| BP921162 |
| Clone id |
YMU001_000146_D12 |
| Library |
YMU01 |
| Length |
510 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000146_D12. |
| Accession |
BP921162 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
CGCAGGATAAATGGAGTCCCCAATAGGTAGTGCTTCCATGTGTCTAGGGCATGTAGAACA
GCTAAAAGCTCTTTCTCATAAATGCCCAAGACTCGTTCATCAATATTGAGCCTTCGGCTC
TCATATGCTATGGCATGCCCTTCTTGAAGCAAAACTGCTCCAAGGCAATCACCACAAGCA
TCACATTGGACCTCAAATGGCTTTGAGAGATCCGGAAGCACGAGGACTGGTTGGGAAGTA
AGTTTCTCTTTGAGCTTTTCAAAAGCATTTTTCTCCTTAGCAGTCCATACAAACTTAACG
TTCTTCTTAGTTAAGTCGTGTAGTGGTCCTGCTACTTGAGAGAATTTTGCTATGAAGCGT
CTATAGTATGCGCACATACCAACAAAGCTTCTTAGCTCATGTAGATTTCTTGGGTTAGGC
CATGCTTTTATTACCTCTAACTTTGATGGATCCATTTGGATACCATCTTTAGAGATAATA
TGACCTAGGTATTGAATCTCTTGAAGGAAG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P04323 |
| Definition |
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster |
| Align length |
166 |
| Score (bit) |
141.0 |
| E-value |
2.0e-33 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921162|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_D12.
(510 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from tra... 141 2e-33
sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from tra... 134 3e-31
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra... 122 7e-28
sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from tra... 114 3e-25
sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa prot... 108 1e-23
sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa prot... 108 1e-23
sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa prot... 108 1e-23
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from tra... 107 4e-23
sp|P92523|M860_ARATH Uncharacterized mitochondrial protein AtMg0... 101 2e-21
sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogen... 95 2e-19
sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (... 93 8e-19
sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus ... 89 2e-17
sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pr... 86 8e-17
sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia... 84 4e-16
sp|P26808|POL_MLVFP Pol polyprotein OS=Friend murine leukemia vi... 84 4e-16
sp|P26809|POL_MLVFF Pol polyprotein OS=Friend murine leukemia vi... 84 4e-16
sp|P03355|POL_MLVMO Pol polyprotein OS=Moloney murine leukemia v... 84 5e-16
sp|P03356|POL_MLVAV Pol polyprotein OS=AKV murine leukemia virus... 84 5e-16
sp|P26810|POL_MLVF5 Pol polyprotein OS=Friend murine leukemia vi... 82 1e-15
sp|Q7LHG5|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein OS=Sa... 80 4e-15
sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein OS=Sa... 80 4e-15
sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapi... 80 7e-15
sp|Q7M732|RTL1_MOUSE Retrotransposon-like protein 1 OS=Mus muscu... 70 4e-12
sp|Q52QI2|RTL1_BOVIN Retrotransposon-like protein 1 OS=Bos tauru... 66 1e-10
sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic ... 60 8e-09
sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic ... 60 8e-09
sp|Q9P2P1|K1305_HUMAN Integrase catalytic domain-containing prot... 59 1e-08
sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched rin... 59 2e-08
sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic ... 59 2e-08
sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic ... 58 2e-08
>sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from
transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1058
Score = 141 bits (355), Expect = 2e-33
Identities = 72/166 (43%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Frame = -2
Query: 503 QEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGP 324
QE +LGH+++ DGI+ +P K+E I+ +P P E+++F+G+ YYR+FI F+ +A P
Sbjct: 406 QETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKP 465
Query: 323 LHDLTKKNVKFVWTAKE-KNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLL 147
+ KKN+K T E +AF+KLK ++ P+L +PD +K F + DA LGAVL
Sbjct: 466 MTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLS 525
