BP921158
Clone id YMU001_000146_D07
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGGCATGGTCCTCCCCCTTAGGAGAATCCTTTATAAGCGAGAATCTTTTTACAAGCACAA
GAACCAAAGAAAACCAATCCTCAGACTCAATGGTCGTTCCTTCCCGTAAGGGGAATCCGA
GAGACGAGCTCTCAATCCTTTTCCGTCTGTACTCGGAGTCGAGGCTCCGCAAACAATTTC
CGAATTCCGTTCCAAATAAGTATTCCCAAAACCTCTCGCAATAGTCATCTAATGTATCTC
TCTTATTCTCAAATGATGCCAAGCCGTGATGACATCTCTTTCATATTCGTCACATATCCA
AGTCAACGTGAAAATTTTCTTGAATTTTACCCACGTCGCAGGTGATTCTCTACGTAACAA
CTAAGTAAACCATGTCTGTGCAATTCCTTTCAAGTAGGATGTCGCCCTTCAGAGCTTGGA
GTGTTCCGTGAACCAACCTCCACAGAAGGCGACATCAAAATACTGTACTAACTCAAGGGC
TCAATTGGTGTCCTTGTAGCTTGAAAATGTCTCAAACGTAACGGCATGACCCCCTTCGTT
GAACTCCTTAATTTTCTTGCTCATTTGTT
■■Homology search results ■■ -
sp_hit_id Q07G42
Definition sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase rnf12 OS=Xenopus tropicalis
Align length 65
Score (bit) 32.7
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921158|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_D07.
(569 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase rnf12 OS=Xenop... 33 1.3
sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase rnf12-A OS=Xen... 32 1.7
sp|O13967|BGS2_SCHPO 1,3-beta-glucan synthase component bgs2 OS=... 31 4.9
sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase rnf12-B OS=Xen... 30 6.4
sp|Q5WWF9|MNMC_LEGPL tRNA 5-methylaminomethyl-2-thiouridine bios... 30 8.4
sp|Q496Z2|K0644_RAT Leucine-rich repeat-containing protein KIAA0... 30 8.4
sp|Q9DBY4|K0644_MOUSE Leucine-rich repeat-containing protein KIA... 30 8.4
sp|Q7L0X0|K0644_HUMAN Leucine-rich repeat-containing protein KIA... 30 8.4

>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase rnf12 OS=Xenopus
tropicalis GN=rnf12 PE=2 SV=1
Length = 639

Score = 32.7 bits (73), Expect = 1.3
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +1

Query: 121 ETSSQSFSVCTRSRGSANNFRIPFQISIPKTSRNSHLMYLSYSQMMPSRDDISFIFVTYP 300
+ +QS+ +R+ ++ +FR +I++ +TS N + L S MP +D+ V+
Sbjct: 122 QRGNQSWRAVSRTNPNSGDFRFSLEINVNRTSGNPSMPSLEQSSEMPGAEDME---VSSQ 178

Query: 301 SQREN 315
+ EN
Sbjct: 179 GENEN 183


>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase rnf12-A
OS=Xenopus laevis GN=rnf12-A PE=1 SV=1
Length = 622

Score = 32.3 bits (72), Expect = 1.7
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +1

Query: 121 ETSSQSFSVCTRSRGSANNFRIPFQISIPKTSRNSHLMYLSYSQMMPSRDDISFIFVTYP 300
+ +QS+ +R+ ++ +FR +I++ +TS N + L S MP +D+ V+
Sbjct: 122 QRGNQSWRAVSRTNPNSGDFRFSLEINVNRTSGNPSMPSLDQSAEMPGAEDME---VSSQ 178

Query: 301 SQRENFLEFYP 333
+ EN E P
Sbjct: 179 GEAENEPEPIP 189


>sp|O13967|BGS2_SCHPO 1,3-beta-glucan synthase component bgs2
OS=Schizosaccharomyces pombe GN=bgs2 PE=2 SV=2
Length = 1894

Score = 30.8 bits (68), Expect = 4.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3

