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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921171
Clone id YMU001_000146_E09
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATTCGCGGCCCAAGTTCATATGTTTTTACGAGAGCTCTAAAGTATAAGTTACAAGAGCT
CTACTCGAGATTCAAAAAGTTTTGCTATGTATACAAAATTCAAAAAGCCACCTCAATGTG
CCTCTTTCCTTGCCATCAAAGCAACTTTACCTTCTTCTATAGCTCTCCAACATTCACGGA
TCAACACTGCACTGAACCACTGAATGTTCATTTTGACAAGCTTCCATTCGTGATCCAAAT
CGCTTATGTCTTGATAAAGTTCAAGCACTTCATGTCTTCATTTACATTGGTCAAGTCCAC
CATGTAAGGAAAACAAGGATTCTGAACCAAAGGTATCTTTGTATCAGCTGTTGAATGGCC
AGCTTTACGGACTCGTTACCGCTTTTAATCTTGACACCAGTGCTCTTGACACCATTGTTG
TTGCTTCTTCTGTCGATGCTCCTTCTTAACCTCCACCTTGAACCATGCAATCAAATTTTC
AACAAAGTGCACATGCTCATTCCGCTCGATCCGAGCACGAAAAAAAAGAATCCCAAAGAG
TCAAGAGTACCTGCAGGTAATATCT
■■Homology search results ■■ -
sp_hit_id Q97ZZ8
Definition sp|Q97ZZ8|RGYR1_SULSO Reverse gyrase 1 OS=Sulfolobus solfataricus
Align length 57
Score (bit) 30.0
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921171|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_E09.
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q97ZZ8|RGYR1_SULSO Reverse gyrase 1 OS=Sulfolobus solfataricu...    30   8.3  
sp|P13901|POLG_HAVMB Genome polyprotein OS=Human hepatitis A vir...    30   8.3  
sp|P06441|POLG_HAVLA Genome polyprotein OS=Human hepatitis A vir...    30   8.3  
sp|P08617|POLG_HAVHM Genome polyprotein OS=Human hepatitis A vir...    30   8.3  
sp|Q05794|POLG_HAVHA Genome polyprotein (Fragments) OS=Human hep...    30   8.3  
sp|Q67825|POLG_HAVGB Genome polyprotein OS=Human hepatitis A vir...    30   8.3  
sp|P06442|POLG_HAVCR Genome polyprotein (Fragment) OS=Human hepa...    30   8.3  

>sp|Q97ZZ8|RGYR1_SULSO Reverse gyrase 1 OS=Sulfolobus solfataricus
           GN=rgy1 PE=3 SV=1
          Length = 1242

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +2

Query: 47  KLQELYSRFKKFCYVYKIQKATSMCLFPCHQSNFTFFYSSPTFTDQHCTEPLNVHFD 217
           K  ELYS   +  Y  +    T   L      NF  F S+  F  Q+ +E  N+ FD
Sbjct: 153 KFSELYSYSPRILYNKQSPTQTENILDQLKSGNFDIFISTNRFVIQNLSELSNIKFD 209


>sp|P13901|POLG_HAVMB Genome polyprotein OS=Human hepatitis A virus
           genotype IB (isolate MBB) PE=1 SV=1
          Length = 2227

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
 Frame = -2

Query: 540 LFGILFFRARIERNE-HVHFVENLIAWFKVEVKKEHRQKKQQQWCQEHWCQD*KR*RVRK 364
           L G+     ++ RNE  V   EN++     E   + R K      QE W  D  +    K
Sbjct: 236 LHGLTPLSTQMMRNEFRVSTTENVVNLSNYE---DARAKMSFALDQEDWKSDPSQGGGIK 292

Query: 363 AGHSTADTKIPLVQN-----------------PCFPYMVDLTNVNEDMKCL 262
             H T  T IP +                   P  PY   +TN N D KC+
Sbjct: 293 ITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPDQKCI 343


>sp|P06441|POLG_HAVLA Genome polyprotein OS=Human hepatitis A virus
           genotype IA (isolate LA) PE=1 SV=1
          Length = 2227

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
 Frame = -2

Query: 540 LFGILFFRARIERNE-HVHFVENLIAWFKVEVKKEHRQKKQQQWCQEHWCQD*KR*RVRK 364
           L G+     ++ RNE  V   EN++     E   + R K      QE W  D  +    K
Sbjct: 236 LHGLTPLSTQMMRNEFRVSTTENVVNLSNYE---DARAKMSFALDQEDWKSDPSQGGGIK 292

Query: 363 AGHSTADTKIPLVQN-----------------PCFPYMVDLTNVNEDMKCL 262
             H T  T IP +                   P  PY   +TN N D KC+
Sbjct: 293 ITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPDQKCI 343


>sp|P08617|POLG_HAVHM Genome polyprotein OS=Human hepatitis A virus
           genotype IB (isolate HM175) PE=1 SV=1
          Length = 2227

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
 Frame = -2

Query: 540 LFGILFFRARIERNE-HVHFVENLIAWFKVEVKKEHRQKKQQQWCQEHWCQD*KR*RVRK 364
           L G+     ++ RNE  V   EN++     E   + R K      QE W  D  +    K
Sbjct: 236 LHGLTPLSTQMMRNEFRVSTTENVVNLSNYE---DARAKMSFALDQEDWKSDPSQGGGIK 292

