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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921160
Clone id YMU001_000146_D09
Library
Length 262
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATTGCATAGTTTGGTCTTCCGCAAAGTGAAGTCCTACTATGGTAAGATGTGCTTGACTT
AGGTGTTGTTCTTTTTCTTCAGGGTTAATGCATAAGAGAAATATCCCGTCTTGATTTCTT
TTGTATAGCCTTCCAGCTAGTAATTGATCCATAGCCAATTGCTCAATTAATCCGATTGTG
ATAAGAAGTGGTATTTGTGAATCCACTTGAGCTATTGACACAATGTTTTTCAACCATCTA
GGTATCATTTCCATGGAGAACA
■■Homology search results ■■ -
sp_hit_id A7MB10
Definition sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus
Align length 66
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921160|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_D09.
         (262 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD1...    30   3.7  
sp|Q5RFQ3|PWP2_PONAB Periodic tryptophan protein 2 homolog OS=Po...    30   5.0  
sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog OS=Ho...    30   5.0  

>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11
           PE=2 SV=1
          Length = 1874

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = -3

Query: 233 LKNIVSIAQVDSQIPLLITI-------GLIEQLAMDQLLAGRLYKRNQDGIFLLCINPEE 75
           L  +V  AQV    PL +T+       GL++ + +D   AG  +   Q    +LC++P  
Sbjct: 279 LPGLVVKAQVQKVTPLGLTLKFLSFFSGLVDFMHLDPKKAGTYFSNQQVRACVLCVHPRT 338

Query: 74  KEQHLS 57
           +   LS
Sbjct: 339 RAVRLS 344


>sp|Q5RFQ3|PWP2_PONAB Periodic tryptophan protein 2 homolog OS=Pongo
           abelii GN=PWP2 PE=2 SV=1
          Length = 918

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 73  FSSGLMHKRNIPS*FLLYSLPASN*SIANCSIN 171
           F+SG+ H   +P   L++SL  S+ SIA+ +IN
Sbjct: 304 FASGIFHLHELPEFNLIHSLSISDQSIASVAIN 336


>sp|Q15269|PWP2_HUMAN Periodic tryptophan protein 2 homolog OS=Homo
           sapiens GN=PWP2 PE=1 SV=2
          Length = 919

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 73  FSSGLMHKRNIPS*FLLYSLPASN*SIANCSIN 171
           F+SG+ H   +P   L++SL  S+ SIA+ +IN
Sbjct: 307 FASGIFHLHELPEFNLIHSLSISDQSIASVAIN 339
tr_hit_id A5AHD1
Definition tr|A5AHD1|A5AHD1_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 48
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921160|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_D09.
         (262 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AHD1|A5AHD1_VITVI Putative uncharacterized protein OS=Vitis...    39   0.17 
tr|A5BPJ6|A5BPJ6_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|Q2R0G5|Q2R0G5_ORYSJ Retrotransposon protein, putative, unclas...    37   0.38 
tr|Q2QTQ7|Q2QTQ7_ORYSJ Retrotransposon protein, putative, unclas...    36   0.84 
tr|Q2QSH2|Q2QSH2_ORYSJ Retrotransposon protein, putative, unclas...    36   0.84 
tr|A5BQS5|A5BQS5_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5C430|A5C430_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5AW20|A5AW20_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5AIU4|A5AIU4_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|Q9MAR5|Q9MAR5_ARATH F28H19.8 protein OS=Arabidopsis thaliana ...    35   1.9  
tr|A5BID0|A5BID0_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A5BHL3|A5BHL3_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A5BZ63|A5BZ63_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|A5B443|A5B443_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|Q7F9N8|Q7F9N8_ORYSJ OSJNBa0041M06.5 protein OS=Oryza sativa s...    34   3.2  
tr|A5BZP0|A5BZP0_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|A5BG55|A5BG55_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|A5AGD1|A5AGD1_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|Q2R4I0|Q2R4I0_ORYSJ Retrotransposon protein, putative, unclas...    34   4.2  
tr|B3GQB6|B3GQB6_9ROSI Putative uncharacterized protein (Fragmen...    34   4.2  
tr|A5C6U7|A5C6U7_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A5C427|A5C427_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A5BBH8|A5BBH8_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A5B076|A5B076_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A5AX09|A5AX09_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A5AIQ5|A5AIQ5_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|A5AHF8|A5AHF8_VITVI Putative uncharacterized protein OS=Vitis...    34   4.2  
tr|Q75H36|Q75H36_ORYSJ Putative polyprotein OS=Oryza sativa subs...    33   5.4  
tr|Q53NA3|Q53NA3_ORYSJ Retrotransposon protein, putative, unclas...    33   5.4  
tr|Q2QVH8|Q2QVH8_ORYSJ Retrotransposon protein, putative, unclas...    33   5.4  

