BP921154
Clone id YMU001_000146_D03
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAAGAATTCGCGCGGCTCCTCGGGAATGGAGCTGTCCCCCCCATCACTAGCATTGCAGAG
CAGTTGAGTGGGACTGCTCTCCGCGCTGATCATCTCAGAATCACTATTATCGACTTGCTC
AGCACAAGTTTGGCCAATCCTCTGATTAACAATTCTTGCTGATGCCTTATCTGGAAGTGT
AAATATTAAGCCAACCAGCCAATCCAATGCAGATGCAACTTCTGCAATGAAGTCGATAAT
ATCCACTTTTCCTTGCACAAGACTGTTACATAGATTTATTAGACTTTCTACACAAGCATC
CAGACCAGAGCTTCTCCATTGCTTCCACGGGCTGGAGAATTCAGGCATTCCATCATTCTC
AAGGGATGGAGCTGAAATCCACTCTGCGTAAGGGAAATTATAGTCTGTCTGGCCAATACT
CTCCACTATGTCAAGAACCTTCCGCACTGCTGCAGCTAAATCTGCACCAATACCACAAAT
TTCTGTTTCTGATGTCCGGAGAGAAACTGGGTCTGCAGGAGAAGTAAAATTA
■■Homology search results ■■ -
sp_hit_id Q9SLN1
Definition sp|Q9SLN1|FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis thaliana
Align length 103
Score (bit) 48.5
E-value 2.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921154|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_D03.
(518 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9SLN1|FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsi... 49 2e-05
sp|Q8BLK9|KS6C1_MOUSE Ribosomal protein S6 kinase delta-1 OS=Mus... 33 0.61
sp|Q12TI1|Y2394_METBU UPF0103 protein Mbur_2394 OS=Methanococcoi... 32 2.3
sp|Q17RW2|COOA1_HUMAN Collagen alpha-1(XXIV) chain OS=Homo sapie... 32 2.3
sp|Q9VR56|RG9D2_DROME RNA (guanine-9-)-methyltransferase domain-... 31 3.0
sp|P25588|MRC1_YEAST Mediator of replication checkpoint protein ... 30 5.2
sp|Q9AV97|KDSA_ARATH 2-dehydro-3-deoxyphosphooctonate aldolase O... 30 6.8
sp|Q05192|FTF1B_DROME Nuclear hormone receptor FTZ-F1 beta OS=Dr... 30 6.8
sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus ... 30 8.8
sp|Q8K9P4|ISPG_BUCAP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate... 30 8.8
sp|Q7TMA5|APOB_RAT Apolipoprotein B-100 OS=Rattus norvegicus GN=... 30 8.8

>sp|Q9SLN1|FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis
thaliana GN=FPP7 PE=2 SV=1
Length = 886

Score = 48.5 bits (114), Expect = 2e-05
Identities = 21/103 (20%), Positives = 55/103 (53%)
Frame = -2

Query: 448 DLAAAVRKVLDIVESIGQTDYNFPYAEWISAPSLENDGMPEFSSPWKQWRSSGLDACVES 269
+++ ++ +++D++E + D + E++ + +++ QW+++ L + ++
Sbjct: 535 NISKSIHRIIDVIEGVSLKDERH-------VSNRESERLSGYTARVLQWKTTELSSVLQR 587

Query: 268 LINLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTLPDKASAR 140
+ C L+ K D+ F E++S L+W+V F+L D ++ R
Sbjct: 588 FLQACYDLLDRKADMKKFAQELSSVLEWMVNHCFSLQDVSTMR 630


>sp|Q8BLK9|KS6C1_MOUSE Ribosomal protein S6 kinase delta-1 OS=Mus
musculus GN=Rps6kc1 PE=1 SV=2
Length = 1056

Score = 33.5 bits (75), Expect = 0.61
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2

Query: 346 ENDGMPEFSSPWKQWRSSGLDACVESLINLCNSLVQGKVDIIDFIAE 206
E+DG P S W SS D C + LCN Q K+D++ E
Sbjct: 486 EDDGQPS-SPKWLDSGSSSEDECTAGYLTLCNEYGQEKMDLVSLSEE 531


