BP921146 |
Clone id |
YMU001_000146_C07 |
Library |
YMU01 |
Length |
588 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000146_C07. |
Accession |
BP921146 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4279Contig1 |
Sequence |
TTGAGATATTACCTGCAGGTACTCACTAAGCATGATGCTCCAATATGATTGGTACCAGCA ATGGGAATAGGCTCTATCCCATCTGTAGTACTCTCTACAATGGCCTCCTGAATCTCTTGC AAGGCAAGCAAGCGGTCCTCATCTTTTTCCTTATTGAGCATTTCCAATGTGACCTCCATT CTCTCATGGCCGTGCTCTTTGATTTTGGATATGAGTCTCAAGTTCGTGTGTATGTACACA AGCTTCTCTATATGAGATGGGAGTAGCCCTTTCTTCTCTTGGTATGAATGAGACCATGTG CAAAAAGTAAGGGCTCCTTACTTTCCATATAGGAACATCTTCAGCATAAAAAAACCTACG CAAGGCTTGGTTTGCTTGCTTCCGTGTTTGCAAGCCAAATGCACTTGCCAGACCCCGTTG AGCAACGTTCCTCTTCTTGCTTGAGGACCCCACATTGGACTTGGAAGAGCCACTTACATT AGTAGTTCCCTTAGCATGCGTACTCATTGAAGCACCTCCTTGAGCTTGAGAGGCGTCTCC TTCCAAATCATTGACCAATGCATCCACAAAAGTAGCTTTGTCTTCTCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LG26 |
Definition |
sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana |
Align length |
66 |
Score (bit) |
32.0 |
E-value |
2.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921146|Adiantum capillus-veneris mRNA, clone: YMU001_000146_C07. (588 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabi... 32 2.3 sp|Q9NU63|ZFP57_HUMAN Zinc finger protein 57 homolog OS=Homo sap... 32 3.1 sp|A3MZC2|HEM1_ACTP2 Glutamyl-tRNA reductase OS=Actinobacillus p... 32 3.1 sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitocho... 31 5.2 sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio... 30 6.8 sp|Q74HZ5|SYS_LACJO Seryl-tRNA synthetase OS=Lactobacillus johns... 30 8.9 sp|Q3J822|GREA_NITOC Transcription elongation factor greA OS=Nit... 30 8.9 sp|Q8C5W0|CLMN_MOUSE Calmin OS=Mus musculus GN=Clmn PE=1 SV=2 30 8.9 sp|Q6FXA4|ARGD_CANGA Acetylornithine aminotransferase, mitochond... 30 8.9
>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2 Length = 689
Score = 32.0 bits (71), Expect = 2.3 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -2
Query: 293 SHSYQEKKGLLPSHIEKLVYIHTNLRLISKIKEHGHERMEVTLEMLNKE-KDEDRLLALQ 117 SH + +L H LVYIH+N + S + + E L KE KDE + LA + Sbjct: 265 SHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAER 324
Query: 116 EIQEAI 99 +IQ AI Sbjct: 325 KIQSAI 330
>sp|Q9NU63|ZFP57_HUMAN Zinc finger protein 57 homolog OS=Homo sapiens GN=ZFP57 PE=2 SV=2 Length = 452
Score = 31.6 bits (70), Expect = 3.1 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = -3
Query: 391 ANTEASKPSLA*VFLC*RCSYMESKEPLLFAHGLIHTKRRKGYSHLI*RSLCTYTRT*DS 212 +N+ KPS VF C CS SK+ L H H Y +S +++R Sbjct: 287 SNSHPVKPSRLNVFCCPHCSLTFSKKSYLSRHQKAHLTEPPNYCFHCSKSFSSFSR---- 342
Query: 211 YPKSKSTAMREWRSHWK 161 +R ++HWK Sbjct: 343 -------LVRHQQTHWK 352
>sp|A3MZC2|HEM1_ACTP2 Glutamyl-tRNA reductase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=hemA PE=3 SV=1 Length = 436
