BP921152 |
Clone id |
YMU001_000146_D01 |
Library |
YMU01 |
Length |
511 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000146_D01. |
Accession |
BP921152 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTCCACCCTTTGCAACTAAGCTAGGCAGCTTTCTTCAAGCCACTTGTTGGATCTTCTAAA TTCACCCATATGTAGAAATTGAGGGTTGAAGCCAAAGTTATCCACAGTAAATAGGGTACC AGTAGATAGGCAGCGAGCAAATTGACATGCCAAAAAAGATAAAGAGTAGCTGCAATGGCT GTCCAAAGTAGTAGAATCTCCACCAATGCAAGACCAACTTGATGAAGACCAAAGAAGATT GGAGTCCACAAGAAATTCAATAATAGCTGAAACGTGTAGACTGCTAATGGTAAACTCTGT CCTTTAAATCCTCCATGAAGCCAAACCAGCCAAGAAGAGACACCCATCAGTGTATACAAG ATAGTCCAAACAACAGGAAAAGCCCAATTCGGAGGAGTCCATGAGGGCTTCTTGAGCTGT TTGTACCAGTCAGATTCACCGCCGTTGCTGAAAAGGGCGCTGATGAAGCTCACGCCCAGG GGAAAAGCAACGGCCACAATGAGGCCCACGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P30536 |
Definition |
sp|P30536|TSPO_HUMAN Translocator protein OS=Homo sapiens |
Align length |
150 |
Score (bit) |
105.0 |
E-value |
1.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921152|Adiantum capillus-veneris mRNA, clone: YMU001_000146_D01. (511 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P30536|TSPO_HUMAN Translocator protein OS=Homo sapiens GN=TSP... 105 1e-22 sp|P16257|TSPO_RAT Translocator protein OS=Rattus norvegicus GN=... 104 3e-22 sp|P50637|TSPO_MOUSE Translocator protein OS=Mus musculus GN=Tsp... 102 8e-22 sp|P17057|CRTK_RHOCA Protein crtK OS=Rhodobacter capsulatus GN=c... 100 7e-21 sp|Q6UN27|TSPO_PIG Translocator protein OS=Sus scrofa GN=TSPO PE... 99 2e-20 sp|P30535|TSPO_BOVIN Translocator protein OS=Bos taurus GN=TSPO ... 96 7e-20 sp|Q9GMC9|TSPO_SHEEP Translocator protein OS=Ovis aries GN=TSPO ... 94 4e-19 sp|Q9CRZ8|BZRL1_MOUSE Peripheral-type benzodiazepine receptor-li... 67 4e-11 sp|Q5TGU0|BZRL1_HUMAN Peripheral-type benzodiazepine receptor-li... 61 3e-09 sp|O94327|TSPO_SCHPO Translocator protein homolog OS=Schizosacch... 53 9e-07 sp|A2BVA8|COXX_PROM5 Protoheme IX farnesyltransferase OS=Prochlo... 34 0.35 sp|Q7V2M7|COXX_PROMP Protoheme IX farnesyltransferase OS=Prochlo... 34 0.45 sp|A2BPT0|COXX_PROMS Protoheme IX farnesyltransferase OS=Prochlo... 31 2.9 sp|A8G3G2|COXX_PROM2 Protoheme IX farnesyltransferase OS=Prochlo... 31 2.9 sp|A3PBH0|COXX_PROM0 Protoheme IX farnesyltransferase OS=Prochlo... 31 2.9 sp|Q95K37|SPT18_MACFA Spermatogenesis-associated protein 18 OS=M... 31 3.8 sp|A2ALU4|SHRM2_MOUSE Protein Shroom2 OS=Mus musculus GN=Shroom2... 31 3.8 sp|A2AKG8|K1797_MOUSE Uncharacterized protein KIAA1797 OS=Mus mu... 30 5.0 sp|Q31C87|COXX_PROM9 Protoheme IX farnesyltransferase OS=Prochlo... 30 5.0 sp|Q50274|LIPA_MYCPU Lipoprotein A OS=Mycoplasma pulmonis GN=lip... 30 6.5 sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis... 30 6.6 sp|P57544|CYOA_BUCAI Ubiquinol oxidase subunit 2 OS=Buchnera aph... 30 8.6