Query: 561 SKKIKEFNEGGHAVTFETFSSYKDTN*ALELVQYFDVAFCG 439
S + EFN G T+ +S+ D+N ++ +Y+D ++ G
Sbjct: 27 SMDVTEFNNPGEESTYPQANSWNDSNKTKDIAEYYDYSWSG 67


>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase rnf12-B
OS=Xenopus laevis GN=rnf12-B PE=2 SV=1
Length = 757

Score = 30.4 bits (67), Expect = 6.4
Identities = 17/68 (25%), Positives = 35/68 (51%)
Frame = +1

Query: 121 ETSSQSFSVCTRSRGSANNFRIPFQISIPKTSRNSHLMYLSYSQMMPSRDDISFIFVTYP 300
+ +QS+ +R+ ++ +FR +I++ +TS + + L S MP +D+ V+
Sbjct: 122 QRGNQSWRAVSRTNPNSGDFRFSLEINVNRTSGTASMPSLDQSAEMPGPEDME---VSSQ 178

Query: 301 SQRENFLE 324
+ EN E
Sbjct: 179 GEAENVPE 186


>sp|Q5WWF9|MNMC_LEGPL tRNA 5-methylaminomethyl-2-thiouridine
biosynthesis bifunctional protein mnmC OS=Legionella
pneumophila (strain Lens) GN=mnmC PE=3 SV=1
Length = 666

Score = 30.0 bits (66), Expect = 8.4
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +1

Query: 88 QWSFLPVRGIRETSSQSFSVCTRSRGSANNFRIPFQISIPKTSRNSHLMYLSYSQMMPSR 267
+W LP S F++ G+ NF + +++ +N+ L Y+S + +
Sbjct: 52 RWQQLPTN-----ESNVFTIAETGFGTGMNFLLTWKLWEKFAPQNARLHYISCDKHPLKK 106

Query: 268 DDISFIFVTYPS---QRENFLEFYP 333
DD+ +P Q E +E YP
Sbjct: 107 DDLIKCLQKWPELSVQTEKLIEHYP 131


>sp|Q496Z2|K0644_RAT Leucine-rich repeat-containing protein KIAA0644
homolog OS=Rattus norvegicus PE=2 SV=1
Length = 811

Score = 30.0 bits (66), Expect = 8.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1

Query: 557 RKLRSSTKGVMPLRLRHFQATRTPIEPL 474
RKLR+ KG P+ +RH +TR P+ +
Sbjct: 724 RKLRARRKGGAPVHVRHMYSTRRPLRSM 751


>sp|Q9DBY4|K0644_MOUSE Leucine-rich repeat-containing protein
KIAA0644 OS=Mus musculus GN=KIAA0644 PE=2 SV=1
Length = 809

Score = 30.0 bits (66), Expect = 8.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1

Query: 557 RKLRSSTKGVMPLRLRHFQATRTPIEPL 474
RKLR+ KG P+ +RH +TR P+ +
Sbjct: 722 RKLRARRKGGAPVHVRHMYSTRRPLRSM 749


>sp|Q7L0X0|K0644_HUMAN Leucine-rich repeat-containing protein
KIAA0644 OS=Homo sapiens GN=KIAA0644 PE=2 SV=1
Length = 811

Score = 30.0 bits (66), Expect = 8.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1

Query: 557 RKLRSSTKGVMPLRLRHFQATRTPIEPL 474
RKLR+ KG P+ +RH +TR P+ +
Sbjct: 724 RKLRARRKGGAPVHVRHMYSTRRPLRSM 751


tr_hit_id Q6CHX6
Definition tr|Q6CHX6|Q6CHX6_YARLI YALI0A03751p OS=Yarrowia lipolytica
Align length 89
Score (bit) 38.5
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921158|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_D07.
(569 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6CHX6|Q6CHX6_YARLI YALI0A03751p OS=Yarrowia lipolytica GN=YA... 39 0.26
tr|Q7XSK7|Q7XSK7_ORYSJ Os04g0191000 protein OS=Oryza sativa subs... 36 1.7
tr|Q8SA93|Q8SA93_MAIZE Putative polyprotein OS=Zea mays GN=Z195D... 35 2.2
tr|B0CSB5|B0CSB5_LACBS Predicted protein OS=Laccaria bicolor (st... 35 2.9
tr|B6BNX9|B6BNX9_9PROT Chemotaxis response regulator protein-glu... 34 6.5