Score = 31.6 bits (70), Expect = 3.1 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Frame = -1
Query: 402 AFGLQTRKQANQALRRFFYAEDVPIWKV--RSPYFLHMVSFIPREERATPISYREAC--- 238 AF Q R+ A + ++ AE V I R+ + H PREE I++RE C Sbjct: 22 AFDDQKRQLAFEQIQHRALAESVVILSTCNRTELYFHNAEITPREEHEDNIAWREQCFEW 81
Query: 237 -VHTHELE 217 H+LE Sbjct: 82 FAEIHQLE 89
>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1 Length = 385
Score = 30.8 bits (68), Expect = 5.2 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Frame = -2
Query: 281 QEKKGLLPSHIEKLVYI---HTNLRLISKIKEHGHERMEVTLEMLNKEKDEDRLLALQEI 111 QEK+ +L H+E++ I ++ ++ K+K+ G LE +NK L L+++ Sbjct: 254 QEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGSPFATKQLEAINKMSPTSLKLTLRQL 313
Query: 110 QEAIVESTTD 81 +E S D Sbjct: 314 REGATMSLQD 323
>sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio rerio GN=rest PE=2 SV=1 Length = 855
Score = 30.4 bits (67), Expect = 6.8 Identities = 25/108 (23%), Positives = 43/108 (39%) Frame = -3
Query: 433 EERCSTGSGKCIWLANTEASKPSLA*VFLC*RCSYMESKEPLLFAHGLIHTKRRKGYSHL 254 +E S +G + N E+++ + V C RC Y ++ AH HTK + + Sbjct: 177 DEDLSADAGPQTSVPNAESAESNSKGVIRCERCGYNTNRFDHYMAHLKHHTKEGED-QRV 235
Query: 253 I*RSLCTYTRT*DSYPKSKSTAMREWRSHWKCSIRKKMRTACLPCKRF 110 ++C YT + + W+ H + K+ T C C F Sbjct: 236 FKCTICAYT----------TISQYHWKKHLRNHFPSKLFT-CSQCSYF 272
>sp|Q74HZ5|SYS_LACJO Seryl-tRNA synthetase OS=Lactobacillus johnsonii GN=serS PE=3 SV=1 Length = 436
Score = 30.0 bits (66), Expect = 8.9 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = -2
Query: 296 WSHSYQEKKGLLPSHIEKLVYIHTNLR-LISKIKEHGHERMEVTLEML----NKEKDEDR 132 WS +G+ P ++KLV I R ++K ++ +R EV+ ++ NKE D Sbjct: 13 WSKKKLATRGIKPEELDKLVAIDKERREALTKSEQLKQKRNEVSDQIAQAKRNKEDASDA 72
Query: 131 LLALQEIQEAI 99 + A++E+ + I Sbjct: 73 IKAMREVGKEI 83
>sp|Q3J822|GREA_NITOC Transcription elongation factor greA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=greA PE=3 SV=1 Length = 158
Score = 30.0 bits (66), Expect = 8.9 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Frame = -2
Query: 290 HSYQEKKGLLPSHIEKLVY--IHTNLRLISKIKEHGHERMEVTLEMLNKEKDED 135 H+ +E++G + I L + H + +SK+++ G VT++++N E DE+ Sbjct: 49 HAAREEQGFVEGRIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLVNIETDEE 102
>sp|Q8C5W0|CLMN_MOUSE Calmin OS=Mus musculus GN=Clmn PE=1 SV=2 Length = 1052
Score = 30.0 bits (66), Expect = 8.9 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -2
Query: 200 KEHGHERMEVTLEMLNKEK---DEDRLLALQEIQEAIVESTTDGIEPIP 63 K+ GH V+L ++KEK +++ L L+ + + EST DG++ +P Sbjct: 462 KQDGH----VSLAEVSKEKKKSEQEARLVLEAASDKVPESTVDGLDAVP 506
>sp|Q6FXA4|ARGD_CANGA Acetylornithine aminotransferase, mitochondrial OS=Candida glabrata GN=ARG8 PE=3 SV=1 Length = 427
Score = 30.0 bits (66), Expect = 8.9 Identities = 31/112 (27%), Positives = 46/112 (41%) Frame = -2