Query: 146 QEGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGTPF 9
Q+GH ++Y SR LN E EKELLA++ A T++HYLLG F
Sbjct: 526 QDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHF 571
>sp|P20825|POL2_DROME Retrovirus-related Pol polyprotein from
transposon 297 OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1059
Score = 134 bits (336), Expect = 3e-31
Identities = 71/168 (42%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Frame = -2
Query: 503 QEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGP 324
+E +LGHI++ DGI+ +P K++ I ++P P E+R+F+G+ YYR+FI ++ +A P
Sbjct: 405 KEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKP 464
Query: 323 LHDLTKKNVKFVWTAKEK-NAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLL 147
+ KK K E AFEKLK + P+L LPD K F + DA LGAVL
Sbjct: 465 MTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLS 524
Query: 146 QEGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGTPFIL 3
Q GH I++ SR LN E EKELLA++ A T++HYLLG F++
Sbjct: 525 QNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572
>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1035
Score = 122 bits (307), Expect = 7e-28
Identities = 65/177 (36%), Positives = 106/177 (59%), Gaps = 12/177 (6%)
Frame = -2
Query: 509 FLQEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVA 330
F + ++YLG I+SKDG + DP K++ I+ +P P ++++RSF+G+ +YYR FI F+ +A
Sbjct: 379 FKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIA 438
Query: 329 GPLHDLTK-----------KNVKFVWTAKEKNAFEKLKEKLTSQPVLV-LPDLSKPFEVQ 186
P+ D+ K K + + ++NAF++L+ L S+ V++ PD KPF++
Sbjct: 439 RPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLT 498
Query: 185 CDACGDCLGAVLLQEGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGT 15
DA +GAVL QEG I SR L E+ E+ELLA++ AL +++L G+
Sbjct: 499 TDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGS 555
>sp|Q8I7P9|POL5_DROME Retrovirus-related Pol polyprotein from
transposon opus OS=Drosophila melanogaster GN=pol PE=4
SV=1
Length = 1003
Score = 114 bits (284), Expect = 3e-25
Identities = 66/176 (37%), Positives = 100/176 (56%), Gaps = 15/176 (8%)
Frame = -2
Query: 500 EIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPL 321
++++LG+I++ DGI+ DP K+ I P P ++ EL+ F+GM +YYR+FI +++VA PL
Sbjct: 323 QVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPL 382
Query: 320 HDLTK---KNVKFVWTAK--------EKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDAC 174
+LT+ N+K ++K +F LK L S +L P +KPF + DA
Sbjct: 383 TNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDAS 442
Query: 173 GDCLGAVLLQEGHA----IAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLG 18
+GAVL Q+ IAY SR LN E EKE+LA++ +LD + YL G
Sbjct: 443 NWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYG 498
>sp|Q9UR07|RTF23_SCHPO Retrotransposable element Tf2 155 kDa protein
type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1
Length = 1333
Score = 108 bits (271), Expect = 1e-23
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 5/167 (2%)
Frame = -2
Query: 500 EIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPL 321
+++++G+ IS+ G ++ + W P+N ELR F+G Y R+FI K SQ+ PL
Sbjct: 607 QVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPL 666
Query: 320 HDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQE 141
++L KK+V++ WT + A E +K+ L S PVL D SK ++ DA +GAVL Q+
Sbjct: 667 NNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
Query: 140 G-----HAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGT 15
+ + Y S +++ + + +KE+LA++ +L W+HYL T
Sbjct: 727 HDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773
>sp|Q9C0R2|RTF22_SCHPO Retrotransposable element Tf2 155 kDa protein
type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1
Length = 1333
Score = 108 bits (271), Expect = 1e-23
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 5/167 (2%)
Frame = -2
Query: 500 EIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPL 321
+++++G+ IS+ G ++ + W P+N ELR F+G Y R+FI K SQ+ PL
Sbjct: 607 QVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPL 666