>sp|Q12TI1|Y2394_METBU UPF0103 protein Mbur_2394 OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_2394 PE=3 SV=1
Length = 264

Score = 31.6 bits (70), Expect = 2.3
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3

Query: 258 RFIRLSTQASRPELLHCFHGLE 323
+F LST+A R E++ CFHGLE
Sbjct: 9 KFYPLSTKALRKEIVKCFHGLE 30


>sp|Q17RW2|COOA1_HUMAN Collagen alpha-1(XXIV) chain OS=Homo sapiens
GN=COL24A1 PE=2 SV=1
Length = 1714

Score = 31.6 bits (70), Expect = 2.3
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Frame = -2

Query: 337 GMPEFSSPWKQWR-SSGLDACVESLINL-CNSLVQGKVDIIDFIAEVASALDWLVGLIFT 164
G P P KQ ++ + A +ES L S +V +ID E+ L++L L+ +
Sbjct: 1471 GPPGAPGPRKQMDINAAIQALIESNTALQMESYQNTEVTLIDHSEEIFKTLNYLSNLLHS 1530

Query: 163 LPDKASARIVNQRIGQ---TCAEQVDNSD---SEMISAESSPTQLLCNASDGGDSSIP 8
+ + R RI + C ++V + + S ++ CN S GG + +P
Sbjct: 1531 IKNPLGTRDNPARICKDLLNCEQKVSDGKYWIDPNLGCPSDAIEVFCNFSAGGQTCLP 1588


>sp|Q9VR56|RG9D2_DROME RNA (guanine-9-)-methyltransferase
domain-containing protein 2 homolog OS=Drosophila
melanogaster GN=CG14618 PE=2 SV=1
Length = 319

Score = 31.2 bits (69), Expect = 3.0
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2

Query: 226 IIDFIAEVASALDWLVGLIFTLPDK--ASARIVNQRIGQTCAEQVDNSDSEMISAESSPT 53
+ + + +VA+ DW ++ T+P + A A+I +++ C EQ D + AES
Sbjct: 246 VFELLTKVAAGQDWTTAILETIPMRKGAKAKITDKKEPNHCLEQQDEKQKQ--EAESDKP 303

Query: 52 QLLCNASD 29
L S+
Sbjct: 304 TLTAVESE 311


>sp|P25588|MRC1_YEAST Mediator of replication checkpoint protein 1
OS=Saccharomyces cerevisiae GN=MRC1 PE=1 SV=3
Length = 1096

Score = 30.4 bits (67), Expect = 5.2
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -2

Query: 184 LVGLIFTLPDKASARIVNQRIGQTCAEQVDNSDSEMISAESSPTQLLCNASDGGD 20
L G F + R+ N+ G+ EQ N+ + S S PTQL+ N DGG+
Sbjct: 48 LTGNGFLFANATLNRVKNRLEGKKAPEQNHNNGKDR-SENSLPTQLISNLYDGGE 101


>sp|Q9AV97|KDSA_ARATH 2-dehydro-3-deoxyphosphooctonate aldolase
OS=Arabidopsis thaliana GN=KDSA PE=2 SV=2
Length = 290

Score = 30.0 bits (66), Expect = 6.8
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2

Query: 238 GKV-DIIDFIAEVASALDWLVGLIFTLPDKASARIVNQRIGQTCAEQVDNSDSEMISAES 62
GKV DII A + D LV T +I+N + GQ CA V + +E I
Sbjct: 104 GKVADIIQIPAFLCRQTDLLVAAAQT------GKIINIKKGQFCAPSVMENSAEKIRLAG 157

Query: 61 SPTQLLC 41
+P ++C
Sbjct: 158 NPNVMVC 164


>sp|Q05192|FTF1B_DROME Nuclear hormone receptor FTZ-F1 beta
OS=Drosophila melanogaster GN=Hr39 PE=1 SV=3
Length = 808

Score = 30.0 bits (66), Expect = 6.8
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -2