>sp|P30536|TSPO_HUMAN Translocator protein OS=Homo sapiens GN=TSPO PE=1 SV=2 Length = 169
Score = 105 bits (262), Expect = 1e-22 Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 5/150 (3%) Frame = -3
Query: 500 IVAVAFPLGVS---FISALFSNGGESDWYKQLKKPSWTPPNWAFPVVWTILYTLMGVSSW 330 + A+ F L S F+ + F +G WY L+KPSW PP+W VW LY+ MG S+ Sbjct: 6 VPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSY 65
Query: 329 LVWLH-GGFKGQS-LPLAVYTFQLLLNFLWTPIFFGLHQVGLALVEXXXXXXXXXXXXXL 156 LVW GGF ++ +PL +YT QL LN+ W PIFFG Q+G ALV+ Sbjct: 66 LVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVA 125
Query: 155 FWHVNXXXXXXXXXXXLWITLASTLNFYIW 66 ++ V+ W+ A+TLN+ +W Sbjct: 126 WYQVSPLAARLLYPYLAWLAFATTLNYCVW 155
>sp|P16257|TSPO_RAT Translocator protein OS=Rattus norvegicus GN=Tspo PE=1 SV=1 Length = 169
Score = 104 bits (259), Expect = 3e-22 Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Frame = -3
Query: 467 FISALFSNGGESDWYKQLKKPSWTPPNWAFPVVWTILYTLMGVSSWLVWLH-GGFKGQSL 291 F+ A F G WY L+KPSW PP W +W LY+ MG S+++W GGF +++ Sbjct: 20 FMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIIWKELGGFTEEAM 79
Query: 290 -PLAVYTFQLLLNFLWTPIFFGLHQVGLALVEXXXXXXXXXXXXXLFWHVNXXXXXXXXX 114 PL +YT QL LN+ W PIFFG Q+G ALV+ + V+ Sbjct: 80 VPLGLYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLAWHRVSPPAARLLYP 139
Query: 113 XXLWITLASTLNFYIW 66 W+ A+ LN+Y+W Sbjct: 140 YLAWLAFATMLNYYVW 155
>sp|P50637|TSPO_MOUSE Translocator protein OS=Mus musculus GN=Tspo PE=2 SV=1 Length = 169
Score = 102 bits (255), Expect = 8e-22 Identities = 50/136 (36%), Positives = 68/136 (50%), Gaps = 2/136 (1%) Frame = -3
Query: 467 FISALFSNGGESDWYKQLKKPSWTPPNWAFPVVWTILYTLMGVSSWLVWLH-GGFKGQSL 291 F+ A F G WY L+KPSW PP W +W LY+ MG S++VW GGF ++ Sbjct: 20 FMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAM 79
Query: 290 -PLAVYTFQLLLNFLWTPIFFGLHQVGLALVEXXXXXXXXXXXXXLFWHVNXXXXXXXXX 114 PL +YT QL LN+ W PIFFG Q+G AL + + V+ Sbjct: 80 VPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYP 139
Query: 113 XXLWITLASTLNFYIW 66 W+ A+ LN+Y+W Sbjct: 140 YLAWLAFATVLNYYVW 155
>sp|P17057|CRTK_RHOCA Protein crtK OS=Rhodobacter capsulatus GN=crtK PE=3 SV=1 Length = 160
