BP921146
Clone id YMU001_000146_C07
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTGAGATATTACCTGCAGGTACTCACTAAGCATGATGCTCCAATATGATTGGTACCAGCA
ATGGGAATAGGCTCTATCCCATCTGTAGTACTCTCTACAATGGCCTCCTGAATCTCTTGC
AAGGCAAGCAAGCGGTCCTCATCTTTTTCCTTATTGAGCATTTCCAATGTGACCTCCATT
CTCTCATGGCCGTGCTCTTTGATTTTGGATATGAGTCTCAAGTTCGTGTGTATGTACACA
AGCTTCTCTATATGAGATGGGAGTAGCCCTTTCTTCTCTTGGTATGAATGAGACCATGTG
CAAAAAGTAAGGGCTCCTTACTTTCCATATAGGAACATCTTCAGCATAAAAAAACCTACG
CAAGGCTTGGTTTGCTTGCTTCCGTGTTTGCAAGCCAAATGCACTTGCCAGACCCCGTTG
AGCAACGTTCCTCTTCTTGCTTGAGGACCCCACATTGGACTTGGAAGAGCCACTTACATT
AGTAGTTCCCTTAGCATGCGTACTCATTGAAGCACCTCCTTGAGCTTGAGAGGCGTCTCC
TTCCAAATCATTGACCAATGCATCCACAAAAGTAGCTTTGTCTTCTCC
■■Homology search results ■■ -
sp_hit_id Q9LG26
Definition sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana
Align length 66
Score (bit) 32.0
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921146|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_C07.
(588 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabi... 32 2.3
sp|Q9NU63|ZFP57_HUMAN Zinc finger protein 57 homolog OS=Homo sap... 32 3.1
sp|A3MZC2|HEM1_ACTP2 Glutamyl-tRNA reductase OS=Actinobacillus p... 32 3.1
sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitocho... 31 5.2
sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio... 30 6.8
sp|Q74HZ5|SYS_LACJO Seryl-tRNA synthetase OS=Lactobacillus johns... 30 8.9
sp|Q3J822|GREA_NITOC Transcription elongation factor greA OS=Nit... 30 8.9
sp|Q8C5W0|CLMN_MOUSE Calmin OS=Mus musculus GN=Clmn PE=1 SV=2 30 8.9
sp|Q6FXA4|ARGD_CANGA Acetylornithine aminotransferase, mitochond... 30 8.9

>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN
OS=Arabidopsis thaliana GN=PARN PE=1 SV=2
Length = 689

Score = 32.0 bits (71), Expect = 2.3
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2

Query: 293 SHSYQEKKGLLPSHIEKLVYIHTNLRLISKIKEHGHERMEVTLEMLNKE-KDEDRLLALQ 117
SH + +L H LVYIH+N + S + + E L KE KDE + LA +
Sbjct: 265 SHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAER 324

Query: 116 EIQEAI 99
+IQ AI
Sbjct: 325 KIQSAI 330


>sp|Q9NU63|ZFP57_HUMAN Zinc finger protein 57 homolog OS=Homo
sapiens GN=ZFP57 PE=2 SV=2
Length = 452

Score = 31.6 bits (70), Expect = 3.1
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = -3

Query: 391 ANTEASKPSLA*VFLC*RCSYMESKEPLLFAHGLIHTKRRKGYSHLI*RSLCTYTRT*DS 212
+N+ KPS VF C CS SK+ L H H Y +S +++R
Sbjct: 287 SNSHPVKPSRLNVFCCPHCSLTFSKKSYLSRHQKAHLTEPPNYCFHCSKSFSSFSR---- 342

Query: 211 YPKSKSTAMREWRSHWK 161
+R ++HWK
Sbjct: 343 -------LVRHQQTHWK 352


>sp|A3MZC2|HEM1_ACTP2 Glutamyl-tRNA reductase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=hemA PE=3
SV=1
Length = 436

Score = 31.6 bits (70), Expect = 3.1
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -1

Query: 402 AFGLQTRKQANQALRRFFYAEDVPIWKV--RSPYFLHMVSFIPREERATPISYREAC--- 238
AF Q R+ A + ++ AE V I R+ + H PREE I++RE C
Sbjct: 22 AFDDQKRQLAFEQIQHRALAESVVILSTCNRTELYFHNAEITPREEHEDNIAWREQCFEW 81