Query: 320 HDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQE 141
++L KK+V++ WT + A E +K+ L S PVL D SK ++ DA +GAVL Q+
Sbjct: 667 NNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
Query: 140 G-----HAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGT 15
+ + Y S +++ + + +KE+LA++ +L W+HYL T
Sbjct: 727 HDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773
>sp|Q05654|RTF21_SCHPO Retrotransposable element Tf2 155 kDa protein
type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1
Length = 1333
Score = 108 bits (271), Expect = 1e-23
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 5/167 (2%)
Frame = -2
Query: 500 EIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPL 321
+++++G+ IS+ G ++ + W P+N ELR F+G Y R+FI K SQ+ PL
Sbjct: 607 QVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPL 666
Query: 320 HDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQE 141
++L KK+V++ WT + A E +K+ L S PVL D SK ++ DA +GAVL Q+
Sbjct: 667 NNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
Query: 140 G-----HAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGT 15
+ + Y S +++ + + +KE+LA++ +L W+HYL T
Sbjct: 727 HDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773
>sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from
transposon 412 OS=Drosophila melanogaster GN=POL PE=4
SV=1
Length = 1237
Score = 107 bits (266), Expect = 4e-23
Identities = 65/171 (38%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = -2
Query: 509 FLQEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVA 330
F+ E+ +LGH + GI D K +VI+ +P P + R FV C YYRRFI F+ +
Sbjct: 512 FMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYS 571
Query: 329 GPLHDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVL 150
+ L KKNV F WT + + AF LK +L + +L PD SK F + DA GAVL
Sbjct: 572 RHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVL 631
Query: 149 LQ--EGH--AIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGTPF 9
Q GH +AY SR E E+EL A+ A+ ++ Y+ G F
Sbjct: 632 TQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHF 682
>sp|P92523|M860_ARATH Uncharacterized mitochondrial protein
AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
Length = 158
Score = 101 bits (252), Expect = 2e-21
Identities = 50/104 (48%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Frame = -2
Query: 500 EIQYLGH--IISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAG 327
+I YLGH IIS +G+ DP+KLE + WP P+N ELR F+G+ YYRRF+ + ++
Sbjct: 29 QIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVR 88
Query: 326 PLHDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPF 195
PL +L KKN WT AF+ LK +T+ PVL LPDL PF
Sbjct: 89 PLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131
>sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogenous
virus ECE1 GN=pol PE=3 SV=1
Length = 1046
Score = 95.1 bits (235), Expect = 2e-19
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 4/136 (2%)
Frame = -2
Query: 500 EIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPL 321
++ YLG+I+S+ + P ++E + P P+N E+R F+G + R +I F+++A PL
Sbjct: 240 KVTYLGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPL 299
Query: 320 HDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQE 141
+ LTK++ F W K ++AFE LKE L S P L LPD SKPF + D VL Q+
Sbjct: 300 YALTKESAPFTWQEKHQSAFEALKEALLSAPALGLPDTSKPFTLFIDEKQGIAKGVLTQK 359
Query: 140 ----GHAIAYESRRLN 105
+AY S++L+
Sbjct: 360 LGPWKRPVAYLSKKLD 375
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q9LHM4 |
| Definition |
tr|Q9LHM4|Q9LHM4_ARATH Retroelement pol polyprotein (Gypsy/Ty-3 retroelement polyprotein; 69905-74404) OS=Arabidopsis thaliana |
| Align length |
166 |
| Score (bit) |
179.0 |
| E-value |
7.0e-44 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921162|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_D12.
(510 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q9LHM4|Q9LHM4_ARATH Retroelement pol polyprotein (Gypsy/Ty-3 ... 179 7e-44
tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4 ... 178 2e-43