>tr|A5AHD1|A5AHD1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010503 PE=4 SV=1
          Length = 576

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 167 IEQLAMDQLLAGR-LYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
           + QLA   ++ G  LY+R+ DG+FLLCI+ +   + +S+ H  + G H
Sbjct: 441 LRQLATKCVICGNALYRRSSDGMFLLCIDQDTTYRVMSEVHAGVCGPH 488


>tr|A5BPJ6|A5BPJ6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039104 PE=4 SV=1
          Length = 796

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -3

Query: 170 LIEQLAMDQLLAGR-LYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
           ++ QLA   ++ G  LY+R+ DG+ LLC++    +Q + + H  + GLH
Sbjct: 478 ILRQLATRFVICGESLYRRSPDGLLLLCLDRVSADQVIREVHAGVCGLH 526


>tr|Q2R0G5|Q2R0G5_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g42630 PE=4 SV=1
          Length = 2096

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 143  LLAGRLYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
            LL   LY R  DG+ L C+ PEE +  +S+ H  I G H
Sbjct: 1707 LLDDNLYYRTVDGVLLKCLGPEEAKTVMSEVHEGICGTH 1745


>tr|Q2QTQ7|Q2QTQ7_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g18840 PE=4 SV=1
          Length = 1226

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 143 LLAGRLYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
           LL G LY+RN DG+ L C++ ++ +  + + H  I G H
Sbjct: 872 LLDGDLYRRNIDGVLLKCLDKDQSKVVMGEVHEGICGTH 910


>tr|Q2QSH2|Q2QSH2_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g24120 PE=4 SV=1
          Length = 920

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 143 LLAGRLYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
           LL G LY+RN DG+ L C++ ++ +  + + H  I G H
Sbjct: 597 LLDGDLYRRNIDGVLLKCLDEDQSKVAMGKVHEGICGTH 635


>tr|A5BQS5|A5BQS5_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027695 PE=4 SV=1
          Length = 2204

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 167  IEQLAMDQLLAGR-LYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
            + QLA   ++ G+ LY+R+ DGI LLC++    ++ + + H  + G H
Sbjct: 1831 LRQLATRFVICGKTLYRRSLDGILLLCLDRASADRFMREVHARVCGPH 1878


>tr|A5C430|A5C430_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_016263 PE=4 SV=1
          Length = 2270

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 167  IEQLAMDQLLAGR-LYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
            + QLA   L+ G  LYKR+ DG+ LLC++    ++ + + H  + G H
Sbjct: 1397 LRQLAARFLICGETLYKRSPDGMLLLCLDRTSADRVMREVHAGVCGPH 1444


>tr|A5AW20|A5AW20_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_008545 PE=4 SV=1
          Length = 1811

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 167  IEQLAMDQLLAGR-LYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
            + QLA   ++ G  LYKR+ DG+ LLC++    +Q + + H  + G H
Sbjct: 1574 LRQLATRFVICGNTLYKRSPDGMLLLCLDRASVDQVMREVHAGVCGPH 1621


>tr|A5AIU4|A5AIU4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035810 PE=4 SV=1
          Length = 933

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 161 QLAMDQLLAGRLYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLH 27
           Q+A   L+ G LYKR+  G +L+C+N  E    L++ H  + G H
Sbjct: 598 QVARFTLIGGHLYKRSFTGPYLICLNHLEAMYVLAELHERVCGNH 642


>tr|Q9MAR5|Q9MAR5_ARATH F28H19.8 protein OS=Arabidopsis thaliana
           GN=F28H19.8 PE=4 SV=1
          Length = 640

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -3

Query: 128 LYKRNQDGIFLLCINPEEKEQHLSQAHLTIVGLHFAEDQTMQ 3
           LYK+  DG+F  CI  EE +  L   H +  G HFA  +T+Q
Sbjct: 471 LYKKGVDGLFRRCIAEEEVQGVLELCHNSPYGGHFATFKTVQ 512