Query: 237 -VHTHELE 217
H+LE
Sbjct: 82 FAEIHQLE 89


>sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase,
mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1
Length = 385

Score = 30.8 bits (68), Expect = 5.2
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -2

Query: 281 QEKKGLLPSHIEKLVYI---HTNLRLISKIKEHGHERMEVTLEMLNKEKDEDRLLALQEI 111
QEK+ +L H+E++ I ++ ++ K+K+ G LE +NK L L+++
Sbjct: 254 QEKEFVLDEHMERINSIFSANSMEEIVQKLKQDGSPFATKQLEAINKMSPTSLKLTLRQL 313

Query: 110 QEAIVESTTD 81
+E S D
Sbjct: 314 REGATMSLQD 323


>sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio
rerio GN=rest PE=2 SV=1
Length = 855

Score = 30.4 bits (67), Expect = 6.8
Identities = 25/108 (23%), Positives = 43/108 (39%)
Frame = -3

Query: 433 EERCSTGSGKCIWLANTEASKPSLA*VFLC*RCSYMESKEPLLFAHGLIHTKRRKGYSHL 254
+E S +G + N E+++ + V C RC Y ++ AH HTK + +
Sbjct: 177 DEDLSADAGPQTSVPNAESAESNSKGVIRCERCGYNTNRFDHYMAHLKHHTKEGED-QRV 235

Query: 253 I*RSLCTYTRT*DSYPKSKSTAMREWRSHWKCSIRKKMRTACLPCKRF 110
++C YT + + W+ H + K+ T C C F
Sbjct: 236 FKCTICAYT----------TISQYHWKKHLRNHFPSKLFT-CSQCSYF 272


>sp|Q74HZ5|SYS_LACJO Seryl-tRNA synthetase OS=Lactobacillus
johnsonii GN=serS PE=3 SV=1
Length = 436

Score = 30.0 bits (66), Expect = 8.9
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = -2

Query: 296 WSHSYQEKKGLLPSHIEKLVYIHTNLR-LISKIKEHGHERMEVTLEML----NKEKDEDR 132
WS +G+ P ++KLV I R ++K ++ +R EV+ ++ NKE D
Sbjct: 13 WSKKKLATRGIKPEELDKLVAIDKERREALTKSEQLKQKRNEVSDQIAQAKRNKEDASDA 72

Query: 131 LLALQEIQEAI 99
+ A++E+ + I
Sbjct: 73 IKAMREVGKEI 83


>sp|Q3J822|GREA_NITOC Transcription elongation factor greA
OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=greA PE=3 SV=1
Length = 158

Score = 30.0 bits (66), Expect = 8.9
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2

Query: 290 HSYQEKKGLLPSHIEKLVY--IHTNLRLISKIKEHGHERMEVTLEMLNKEKDED 135
H+ +E++G + I L + H + +SK+++ G VT++++N E DE+
Sbjct: 49 HAAREEQGFVEGRIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLVNIETDEE 102


>sp|Q8C5W0|CLMN_MOUSE Calmin OS=Mus musculus GN=Clmn PE=1 SV=2
Length = 1052

Score = 30.0 bits (66), Expect = 8.9
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -2

Query: 200 KEHGHERMEVTLEMLNKEK---DEDRLLALQEIQEAIVESTTDGIEPIP 63
K+ GH V+L ++KEK +++ L L+ + + EST DG++ +P
Sbjct: 462 KQDGH----VSLAEVSKEKKKSEQEARLVLEAASDKVPESTVDGLDAVP 506


>sp|Q6FXA4|ARGD_CANGA Acetylornithine aminotransferase,
mitochondrial OS=Candida glabrata GN=ARG8 PE=3 SV=1
Length = 427

Score = 30.0 bits (66), Expect = 8.9
Identities = 31/112 (27%), Positives = 46/112 (41%)
Frame = -2