>tr|Q6CHX6|Q6CHX6_YARLI YALI0A03751p OS=Yarrowia lipolytica
GN=YALI0A03751g PE=4 SV=1
Length = 514

Score = 38.5 bits (88), Expect = 0.26
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = -3

Query: 510 TFSS-YKDTN*ALELVQYFDVAFCGGWFTEHSKL*RATSYLKGIAQTWFT*LLRRESPAT 334
TFS KDT L+ V+ + F G + + A LKG A++WF + +
Sbjct: 66 TFSGGEKDTQAILKWVRDMEEHFYGLFVQPELWVILAAVRLKGEARSWFAEVEKEHIFGD 125

Query: 333 WVKFKKIFTLTWICDEYERDVITAWHHLR 247
W +FK F W D Y VITA+H +R
Sbjct: 126 WNRFKTAFIEKWSPD-YFHKVITAYHGIR 153


>tr|Q7XSK7|Q7XSK7_ORYSJ Os04g0191000 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0059D20.8 PE=4 SV=2
Length = 1463

Score = 35.8 bits (81), Expect = 1.7
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -3

Query: 507 FSSYKDTN*ALELVQYFDVAFCGGWFTEHSKL*RATSYLKGIAQTWFT*LLRRESPATWV 328
F Y T L + F+ F ++ A+ +L + QTW+T LL E TW
Sbjct: 62 FPRYDGTTDPLLFLNKFEAYFRHHRTMAEERVGMASYHLDDVTQTWYTQLLEDEGTPTWG 121

Query: 327 KFKKIFTL 304
+FK++ L
Sbjct: 122 RFKELVNL 129


>tr|Q8SA93|Q8SA93_MAIZE Putative polyprotein OS=Zea mays
GN=Z195D10.9 PE=4 SV=1
Length = 2749

Score = 35.4 bits (80), Expect = 2.2
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3

Query: 405 ATSYLKGIAQTWFT*LLRRESPATWVKFKKIFTL 304
A+ +LKG AQTW+ L + E TW +FK++ TL
Sbjct: 509 ASYHLKGAAQTWYYALEQDEGMPTWGRFKEVCTL 542


>tr|B0CSB5|B0CSB5_LACBS Predicted protein OS=Laccaria bicolor
(strain S238N-H82) GN=LACBIDRAFT_305947 PE=4 SV=1
Length = 284

Score = 35.0 bits (79), Expect = 2.9
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3

Query: 30 FISENLFTSTRTKENQSSDSMVVPSRKGNPRDELSILFRL 149
F + L ++T +K ++SS+SM+ +KG RDE+ +FRL
Sbjct: 245 FCAPQLPSTTPSKPSRSSESMIRKKKKGRKRDEIDDIFRL 284


>tr|B6BNX9|B6BNX9_9PROT Chemotaxis response regulator
protein-glutamate methylesterase OS=Campylobacterales
bacterium GD 1 GN=CBGD1_62 PE=4 SV=1
Length = 195

Score = 33.9 bits (76), Expect = 6.5
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -3

Query: 249 RIREIH*MTIARGFGNTYLERNSEIV-CGASTPSTDGKGLRARLSDSPYGKERPLSLRIG 73
R++E H I+ NTYLE + V CGA+T S + G DSP P + I
Sbjct: 57 RLQENHLNPISVAQDNTYLENANVYVCCGATTVSKNSSGFIFSKKDSPVNAFNP-DINIL 115

Query: 72 FLWFLCL*KDSRL*RILLRG 13
F F+ K+ + ++L G
Sbjct: 116 FNSFVVFAKEVEILSVILTG 135