979


>sp|P93022|ARFG_ARATH Auxin response factor 7 OS=Arabidopsis
           thaliana GN=ARF7 PE=1 SV=2
          Length = 1164

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -1

Query: 352 PHISLANAKETSLRARSNVNVTIKEQLDETLLEQSPSQLLGS---LGKQHHSNGDVNVAE 182
           P  +L+  ++      S++N   ++Q  ++  +Q   QLL     L  Q HSN + + ++
Sbjct: 495 PPTTLSQQQQLQQLLHSSLNH--QQQQSQSQQQQQQQQLLQQQQQLQSQQHSNNNQSQSQ 552

Query: 181 RQQYLLQKQAE 149
           +QQ LLQ+Q +
Sbjct: 553 QQQQLLQQQQQ 563
tr_hit_id B1T3Q7
Definition tr|B1T3Q7|B1T3Q7_9BURK Putative uncharacterized protein OS=Burkholderia ambifaria MEX-5
Align length 117
Score (bit) 34.3
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921142|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_C03.
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1T3Q7|B1T3Q7_9BURK Putative uncharacterized protein OS=Burkh...    34   3.9  
tr|Q53PL8|Q53PL8_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.6  
tr|Q2RA87|Q2RA87_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    33   6.6  
tr|B8BJ93|B8BJ93_ORYSI Putative uncharacterized protein OS=Oryza...    33   6.6  
tr|Q1ZXA9|Q1ZXA9_DICDI NDT80/PhoG like DNA-binding domain-contai...    33   8.6  

>tr|B1T3Q7|B1T3Q7_9BURK Putative uncharacterized protein
           OS=Burkholderia ambifaria MEX-5 GN=BamMEX5DRAFT_2423
           PE=4 SV=1
          Length = 335

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
 Frame = -1

Query: 481 LKE*DSAARTKLCGSKNDMD-----VPKLRDPFDSSGQIEGKVRPAGHPHISLANAKETS 317
           L E  +  +++LC    D+      VPK      ++ ++EG VR +  P +S   ++  S
Sbjct: 126 LNEFRAQVKSRLCSEVEDLKDIRIHVPKAIRDLSAANKLEGWVRASSVPDVSPLISQLAS 185

Query: 316 LRARSNVNVTIKEQLDETLLEQSPSQLLGSLGKQHHSNGDVNVAERQQYLLQKQAEY 146
           L+A    N  +K        E  P+ L GS G       DV++A R  Y+  +++EY
Sbjct: 186 LQAE---NERLKAMAQTAKAE--PALLSGSSGGLSEERLDVSLALRFSYV--QESEY 235


>tr|Q53PL8|Q53PL8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_031742 PE=4 SV=1
          Length = 932

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = -1

Query: 412 LRDPFDSSGQIEGKVRPAGHPHISLANAKETSLRARSNVNVTIKEQLDETLLEQSPSQLL 233
           +R P DS   ++  ++ A  P +    A    L   +   ++ ++ +D+T + QS SQ +
Sbjct: 233 IRSPKDSPTNVDRHIQVAAEPSL----ATSADLLGSNTGTISEQDMIDDTTMVQSQSQGV 288

Query: 232 GSLGKQHHSNGD 197
            +    H++NGD
Sbjct: 289 KNPNTLHYNNGD 300


>tr|Q2RA87|Q2RA87_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0160700 PE=4 SV=1
          Length = 951

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = -1

Query: 412 LRDPFDSSGQIEGKVRPAGHPHISLANAKETSLRARSNVNVTIKEQLDETLLEQSPSQLL 233
           +R P DS   ++  ++ A  P +    A    L   +   ++ ++ +D+T + QS SQ +
Sbjct: 233 IRSPKDSPTNVDRHIQVAAEPSL----ATSADLLGSNTGTISEQDMIDDTTMVQSQSQGV 288

Query: 232 GSLGKQHHSNGD 197
            +    H++NGD
Sbjct: 289 KNPNTLHYNNGD 300


>tr|B8BJ93|B8BJ93_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35213 PE=4 SV=1
          Length = 951

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = -1

Query: 412 LRDPFDSSGQIEGKVRPAGHPHISLANAKETSLRARSNVNVTIKEQLDETLLEQSPSQLL 233
           +R P DS   ++  ++ A  P +    A    L   +   ++ ++ +D+T + QS SQ +
Sbjct: 233 IRSPKDSPTNVDRHIQVAAEPSL----ATSADLLGSNTGTISEQDMIDDTTMVQSQSQGV 288

Query: 232 GSLGKQHHSNGD 197
            +    H++NGD
Sbjct: 289 KNPNTLHYNNGD 300


>tr|Q1ZXA9|Q1ZXA9_DICDI NDT80/PhoG like DNA-binding
           domain-containing protein OS=Dictyostelium discoideum
           GN=DDB_0232147 PE=4 SV=1
          Length = 1133

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = -1

Query: 442 GSKNDMDVPKL-RDPFDSSGQIEGKVRPAGHPHISLANAKETSLRARSNVNVTIKEQLDE 266
           GS N+ D+ ++ R+   +  Q E  +    + + +  N    S    SN N  I  +   
Sbjct: 13  GSGNNQDIDEIKREQMSNFDQFEDGLN---NNNSNNNNNNNNSNNNNSNNNENINRKTGS 69

Query: 265 TLLEQSPSQLLGSLGKQHHSNGDVNVAERQQYLLQK 158
           TLL  S SQL  S G+   S   V   ++++Y++ K
Sbjct: 70  TLLSSSTSQLNSSSGQISFSKDAVAPTKKRRYIVDK 105