Score = 99.8 bits (247), Expect = 7e-21 Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Frame = -3
Query: 458 ALFSNGGESDWYKQLKKPSWTPPNWAFPVVWTILYTLMGVSSWLVWLHGGFKGQS----L 291 A+FS G WY LKKPSW PPNW FPV W+ LY LM +S+ V G ++ L Sbjct: 21 AIFSPGA---WYDSLKKPSWVPPNWLFPVAWSTLYILMSISAARV---SGLAMENELAVL 74
Query: 290 PLAVYTFQLLLNFLWTPIFFGLHQVGLALVEXXXXXXXXXXXXXLFWHVNXXXXXXXXXX 111 LA + Q+ +N LWTPIFFGLH++ ++ LFW V+ Sbjct: 75 GLAFWAVQIAVNTLWTPIFFGLHRLAGGMLVLVLLWLSVFATCVLFWSVDWLSGLMFVPY 134
Query: 110 XLWITLASTLNFYIW 66 +W+T+A LNF +W Sbjct: 135 VIWVTVAGALNFSVW 149
>sp|Q6UN27|TSPO_PIG Translocator protein OS=Sus scrofa GN=TSPO PE=2 SV=1 Length = 169
Score = 98.6 bits (244), Expect = 2e-20 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Frame = -3
Query: 494 AVAFPLGVS---FISALFSNGGESDWYKQLKKPSWTPPNWAFPVVWTILYTLMGVSSWLV 324 AV F L S F+S+ G WY L+KPSW PP+W +W LY+ MG S+++ Sbjct: 8 AVGFTLVPSLGGFLSSRNVLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMI 67
Query: 323 WLH-GGFKGQS-LPLAVYTFQLLLNFLWTPIFFGLHQVGLALVEXXXXXXXXXXXXXLFW 150 W GGF ++ +PL +Y QL LN+ W P+FFG Q+G ALV+ ++ Sbjct: 68 WKELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGARQMGWALVDLVLTGGVAAATAVAWY 127
Query: 149 HVNXXXXXXXXXXXLWITLASTLNFYIW 66 V+ W+ A+TLN+ +W Sbjct: 128 QVSPLAARLLYPYLAWLAFAATLNYCVW 155
>sp|P30535|TSPO_BOVIN Translocator protein OS=Bos taurus GN=TSPO PE=2 SV=1 Length = 169
Score = 96.3 bits (238), Expect = 7e-20 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 5/159 (3%) Frame = -3
Query: 500 IVAVAFPLGVS---FISALFSNGGESDWYKQLKKPSWTPPNWAFPVVWTILYTLMGVSSW 330 + AV F L S F+ A ++ G WY L+KP W PP W +W LY+ MG S+ Sbjct: 6 VPAVGFTLLPSLGGFLGAQYTRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSY 65
Query: 329 LVWLH-GGFKGQS-LPLAVYTFQLLLNFLWTPIFFGLHQVGLALVEXXXXXXXXXXXXXL 156 ++W GGF ++ +PL +Y QL LN+ W P+FFG Q+G ALV+ Sbjct: 66 MIWKELGGFSKEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGMAAATAMA 125
Query: 155 FWHVNXXXXXXXXXXXLWITLASTLNFYIWVNLEDPTSG 39 + V+ W+ A LN+ +W + + SG Sbjct: 126 WHQVSPPAACLLYPYLAWLAFAGMLNYRMWQDNQVRRSG 164
>sp|Q9GMC9|TSPO_SHEEP Translocator protein OS=Ovis aries GN=TSPO PE=1 SV=1 Length = 169
Score = 94.0 bits (232), Expect = 4e-19 Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 5/159 (3%) Frame = -3
Query: 500 IVAVAFPLGVS---FISALFSNGGESDWYKQLKKPSWTPPNWAFPVVWTILYTLMGVSSW 330 + AV F L S F+ + G WY L+KP W PP W +W LY+ MG S+ Sbjct: 6 VPAVGFTLVPSPGGFLGTQYIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSY 65