Query: 307 QWRSSGLDACVESLINLCNSLVQGKVDIIDFIA 209
Q +S+GL C+E ++NL + L + +VD +++A
Sbjct: 688 QAKSNGLQTCIERMLNLTDHLRRLRVDRYEYVA 720


>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus
GN=Rnf44 PE=2 SV=1
Length = 350

Score = 29.6 bits (65), Expect = 8.8
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Frame = +1

Query: 256 IDLLDFLHKHP-DQSFSIAST---GWRIQAFHHSQGMELKSTLRKGNYSLSGQYSPLCQE 423
+DL D +H+ P S+++ + G+ + A H G + L + SGQ+ PLC
Sbjct: 13 VDLHDQVHQGPVPLSYTVTTVTTQGFPLPASQHIPGCSAQQ-LPACSVMFSGQHYPLCCL 71

Query: 424 PSALLQLNLHQ-----YHKFLFLMSGE 489
P L+Q Q YH + L+S +
Sbjct: 72 PPPLIQACTMQQLPVPYHTYPHLISSD 98


>sp|Q8K9P4|ISPG_BUCAP 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase OS=Buchnera aphidicola subsp. Schizaphis
graminum GN=ispG PE=3 SV=1
Length = 367

Score = 29.6 bits (65), Expect = 8.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2

Query: 430 RKVLDIVESIGQTDYNFPYAEWISAPSLENDGMPEFSSP 314
R++LDIV D N P ++A SLEND + ++ SP
Sbjct: 116 RRILDIVNCA--KDKNIPIRIGVNAGSLENDLLKKYKSP 152


tr_hit_id A5BFY8
Definition tr|A5BFY8|A5BFY8_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 120
Score (bit) 55.5
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921154|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_D03.
(518 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5BFY8|A5BFY8_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06
tr|A9T990|A9T990_PHYPA Predicted protein OS=Physcomitrella paten... 55 2e-06
tr|A5C0S3|A5C0S3_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06
tr|A7PLD9|A7PLD9_VITVI Chromosome chr7 scaffold_20, whole genome... 54 5e-06
tr|Q7XT52|Q7XT52_ORYSJ Os04g0649200 protein OS=Oryza sativa subs... 45 0.003
tr|Q25AN2|Q25AN2_ORYSA H0212B02.1 protein OS=Oryza sativa GN=H02... 45 0.003
tr|B8AVK0|B8AVK0_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003
tr|A3AY25|A3AY25_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.003
tr|A8IRY2|A8IRY2_CHLRE Predicted protein OS=Chlamydomonas reinha... 35 2.2
tr|B3ED01|B3ED01_CHLL2 Putative uncharacterized protein OS=Chlor... 35 2.9
tr|Q6SFY4|Q6SFY4_9BACT Leucyl-tRNA synthetase OS=uncultured mari... 35 2.9
tr|A0YRI9|A0YRI9_9CYAN Putative uncharacterized protein OS=Lyngb... 34 5.0
tr|Q8EGX3|Q8EGX3_SHEON Putative uncharacterized protein OS=Shewa... 33 6.5
tr|A2E858|A2E858_TRIVA Putative uncharacterized protein OS=Trich... 33 6.5

>tr|A5BFY8|A5BFY8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_042269 PE=4 SV=1
Length = 1124

Score = 55.5 bits (132), Expect = 2e-06
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Frame = -2

Query: 481 TSETEICGIGADLAAAVRKVLDIVESIGQTDYNFPYAEWISA------PSLENDGMPEFS 320
+SET + +DL+ ++ K+++++E I ++ E S P ++ +
Sbjct: 616 SSETSNQKLQSDLSKSICKMVELIEGISLPSLDYDTQETFSRKDGSFFPHKNSETPTGYV 675

Query: 319 SPWKQWRSSGLDACVESLINLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTLPDKASAR 140
QW++S L + + ++ C+ L+ GK D+ F E+ SALDW++ F+L D +S +
Sbjct: 676 VRVFQWKTSELRSVLNQFVHSCDDLLNGKADLEKFARELTSALDWIMNHCFSLQDVSSMK 735