tr|Q2QSH9|Q2QSH9_ORYSJ Retrotransposon protein, putative, unclas... 178 2e-43
tr|A5JSC4|A5JSC4_MAIZE Polyprotein OS=Zea mays PE=4 SV=1 176 4e-43
tr|Q0DBF1|Q0DBF1_ORYSJ Os06g0570000 protein OS=Oryza sativa subs... 176 6e-43
tr|Q9SLQ0|Q9SLQ0_ORYSI Gag-pol polyprotein (Fragment) OS=Oryza s... 176 8e-43
tr|Q8S6V9|Q8S6V9_ORYSA Putative retroelement OS=Oryza sativa GN=... 176 8e-43
tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon pro... 176 8e-43
tr|Q7G6H1|Q7G6H1_ORYSJ Putative retroelement (Retrotransposon pr... 176 8e-43
tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gy... 176 8e-43
tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gy... 175 1e-42
tr|Q2QR60|Q2QR60_ORYSJ Retrotransposon protein, putative, Ty3-gy... 175 1e-42
tr|Q7XX57|Q7XX57_ORYSJ OSJNBb0049I21.6 protein OS=Oryza sativa s... 175 1e-42
tr|Q7XX43|Q7XX43_ORYSJ OSJNBa0059D20.6 protein OS=Oryza sativa s... 175 1e-42
tr|Q7XRV6|Q7XRV6_ORYSJ OSJNBb0049I21.5 protein OS=Oryza sativa s... 175 1e-42
tr|Q0D6S9|Q0D6S9_ORYSJ Os07g0444200 protein OS=Oryza sativa subs... 175 1e-42
tr|Q7XEF2|Q7XEF2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 174 2e-42
tr|Q93WG4|Q93WG4_ORYSA Putative retroelement OS=Oryza sativa GN=... 174 2e-42
tr|Q7XFI5|Q7XFI5_ORYSJ Retrotransposon protein, putative, Ty3-gy... 174 2e-42
tr|Q2QSS9|Q2QSS9_ORYSJ Retrotransposon protein, putative, Ty3-gy... 174 3e-42
tr|Q10IG2|Q10IG2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 174 3e-42
tr|Q7XWN9|Q7XWN9_ORYSJ OSJNBa0032B23.3 protein OS=Oryza sativa s... 173 4e-42
tr|Q2QZW2|Q2QZW2_ORYSJ Retrotransposon protein, putative, Ty3-gy... 173 4e-42
tr|Q7XWZ0|Q7XWZ0_ORYSJ OSJNBb0072N21.12 protein OS=Oryza sativa ... 173 5e-42
tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s... 173 5e-42
tr|Q5JQX2|Q5JQX2_ORYSA OSJNBb0015D13.7 protein OS=Oryza sativa G... 173 5e-42
tr|Q0E1H7|Q0E1H7_ORYSJ Os02g0442200 protein OS=Oryza sativa subs... 173 5e-42
tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G... 173 5e-42
tr|Q7X798|Q7X798_ORYSJ OSJNBb0108J11.19 protein (OSJNBa0028I23.1... 172 6e-42
tr|Q6F2Q6|Q6F2Q6_ORYSJ Putative polyprotein OS=Oryza sativa subs... 172 6e-42
>tr|Q9LHM4|Q9LHM4_ARATH Retroelement pol polyprotein (Gypsy/Ty-3
retroelement polyprotein; 69905-74404) OS=Arabidopsis
thaliana GN=T21B14.24 PE=4 SV=1
Length = 1499
Score = 179 bits (454), Expect = 7e-44
Identities = 87/166 (52%), Positives = 113/166 (68%)
Frame = -2
Query: 500 EIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPL 321
+++YLGH IS GI+ DP+K++ +K WP P L +LR F+G+ YYRRF+ F +AGPL
Sbjct: 796 KVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPL 855
Query: 320 HDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQE 141
H LTK + F WTA + AFE LK L PVL LP K F V+ DACG +GAVL+QE
Sbjct: 856 HALTKTDA-FEWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQE 914
Query: 140 GHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGTPFIL 3
GH +AY SR+L + L IYEKELLAV+ A+ W+HYLL + FI+
Sbjct: 915 GHPLAYISRQLKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFII 960
>tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4 SV=1
Length = 1542
Score = 178 bits (451), Expect = 2e-43
Identities = 81/167 (48%), Positives = 120/167 (71%)
Frame = -2
Query: 503 QEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGP 324
QEI++LGH++SK+ ++MDP K++ I W PR++ +LRSF+G+ YYR+FIA +S+ A
Sbjct: 806 QEIKFLGHLVSKNQVRMDPKKVQAIVDWQAPRHVKDLRSFLGLANYYRKFIAGYSKKAAS 865
Query: 323 LHDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQ 144
L DL KK+ K+VW+ + + AF+ LK + S+P+L LPD PFEV DA +G VL+Q
Sbjct: 866 LTDLLKKDAKWVWSEQCEKAFQNLKNAIASEPILKLPDFELPFEVHTDASDKAIGGVLVQ 925
Query: 143 EGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGTPFIL 3
EGH +A+ESR+LN E+ +EKE++AV+H L W+ YLLGT F++
Sbjct: 926 EGHPVAFESRKLNDAEQRYSTHEKEMVAVVHCLQVWRVYLLGTRFVV 972
>tr|Q2QSH9|Q2QSH9_ORYSJ Retrotransposon protein, putative,
unclassified, expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os12g24050 PE=4 SV=1
Length = 1548
Score = 178 bits (451), Expect = 2e-43