Query: 329 LVWLH-GGFKGQS-LPLAVYTFQLLLNFLWTPIFFGLHQVGLALVEXXXXXXXXXXXXXL 156 L+W GGF ++ +PL +Y QL LN+ W P+FFG Q+G A V+ Sbjct: 66 LIWKELGGFSKEAVVPLGLYAGQLALNWAWPPLFFGARQMGWAFVDLLLTGGMAAATAMA 125
Query: 155 FWHVNXXXXXXXXXXXLWITLASTLNFYIWVNLEDPTSG 39 + V+ W+ A+ LN+ +W + + SG Sbjct: 126 WRQVSPPAACLLYPYLAWLAFAAMLNYRMWQDNQGRRSG 164
>sp|Q9CRZ8|BZRL1_MOUSE Peripheral-type benzodiazepine receptor-like protein 1 OS=Mus musculus GN=Bzrpl1 PE=2 SV=2 Length = 162
Score = 67.4 bits (163), Expect = 4e-11 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 3/126 (2%) Frame = -3
Query: 413 KKPSWTPPNWAFPVVWTILYTLMGVSSWLVW--LHGGFKGQ-SLPLAVYTFQLLLNFLWT 243 +K W PP+ +VW +Y++MG +S+LVW L GGF+ +LPL +Y+FQL L++ + Sbjct: 34 RKLPWCPPHKVILLVWVTIYSVMGYASYLVWKELGGGFRWPLALPLGLYSFQLALSWTFL 93
Query: 242 PIFFGLHQVGLALVEXXXXXXXXXXXXXLFWHVNXXXXXXXXXXXLWITLASTLNFYIWV 63 +F GLAL++ ++ +N W+T+ + + + +W Sbjct: 94 VLFLAADSPGLALLDLLLLYGLVASLVFIWQPINKLAALLLLPYLAWLTVTTAITYRLWR 153
Query: 62 NLEDPT 45 + PT Sbjct: 154 DSLCPT 159
>sp|Q5TGU0|BZRL1_HUMAN Peripheral-type benzodiazepine receptor-like protein 1 OS=Homo sapiens GN=BZRPL1 PE=2 SV=1 Length = 170
Score = 60.8 bits (146), Expect = 3e-09 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 3/133 (2%) Frame = -3
Query: 455 LFSNGGESDWYKQLKKPSWTPPNWAFPVVWTILYTLMGVSSWLVW--LHGGFKGQ-SLPL 285 LF+ S W + + SW P +V T +Y+++G +S+LVW L GG +LPL Sbjct: 21 LFTRDHMSGWCEGPRMLSWCPFYKVLLLVQTAIYSVVGYASYLVWKDLGGGLGWPLALPL 80
Query: 284 AVYTFQLLLNFLWTPIFFGLHQVGLALVEXXXXXXXXXXXXXLFWHVNXXXXXXXXXXXL 105 +Y QL +++ +FF +H GLAL+ ++ +N Sbjct: 81 GLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYGLVVSTALIWHPINKLAALLLLPYLA 140
Query: 104 WITLASTLNFYIW 66 W+T+ S L +++W Sbjct: 141 WLTVTSALTYHLW 153
>sp|O94327|TSPO_SCHPO Translocator protein homolog OS=Schizosaccharomyces pombe GN=SPBC725.10 PE=2 SV=1 Length = 162
Score = 52.8 bits (125), Expect = 9e-07 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Frame = -3
Query: 425 YKQLKKPSWTPPNWAFPVVWTILYTLMGVSSWLVWLHGGFKGQSLPLA--------VYTF 270 Y+ K+P + PP AF WT+LY MG +S H +K L + +Y Sbjct: 39 YENKKQPKFHPPASAFGPAWTLLYLTMGYAS-----HLAYKADPLMITNASRNGSILYIA 93
Query: 269 QLLLNFLWTPIFFGLHQVGLALVE 198 QL NF W P+F+GL + LAL + Sbjct: 94 QLAANFAWMPLFYGLAKPKLALAD 117
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NLM9 |
Definition |
tr|A9NLM9|A9NLM9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
150 |
Score (bit) |
186.0 |
E-value |
7.0e-46 |
Report |
|