Query: 395 ACKHGSKQTKPCVGFFMLKMFLYGK*GALTFCTWSHSYQEKKGLLPSHIEKLVYIHTNLR 216 A KHG + G + +G+ TW+ Y+ G L H+ +++ N Sbjct: 138 AKKHGITKNPKKQGIIAFENSFHGRTMGALSVTWNKKYRTPFGDLVPHVS---FLNINDE 194
Query: 215 LISKIKEHGHERMEVTLEMLNKEKDEDRLLALQEIQEAIVESTTDGIEPIPI 60 L SKIK + +N +KDE L ++ IQ GI PIPI Sbjct: 195 L-SKIK-----------DFINTKKDEIAGLIIEPIQ------GEGGIFPIPI 228
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
O64492 |
Definition |
tr|O64492|O64492_ARATH F20D22.8 protein OS=Arabidopsis thaliana |
Align length |
142 |
Score (bit) |
34.7 |
E-value |
4.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921146|Adiantum capillus-veneris mRNA, clone: YMU001_000146_C07. (588 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|O64492|O64492_ARATH F20D22.8 protein OS=Arabidopsis thaliana ... 35 4.1 tr|A0EG68|A0EG68_PARTE Chromosome undetermined scaffold_94, whol... 35 4.1 tr|A7CPD5|A7CPD5_9BACT Putative uncharacterized protein OS=Opitu... 34 5.3 tr|Q4N312|Q4N312_THEPA Putative uncharacterized protein OS=Theil... 34 5.3 tr|Q1E504|Q1E504_COCIM Rho-GTPase-activating protein OS=Coccidio... 34 5.3 tr|Q24Y79|Q24Y79_DESHY Putative uncharacterized protein OS=Desul... 34 7.0 tr|B8FTB0|B8FTB0_DESHD Diguanylate cyclase/phosphodiesterase wit... 34 7.0 tr|A3D9B5|A3D9B5_SHEB5 Sel1 domain protein repeat-containing pro... 28 9.2
>tr|O64492|O64492_ARATH F20D22.8 protein OS=Arabidopsis thaliana GN=At1g04150 PE=4 SV=1 Length = 1012
Score = 34.7 bits (78), Expect = 4.1 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 12/142 (8%) Frame = -2
Query: 482 LM*VALPSPMWGPQARRGTLLNGVWQVHLACKHGSKQTKPCVGFFMLKMFLYGK*GALTF 303 L+ ALPSPM GP R NG + L K+TKPC+G G Sbjct: 216 LVITALPSPMPGPGPRPIVYSNGSSEFSL------KETKPCLG------------GTSNG 257
Query: 302 CTWSHSYQEKKGLLPSHIEKLVYIHTNL----------RLISKIKEHGHERM--EVTLEM 159 S+++K +E++ Y++ N+ ++S++K + + +V+ Sbjct: 258 LGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLSVLGEVVSEVKLGNYRGVTKKVSSNS 317
Query: 158 LNKEKDEDRLLALQEIQEAIVE 93 N E ++ + + + IQ ++VE Sbjct: 318 SNPEWNQVFVFSKERIQSSVVE 339
>tr|A0EG68|A0EG68_PARTE Chromosome undetermined scaffold_94, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00026633001 PE=4 SV=1 Length = 762
Score = 34.7 bits (78), Expect = 4.1 Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Frame = -2
Query: 245 KLVYI-HTNLRLISKIKEHGHERMEVTLEMLNKEKDEDRL 129 +LVYI H + ++SKI EH +++E++L++LN D D++ Sbjct: 406 QLVYIKHEIIMVLSKILEHSTQQIEISLDILNSLLDNDQI 445
>tr|A7CPD5|A7CPD5_9BACT Putative uncharacterized protein OS=Opitutaceae bacterium TAV2 GN=ObacDRAFT_2058 PE=4 SV=1 Length = 2537
Score = 34.3 bits (77), Expect = 5.3 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Frame = -2
Query: 272 KGLLPSHIEKLVYIHTNLRLIS--KIKE---HGHERMEVTLEMLNKEKDEDRLLALQEIQ 108 +G+ E+ V+ H N RL+S KI+E G E + L LNK E+R A E Sbjct: 364 RGMARLQTERGVF-HYNPRLVSAAKIRELSAAGRENEILGLGPLNKSDVENRAAATGEPI 422