Identities = 83/166 (50%), Positives = 115/166 (69%)
Frame = -2
Query: 500 EIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPL 321
+++YLGHIIS G+ D K +V+ WP P NL ELR F+G+ YYR+F+ + +A PL
Sbjct: 817 QLEYLGHIISAAGVATDAEKTKVMLQWPVPTNLTELRGFLGLTGYYRKFVKNYGILAKPL 876
Query: 320 HDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQE 141
L KKNVKFVWT + AF+ LK ++S PVLVLP+ +KPF ++ DAC +GAVL QE
Sbjct: 877 TVLLKKNVKFVWTEHTQKAFDSLKLAMSSTPVLVLPNFAKPFTIETDACSTGIGAVLSQE 936
Query: 140 GHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGTPFIL 3
GH +A+ S+ L I+ + L IYEKE LA++ A+D W+ YLL PF++
Sbjct: 937 GHPVAFYSKALGINNQKLSIYEKEFLAIMMAIDKWRPYLLRGPFVI 982
>tr|A5JSC4|A5JSC4_MAIZE Polyprotein OS=Zea mays PE=4 SV=1
Length = 1476
Score = 176 bits (447), Expect = 4e-43
Identities = 83/165 (50%), Positives = 116/165 (70%)
Frame = -2
Query: 509 FLQEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVA 330
+L+EI++LGH IS+DGI +DP K++ + W P + ++RSF+G+ YYRRFI FS++A
Sbjct: 735 WLKEIKFLGHTISQDGIAVDPDKVQEVMNWRPPTTVRQIRSFLGLAGYYRRFIPDFSRIA 794
Query: 329 GPLHDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVL 150
P+ +L KK VKFVW+ K ++AF L++ LT+ PVL PD SKPF+V CDA G LG VL
Sbjct: 795 KPITELLKKEVKFVWSQKCEDAFHALRQHLTTAPVLAQPDSSKPFDVYCDASGTGLGCVL 854
Query: 149 LQEGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGT 15
+Q+ IAY SR L E+ ++ EL AV+HAL W+HYL+GT
Sbjct: 855 MQDNRVIAYASRALRPHEQNYPTHDLELAAVVHALKMWRHYLMGT 899
>tr|Q0DBF1|Q0DBF1_ORYSJ Os06g0570000 protein OS=Oryza sativa subsp.
japonica GN=Os06g0570000 PE=4 SV=1
Length = 1186
Score = 176 bits (446), Expect = 6e-43
Identities = 81/166 (48%), Positives = 114/166 (68%)
Frame = -2
Query: 500 EIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPL 321
+++YLGHIIS +G+ DP K V++ WP P N+ ELR F+G+ YYR+F+ + +A PL
Sbjct: 546 KLEYLGHIISAEGVATDPEKTRVMQDWPLPSNVTELRGFLGLTGYYRKFVKHYGILAKPL 605
Query: 320 HDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQE 141
L +KN KFVWT + ++AF LKE + S PVL LPD +KPF ++ DAC +G VL QE
Sbjct: 606 TMLLQKNAKFVWTPQAQSAFVALKEAMCSTPVLALPDFAKPFVIETDACATGIGVVLSQE 665
Query: 140 GHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGTPFIL 3
GH +A+ S+ L I + L IYEKE LA++ A+D W+ YLL PF++
Sbjct: 666 GHPVAFYSKALGIVNQRLSIYEKEFLAIMMAVDRWRSYLLRGPFVI 711
>tr|Q9SLQ0|Q9SLQ0_ORYSI Gag-pol polyprotein (Fragment) OS=Oryza sativa
subsp. indica GN=gag-pol PE=4 SV=1
Length = 1587
Score = 176 bits (445), Expect = 8e-43
Identities = 77/165 (46%), Positives = 116/165 (70%)
Frame = -2
Query: 497 IQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVAGPLH 318
+ +LG++++ GI++D +K+E I +WP P + ++RSF+G+ +YRRF+ FS +A PLH
Sbjct: 942 VSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLH 1001
Query: 317 DLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVLLQEG 138
+LTK+NV F W A ++NAF+ LK+KLT P+L LPD +K FE++CDA G LG VLLQEG
Sbjct: 1002 ELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEG 1061
Query: 137 HAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLGTPFIL 3
+AY S +L+ Y+KEL A++ L+TW+HYL F++
Sbjct: 1062 KPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVI 1106
>tr|Q8S6V9|Q8S6V9_ORYSA Putative retroelement OS=Oryza sativa
GN=OSJNBa0082N11.33 PE=4 SV=1
Length = 986
Score = 176 bits (445), Expect = 8e-43
Identities = 82/164 (50%), Positives = 116/164 (70%)
Frame = -2
Query: 509 FLQEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVA 330
+L+E+ +LGHIIS G+ +DP+K+E I W P+++ E+RSF+G+ YYRRFI FS++A
Sbjct: 250 WLKEVAFLGHIISAGGVVVDPAKVEAITEWKAPKSVTEIRSFLGLAGYYRRFIEGFSKIA 309
Query: 329 GPLHDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVL 150
P+ L KK KFVW+ + + +FE+LKEKLTS P+LVLPD+ K F + CDA LG VL
Sbjct: 310 RPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVL 369
Query: 149 LQEGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLG 18
+Q+G +AY SR+L E ++ EL AV+HAL W+HYL+G
Sbjct: 370 MQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHYLIG 413
>tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon protein,
putative, Ty3-gypsy subclass) OS=Oryza sativa subsp.