>tr|A9T990|A9T990_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_89752 PE=4 SV=1
Length = 1213

Score = 55.1 bits (131), Expect = 2e-06
Identities = 36/109 (33%), Positives = 58/109 (53%)
Frame = -2

Query: 499 DPVSLRTSETEICGIGADLAAAVRKVLDIVESIGQTDYNFPYAEWISAPSLENDGMPEFS 320
+ S+ +E++ +LA AVRK+ VE + Q +S P L + E S
Sbjct: 618 EQASISDAESKADSPHLELAIAVRKIFHSVEMLYQATGYSCTPSVMSLPKLITN---EIS 674

Query: 319 SPWKQWRSSGLDACVESLINLCNSLVQGKVDIIDFIAEVASALDWLVGL 173
+ +WR+ GL + +L ++ N L+QG+ D IDFI EV + LD++V L
Sbjct: 675 LRY-EWRNPGLKTILRNLAHVSNMLLQGQTDFIDFIVEVGTVLDYIVSL 722


>tr|A5C0S3|A5C0S3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_025322 PE=4 SV=1
Length = 999

Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Frame = -2

Query: 451 ADLAAAVRKVLDIVESIGQTDYNFPYAEWISAPSLENDGMPEFSSPWK------------ 308
+DL+ ++ K++++++S T +AP+ ++G + SSP K
Sbjct: 624 SDLSKSICKIIELIKSFNLTSLTNS-----NAPNEGSEG-DKSSSPCKNSPTPADYLVHV 677

Query: 307 -QWRSSGLDACVESLINLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTLPDKASAR 140
+W+SS L + + LIN+CN L+ K D+ +F+ E+A L W++ TL D +S R
Sbjct: 678 FRWKSSELSSVLFQLINICNDLLSEKADLENFVGELAFTLHWIMSNCITLQDGSSMR 734


>tr|A7PLD9|A7PLD9_VITVI Chromosome chr7 scaffold_20, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019532001
PE=4 SV=1
Length = 508

Score = 53.9 bits (128), Expect = 5e-06
Identities = 32/118 (27%), Positives = 61/118 (51%)
Frame = -2

Query: 493 VSLRTSETEICGIGADLAAAVRKVLDIVESIGQTDYNFPYAEWISAPSLENDGMPEFSSP 314
VS R + I I +DL+ ++ K+++++E I F + P ++ +
Sbjct: 366 VSQRNPDEIIEDIRSDLSKSICKMVELIEGIK----TFSRKDGSFFPHKNSETPTGYVVR 421

Query: 313 WKQWRSSGLDACVESLINLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTLPDKASAR 140
QW++S L + + ++ C+ L+ GK D+ F E+ SALDW++ F+L D +S +
Sbjct: 422 VFQWKTSELRSVLNQFVHSCDDLLNGKADLEKFARELTSALDWIMNHCFSLQDVSSMK 479


>tr|Q7XT52|Q7XT52_ORYSJ Os04g0649200 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0010D21.14 PE=2 SV=2
Length = 916

Score = 44.7 bits (104), Expect = 0.003
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Frame = -2

Query: 436 AVRKVLDIVESIGQT---DYNFPYAEWISAPSLENDGMPEFSSPWKQWRSSGLDACVESL 266
AV K+++++E + Q DY+ + ++ + + + W++S L + +++
Sbjct: 490 AVLKLIELIEGVVQRSSKDYSSTVVLSGGSEGDRSNTLTGYVARAFLWKTSELTSVLQNF 549

Query: 265 INLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTLPDKASAR 140
+ CN L+ G D+ F+ E+ LDW++ F+L D + R
Sbjct: 550 VLGCNELLYGSTDVERFVLEINITLDWIISHCFSLQDVSDMR 591


>tr|Q25AN2|Q25AN2_ORYSA H0212B02.1 protein OS=Oryza sativa
GN=H0212B02.1 PE=4 SV=1
Length = 993