Query: 107 EAIVESTTDGIEPIPIAGT 51 AI E T DG+E GT Sbjct: 423 VAITERTPDGVEVKSAVGT 441
>tr|Q4N312|Q4N312_THEPA Putative uncharacterized protein OS=Theileria parva GN=TP04_0175 PE=4 SV=1 Length = 1186
Score = 34.3 bits (77), Expect = 5.3 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 9/70 (12%) Frame = +3
Query: 66 NRLYPICSTLYNGLLNLLQGKQAVLIFFLIEHFQC---------DLHSLMAVLFDFGYES 218 + L ICS+L N L + Q + I FL EHF C DL+SL ++ Y + Sbjct: 357 DELNSICSSLVNQLNSYCQPPLNISIRFL-EHFMCFEYLIEYSCDLNSLQNTIYGMSYIN 415
Query: 219 QVRVYVHKLL 248 + V +H+L+ Sbjct: 416 KENVILHELI 425
>tr|Q1E504|Q1E504_COCIM Rho-GTPase-activating protein OS=Coccidioides immitis GN=CIMG_02359 PE=4 SV=1 Length = 952
Score = 34.3 bits (77), Expect = 5.3 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 10/74 (13%) Frame = +3
Query: 48 IGTSNGNRLYPICSTLYNGLLNL--------LQGKQAVLI--FFLIEHFQCDLHSLMAVL 197 + +GN YP+C T Y LNL L+G + + IEHF C + + Sbjct: 144 VDAEDGNGQYPLCETDYFRRLNLICYECGGALRGSYITALDRKYHIEHFTCSVCPAIFGA 203
Query: 198 FDFGYESQVRVYVH 239 D YE +VY H Sbjct: 204 QDSYYEHDAKVYCH 217
>tr|Q24Y79|Q24Y79_DESHY Putative uncharacterized protein OS=Desulfitobacterium hafniense (strain Y51) GN=DSY1224 PE=4 SV=1 Length = 1002
Score = 33.9 bits (76), Expect = 7.0 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Frame = -2
Query: 254 HIEKLVYIHTNLRLISKIKEHGHERMEVTLEMLNKEKDE-----DRLLALQEIQEAIVES 90 +I + + + TNLR+ ++ HE + T E L ++ DE +L QE+QE ++E+ Sbjct: 398 NIRRRIKVETNLRIKNEEISAMHEELTATEEELRQQFDELLSNQRQLKETQELQELVLEA 457
Query: 89 TTDGI 75 D I Sbjct: 458 AIDAI 462
>tr|B8FTB0|B8FTB0_DESHD Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) OS=Desulfitobacterium hafniense (strain DCB-2) GN=Dhaf_2313 PE=3 SV=1 Length = 981
Score = 33.9 bits (76), Expect = 7.0 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Frame = -2
Query: 254 HIEKLVYIHTNLRLISKIKEHGHERMEVTLEMLNKEKDE-----DRLLALQEIQEAIVES 90 +I + + + TNLR+ ++ HE + T E L ++ DE +L QE+QE ++E+ Sbjct: 377 NIRRRIKVETNLRIKNEEISAMHEELTATEEELRQQFDELLSNQRQLKETQELQELVLEA 436
Query: 89 TTDGI 75 D I Sbjct: 437 AIDAI 441
>tr|A3D9B5|A3D9B5_SHEB5 Sel1 domain protein repeat-containing protein OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=Sbal_3857 PE=4 SV=1 Length = 511
Score = 27.7 bits (60), Expect(2) = 9.2 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1
Query: 360 RRFFYAEDVPIWKVRSPYFL 301 RRFFY ED P+ V++ Y+L Sbjct: 256 RRFFYGEDFPVDYVKARYWL 275
Score = 23.9 bits (50), Expect(2) = 9.2 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = -2
Query: 212 ISKIKEHGHERMEVTLE---MLNKEKDEDRLLALQEIQEAIVESTTDGIEPIPIAGTNHI 42 ++K E G+ +VTL +++ + D+D L A +E I+E D + + + Sbjct: 275 LTKSFEAGNSFAQVTLANLLLVDPQNDDDYLKAKNYYEELIIEWNEDALSGLGKIHEQGL 334
Query: 41 GAS 33 G S Sbjct: 335 GVS 337
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