japonica GN=OSJNBa0034B05.13 PE=4 SV=1
Length = 1569
Score = 176 bits (445), Expect = 8e-43
Identities = 81/164 (49%), Positives = 115/164 (70%)
Frame = -2
Query: 509 FLQEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVA 330
+L+E+ +LGH+IS G+ MDP+K+E + W P+ + E+RSF+G+ YYRRFI FS++A
Sbjct: 833 WLKEVAFLGHVISAGGVAMDPAKVEAVTEWKAPKFVTEIRSFIGLAGYYRRFIEGFSKIA 892
Query: 329 GPLHDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVL 150
P+ L KK KFVW + + +FE+LKEKLTS P+LVLPD+ K F + CDA LG VL
Sbjct: 893 RPMTQLLKKEKKFVWLEQCQESFEQLKEKLTSSPILVLPDIWKDFVIYCDASRQGLGGVL 952
Query: 149 LQEGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLG 18
+Q+G +AY SR+L E ++ EL AV+HAL+ W+HYL+G
Sbjct: 953 MQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALNIWRHYLIG 996
>tr|Q7G6H1|Q7G6H1_ORYSJ Putative retroelement (Retrotransposon
protein, putative, Ty3-gypsy subclass) OS=Oryza sativa
subsp. japonica GN=OSJNAa0082N11.6 PE=4 SV=1
Length = 986
Score = 176 bits (445), Expect = 8e-43
Identities = 82/164 (50%), Positives = 116/164 (70%)
Frame = -2
Query: 509 FLQEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVA 330
+L+E+ +LGHIIS G+ +DP+K+E I W P+++ E+RSF+G+ YYRRFI FS++A
Sbjct: 250 WLKEVAFLGHIISAGGVVVDPAKVEAITEWKAPKSVTEIRSFLGLAGYYRRFIEGFSKIA 309
Query: 329 GPLHDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVL 150
P+ L KK KFVW+ + + +FE+LKEKLTS P+LVLPD+ K F + CDA LG VL
Sbjct: 310 RPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVL 369
Query: 149 LQEGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLG 18
+Q+G +AY SR+L E ++ EL AV+HAL W+HYL+G
Sbjct: 370 MQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALKIWRHYLIG 413
>tr|Q2RB45|Q2RB45_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g03250 PE=4 SV=1
Length = 1284
Score = 176 bits (445), Expect = 8e-43
Identities = 80/164 (48%), Positives = 117/164 (71%)
Frame = -2
Query: 509 FLQEIQYLGHIISKDGIQMDPSKLEVIKAWPNPRNLHELRSFVGMCAYYRRFIAKFSQVA 330
+L+E+ +LGH+IS G+ +DP+K+E + W P+++ E+RSF+G+ YYRRFI FS++A
Sbjct: 734 WLKEVAFLGHVISAGGVAVDPAKVEAVMEWKAPKSVTEIRSFLGLVGYYRRFIEGFSKIA 793
Query: 329 GPLHDLTKKNVKFVWTAKEKNAFEKLKEKLTSQPVLVLPDLSKPFEVQCDACGDCLGAVL 150
P+ L KK KFVW+ + + +FE+LKEKLTS P+LVLPD+ K F + CDA LG VL
Sbjct: 794 RPMTQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVL 853
Query: 149 LQEGHAIAYESRRLNIDERVLGIYEKELLAVLHALDTWKHYLLG 18
+Q+G +AY SR+L E ++ EL AV+HAL+ W+HYL+G
Sbjct: 854 MQDGKVVAYASRQLRPHEENYPTHDLELAAVVHALNIWRHYLIG 897
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