Score = 44.7 bits (104), Expect = 0.003
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Frame = -2

Query: 436 AVRKVLDIVESIGQT---DYNFPYAEWISAPSLENDGMPEFSSPWKQWRSSGLDACVESL 266
AV K+++++E + Q DY+ + ++ + + + W++S L + +++
Sbjct: 567 AVLKLIELIEGVVQRSSKDYSSTVVLSGGSEGDRSNTLTGYVARAFLWKTSELTSVLQNF 626

Query: 265 INLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTLPDKASAR 140
+ CN L+ G D+ F+ E+ LDW++ F+L D + R
Sbjct: 627 VLGCNELLYGSTDVERFVLEINITLDWIISHCFSLQDVSDMR 668


>tr|B8AVK0|B8AVK0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_17686 PE=4 SV=1
Length = 916

Score = 44.7 bits (104), Expect = 0.003
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Frame = -2

Query: 436 AVRKVLDIVESIGQT---DYNFPYAEWISAPSLENDGMPEFSSPWKQWRSSGLDACVESL 266
AV K+++++E + Q DY+ + ++ + + + W++S L + +++
Sbjct: 490 AVLKLIELIEGVVQRSSKDYSSTVVLSGGSEGDRSNTLTGYVARAFLWKTSELTSVLQNF 549

Query: 265 INLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTLPDKASAR 140
+ CN L+ G D+ F+ E+ LDW++ F+L D + R
Sbjct: 550 VLGCNELLYGSTDVERFVLEINITLDWIISHCFSLQDVSDMR 591


>tr|A3AY25|A3AY25_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_015697 PE=4 SV=1
Length = 993

Score = 44.7 bits (104), Expect = 0.003
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Frame = -2

Query: 436 AVRKVLDIVESIGQT---DYNFPYAEWISAPSLENDGMPEFSSPWKQWRSSGLDACVESL 266
AV K+++++E + Q DY+ + ++ + + + W++S L + +++
Sbjct: 567 AVLKLIELIEGVVQRSSKDYSSTVVLSGGSEGDRSNTLTGYVARAFLWKTSELTSVLQNF 626

Query: 265 INLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTLPDKASAR 140
+ CN L+ G D+ F+ E+ LDW++ F+L D + R
Sbjct: 627 VLGCNELLYGSTDVERFVLEINITLDWIISHCFSLQDVSDMR 668


>tr|A8IRY2|A8IRY2_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_170684 PE=4 SV=1
Length = 387

Score = 35.0 bits (79), Expect = 2.2
Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Frame = -2

Query: 433 VRKVLDIVESIGQTDYNFPYAEWISAPSLENDGMPEFSSPWKQWRS-----SGLDACVES 269
+R+ D S G Y P++ W+S PS+ P + P W S S L+
Sbjct: 116 IRRDPDSSGSNGAPPYP-PWSAWLS-PSV-----PSWYWPGSSWTSPPQEPSLLERVAGG 168

Query: 268 LINLCNSLVQGKVDIIDFIAEVASALDWLVGLIFTL----------PDKASARIVNQRIG 119
L L L G +DIIDF+ EVA L + I T+ PD AS N G
Sbjct: 169 LSGLARDL--GLMDIIDFVQEVAPLLPEIASDIGTVAGYVDKLIQNPDAASLLDANGASG 226

Query: 118 QTCAEQVDNSDSEMISAESSPT 53
+ E + ++ M+S ++ T
Sbjct: 227 EALFETLRDTLLVMLSTDTGST 248


>tr|B3ED01|B3ED01_CHLL2 Putative uncharacterized protein
OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
GN=Clim_1366 PE=3 SV=1
Length = 481

Score = 34.7 bits (78), Expect = 2.9
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -2

Query: 175 LIFTLPDKASARIVNQRIGQTCAEQVDNSDSEMISAESSPTQLLCNASDG 26
LI T P AR++N R G+T A QV +++I S+P + N S G
Sbjct: 107 LICTFPLTVKARLINSRFGETLARQVKPMQTDLIITLSTPISIDHNWSLG 156