Query: 395 ACKHGSKQTKPCVGFFMLKMFLYGK*GALTFCTWSHSYQEKKGLLPSHIEKLVYIHTNLR 216
A KHG + G + +G+ TW+ Y+ G L H+ +++ N
Sbjct: 138 AKKHGITKNPKKQGIIAFENSFHGRTMGALSVTWNKKYRTPFGDLVPHVS---FLNINDE 194

Query: 215 LISKIKEHGHERMEVTLEMLNKEKDEDRLLALQEIQEAIVESTTDGIEPIPI 60
L SKIK + +N +KDE L ++ IQ GI PIPI
Sbjct: 195 L-SKIK-----------DFINTKKDEIAGLIIEPIQ------GEGGIFPIPI 228


tr_hit_id O64492
Definition tr|O64492|O64492_ARATH F20D22.8 protein OS=Arabidopsis thaliana
Align length 142
Score (bit) 34.7
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921146|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_C07.
(588 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|O64492|O64492_ARATH F20D22.8 protein OS=Arabidopsis thaliana ... 35 4.1
tr|A0EG68|A0EG68_PARTE Chromosome undetermined scaffold_94, whol... 35 4.1
tr|A7CPD5|A7CPD5_9BACT Putative uncharacterized protein OS=Opitu... 34 5.3
tr|Q4N312|Q4N312_THEPA Putative uncharacterized protein OS=Theil... 34 5.3
tr|Q1E504|Q1E504_COCIM Rho-GTPase-activating protein OS=Coccidio... 34 5.3
tr|Q24Y79|Q24Y79_DESHY Putative uncharacterized protein OS=Desul... 34 7.0
tr|B8FTB0|B8FTB0_DESHD Diguanylate cyclase/phosphodiesterase wit... 34 7.0
tr|A3D9B5|A3D9B5_SHEB5 Sel1 domain protein repeat-containing pro... 28 9.2

>tr|O64492|O64492_ARATH F20D22.8 protein OS=Arabidopsis thaliana
GN=At1g04150 PE=4 SV=1
Length = 1012

Score = 34.7 bits (78), Expect = 4.1
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Frame = -2

Query: 482 LM*VALPSPMWGPQARRGTLLNGVWQVHLACKHGSKQTKPCVGFFMLKMFLYGK*GALTF 303
L+ ALPSPM GP R NG + L K+TKPC+G G
Sbjct: 216 LVITALPSPMPGPGPRPIVYSNGSSEFSL------KETKPCLG------------GTSNG 257

Query: 302 CTWSHSYQEKKGLLPSHIEKLVYIHTNL----------RLISKIKEHGHERM--EVTLEM 159
S+++K +E++ Y++ N+ ++S++K + + +V+
Sbjct: 258 LGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLSVLGEVVSEVKLGNYRGVTKKVSSNS 317

Query: 158 LNKEKDEDRLLALQEIQEAIVE 93
N E ++ + + + IQ ++VE
Sbjct: 318 SNPEWNQVFVFSKERIQSSVVE 339


>tr|A0EG68|A0EG68_PARTE Chromosome undetermined scaffold_94, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00026633001 PE=4 SV=1
Length = 762

Score = 34.7 bits (78), Expect = 4.1
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = -2

Query: 245 KLVYI-HTNLRLISKIKEHGHERMEVTLEMLNKEKDEDRL 129
+LVYI H + ++SKI EH +++E++L++LN D D++
Sbjct: 406 QLVYIKHEIIMVLSKILEHSTQQIEISLDILNSLLDNDQI 445


>tr|A7CPD5|A7CPD5_9BACT Putative uncharacterized protein
OS=Opitutaceae bacterium TAV2 GN=ObacDRAFT_2058 PE=4
SV=1
Length = 2537

Score = 34.3 bits (77), Expect = 5.3
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = -2

Query: 272 KGLLPSHIEKLVYIHTNLRLIS--KIKE---HGHERMEVTLEMLNKEKDEDRLLALQEIQ 108
+G+ E+ V+ H N RL+S KI+E G E + L LNK E+R A E
Sbjct: 364 RGMARLQTERGVF-HYNPRLVSAAKIRELSAAGRENEILGLGPLNKSDVENRAAATGEPI 422