Query: 363 AGHSTADTKIPLVQN-----------------PCFPYMVDLTNVNEDMKCL 262
             H T  T IP +                   P  PY   +TN N D KC+
Sbjct: 293 ITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPDQKCI 343


>sp|Q05794|POLG_HAVHA Genome polyprotein (Fragments) OS=Human
           hepatitis A virus genotype IA (isolate HAS-15) PE=3 SV=2
          Length = 2052

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
 Frame = -2

Query: 540 LFGILFFRARIERNE-HVHFVENLIAWFKVEVKKEHRQKKQQQWCQEHWCQD*KR*RVRK 364
           L G+     ++ RNE  V   EN++     E   + R K      QE W  D  +    K
Sbjct: 236 LHGLTPLSTQMMRNEFRVSTTENVVNLSNYE---DARAKMSFALDQEDWKSDPSQGGGIK 292

Query: 363 AGHSTADTKIPLVQN-----------------PCFPYMVDLTNVNEDMKCL 262
             H T  T IP +                   P  PY   +TN N D KC+
Sbjct: 293 ITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPDQKCI 343


>sp|Q67825|POLG_HAVGB Genome polyprotein OS=Human hepatitis A virus
           genotype IA (isolate GBM) PE=3 SV=1
          Length = 2227

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
 Frame = -2

Query: 540 LFGILFFRARIERNE-HVHFVENLIAWFKVEVKKEHRQKKQQQWCQEHWCQD*KR*RVRK 364
           L G+     ++ RNE  V   EN++     E   + R K      QE W  D  +    K
Sbjct: 236 LHGLTPLSTQMMRNEFRVSTTENVVNLSNYE---DARAKMSFALDQEDWKSDPSQGGGIK 292

Query: 363 AGHSTADTKIPLVQN-----------------PCFPYMVDLTNVNEDMKCL 262
             H T  T IP +                   P  PY   +TN N D KC+
Sbjct: 293 ITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPDQKCI 343


>sp|P06442|POLG_HAVCR Genome polyprotein (Fragment) OS=Human
           hepatitis A virus genotype IA (isolate CR326) PE=3 SV=1
          Length = 852

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
 Frame = -2

Query: 540 LFGILFFRARIERNE-HVHFVENLIAWFKVEVKKEHRQKKQQQWCQEHWCQD*KR*RVRK 364
           L G+     ++ RNE  V   EN++     E   + R K      QE W  D  +    K
Sbjct: 236 LHGLTPLSTQMMRNEFRVSTTENVVNLSNYE---DARAKMSFALDQEDWKSDPSQGGGIK 292

Query: 363 AGHSTADTKIPLVQN-----------------PCFPYMVDLTNVNEDMKCL 262
             H T  T IP +                   P  PY   +TN N D KC+
Sbjct: 293 ITHFTTWTSIPTLAAQFPFNASDSVGQQIKVIPVDPYFFQMTNTNPDQKCI 343
tr_hit_id A8QDS6
Definition tr|A8QDS6|A8QDS6_BRUMA Peptidase C13 family protein OS=Brugia malayi
Align length 84
Score (bit) 34.3
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921171|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_E09.
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8QDS6|A8QDS6_BRUMA Peptidase C13 family protein OS=Brugia ma...    34   4.9  
tr|A0EFA4|A0EFA4_PARTE Chromosome undetermined scaffold_93, whol...    33   8.3  

>tr|A8QDS6|A8QDS6_BRUMA Peptidase C13 family protein OS=Brugia
           malayi GN=Bm1_50230 PE=4 SV=1
          Length = 442

 Score = 34.3 bits (77), Expect = 4.9
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
 Frame = +2

Query: 32  RALKYKLQELY---SRFKKFCYVYKIQKATSMCLFPCHQSNFTFFYSS-PTFTDQHCTE- 196
           R L++K+Q+L    S F+K  Y+    K+    + P HQS   F +SS PT    +C + 
Sbjct: 329 RVLRHKIQKLTMIKSLFQKRSYLETFMKSLVWTIVP-HQSYSHFMHSSSPTINSLNCFDN 387

Query: 197 ------PLNVHFDKLPFVIQIAYV 250
                  +  HF + P++++  YV
Sbjct: 388 VIKAFHQMCFHFGQNPYILKYTYV 411


>tr|A0EFA4|A0EFA4_PARTE Chromosome undetermined scaffold_93, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00026318001 PE=4 SV=1
          Length = 345

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = -2

Query: 495 HVHFVENL---IAWFKVEVKKEHRQKKQQ--QWCQEHWCQD*KR*RVRKAGHSTADTKIP 331
           H H +  L   I   K  + +E +Q K +  Q+C++ +CQ+ ++ +  KA H     ++ 
Sbjct: 180 HYHKLRTLLEKIKEHKFSMSEEMKQFKHELEQFCKQDFCQESEKKKKVKANHDQQQNELE 239

Query: 330 LVQNPCFPYMVDLTNVNEDMK 268
            VQ  C   + D  N N+ ++
Sbjct: 240 KVQQNCIIKVEDEDNKNDILR 260