Query: 107 EAIVESTTDGIEPIPIAGT 51
AI E T DG+E GT
Sbjct: 423 VAITERTPDGVEVKSAVGT 441


>tr|Q4N312|Q4N312_THEPA Putative uncharacterized protein
OS=Theileria parva GN=TP04_0175 PE=4 SV=1
Length = 1186

Score = 34.3 bits (77), Expect = 5.3
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Frame = +3

Query: 66 NRLYPICSTLYNGLLNLLQGKQAVLIFFLIEHFQC---------DLHSLMAVLFDFGYES 218
+ L ICS+L N L + Q + I FL EHF C DL+SL ++ Y +
Sbjct: 357 DELNSICSSLVNQLNSYCQPPLNISIRFL-EHFMCFEYLIEYSCDLNSLQNTIYGMSYIN 415

Query: 219 QVRVYVHKLL 248
+ V +H+L+
Sbjct: 416 KENVILHELI 425


>tr|Q1E504|Q1E504_COCIM Rho-GTPase-activating protein
OS=Coccidioides immitis GN=CIMG_02359 PE=4 SV=1
Length = 952

Score = 34.3 bits (77), Expect = 5.3
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Frame = +3

Query: 48 IGTSNGNRLYPICSTLYNGLLNL--------LQGKQAVLI--FFLIEHFQCDLHSLMAVL 197
+ +GN YP+C T Y LNL L+G + + IEHF C + +
Sbjct: 144 VDAEDGNGQYPLCETDYFRRLNLICYECGGALRGSYITALDRKYHIEHFTCSVCPAIFGA 203

Query: 198 FDFGYESQVRVYVH 239
D YE +VY H
Sbjct: 204 QDSYYEHDAKVYCH 217


>tr|Q24Y79|Q24Y79_DESHY Putative uncharacterized protein
OS=Desulfitobacterium hafniense (strain Y51) GN=DSY1224
PE=4 SV=1
Length = 1002

Score = 33.9 bits (76), Expect = 7.0
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -2

Query: 254 HIEKLVYIHTNLRLISKIKEHGHERMEVTLEMLNKEKDE-----DRLLALQEIQEAIVES 90
+I + + + TNLR+ ++ HE + T E L ++ DE +L QE+QE ++E+
Sbjct: 398 NIRRRIKVETNLRIKNEEISAMHEELTATEEELRQQFDELLSNQRQLKETQELQELVLEA 457

Query: 89 TTDGI 75
D I
Sbjct: 458 AIDAI 462


>tr|B8FTB0|B8FTB0_DESHD Diguanylate cyclase/phosphodiesterase with
PAS/PAC sensor(S) OS=Desulfitobacterium hafniense
(strain DCB-2) GN=Dhaf_2313 PE=3 SV=1
Length = 981

Score = 33.9 bits (76), Expect = 7.0
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -2

Query: 254 HIEKLVYIHTNLRLISKIKEHGHERMEVTLEMLNKEKDE-----DRLLALQEIQEAIVES 90
+I + + + TNLR+ ++ HE + T E L ++ DE +L QE+QE ++E+
Sbjct: 377 NIRRRIKVETNLRIKNEEISAMHEELTATEEELRQQFDELLSNQRQLKETQELQELVLEA 436

Query: 89 TTDGI 75
D I
Sbjct: 437 AIDAI 441


>tr|A3D9B5|A3D9B5_SHEB5 Sel1 domain protein repeat-containing
protein OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=Sbal_3857 PE=4 SV=1
Length = 511

Score = 27.7 bits (60), Expect(2) = 9.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1

Query: 360 RRFFYAEDVPIWKVRSPYFL 301
RRFFY ED P+ V++ Y+L
Sbjct: 256 RRFFYGEDFPVDYVKARYWL 275



Score = 23.9 bits (50), Expect(2) = 9.2
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -2

Query: 212 ISKIKEHGHERMEVTLE---MLNKEKDEDRLLALQEIQEAIVESTTDGIEPIPIAGTNHI 42
++K E G+ +VTL +++ + D+D L A +E I+E D + + +
Sbjct: 275 LTKSFEAGNSFAQVTLANLLLVDPQNDDDYLKAKNYYEELIIEWNEDALSGLGKIHEQGL 334

Query: 41 GAS 33
G S
Sbjct: 335 GVS 337