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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921172
Clone id YMU001_000146_E10
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGTTAAGAACCCACAGTTCATCAGATTTTAGGAAGATGGCAAAGTACCTCTAGCGAAAGC
TTTGGCAAGTGATGCAATAGCTCTCGAGAGGCATGAGTGCAAAGAAGGGACCAGCAAGCA
ATTCGCAAGCATTGTGCAAACCTGCCATAACAATGCTTCTCTGATAAATGATTGTAGCAT
GCAAAAGTGTCAACCTTCAAATCATTGAGGGCAAGCCCCAGCAGAGCCATTCAAGTCTTC
AACTTGAGGCCATCGTGTCGGCATTAAGTTGTCAATCTTCGGCAGAGACATTAAGCTGTG
TTGTTGAGTTCAGAAGCAACAATCGCCTTTCAAATGAGAATGTGTCGTTGATGCAAAACA
GGGTACAACAAGCTCATGGTAGCGATAAAGATGTATGCGGATTGTGGGTATCTCGAACAT
AGTCGAGACACATAGCAGGAGGGAGTTCGCAGGTGATTTTACGGGAGATATTTACAGTTG
CGCATATGTGGGAGATTGTTTGAGCATTGG
■■Homology search results ■■ -
sp_hit_id Q8GYD9
Definition sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana
Align length 63
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921172|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_E10.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis t...    32   1.7  
sp|Q75E60|SSU72_ASHGO RNA polymerase II subunit A C-terminal dom...    30   8.5  
sp|Q557H3|U505_DICDI UPF0505 protein OS=Dictyostelium discoideum...    30   8.6  

>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis
           thaliana GN=SDE3 PE=2 SV=1
          Length = 1002

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 111 PASNSQALCKPAITMLL**MIVACKSVNLQIIEGKPQQSHSSLQLEAIVSALSCQSSAET 290
           PA N++ +C          M++ CK     +I G P    +   +EAIV   + Q +A  
Sbjct: 395 PALNAEQICSIE-------MVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARV 447

Query: 291 LSC 299
           L C
Sbjct: 448 LVC 450


>sp|Q75E60|SSU72_ASHGO RNA polymerase II subunit A C-terminal domain
           phosphatase SSU72 OS=Ashbya gossypii GN=SSU72 PE=3 SV=1
          Length = 281

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 247 RPSCRH*VVNLRQRH*AVLLSSEATIAFQMRMCR*CKTGYNKLMVAIKMYADCGY 411
           RP C     + R R  ++++SSE      +R+C  C +  N+ M + ++  + GY
Sbjct: 57  RPECG--AASFRTRQSSLMVSSEMPNTSTLRLCTVCASNNNRSMESHRVLKEAGY 109


>sp|Q557H3|U505_DICDI UPF0505 protein OS=Dictyostelium discoideum
           GN=DDB_G0273473 PE=3 SV=1
          Length = 987

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +3

Query: 210 GKPQQSHSSLQLEAIVSALSCQSSAETLSCVVEFRSNNRLSNENVSLMQNRVQQAH 377
           GKP+QS  S    ++ SA +  SS+ T +  ++  +NN  +N ++  + N +++ H
Sbjct: 62  GKPKQSSLSSNASSLQSAAAAASSS-TATTDIDPLNNNNNNNTDIDPLNNPLEKKH 116
tr_hit_id A9SSF2
Definition tr|A9SSF2|A9SSF2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 56
Score (bit) 43.1
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921172|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_E10.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SSF2|A9SSF2_PHYPA Predicted protein OS=Physcomitrella paten...    43   8e-04
tr|A9TYP3|A9TYP3_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.002
tr|A9T5J2|A9T5J2_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.006
tr|Q5JMG9|Q5JMG9_ORYSJ cDNA clone:J023048I08, full insert sequen...    42   0.017
tr|B8A8S9|B8A8S9_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.017
tr|A3A186|A3A186_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.017
tr|A7NW28|A7NW28_VITVI Chromosome chr5 scaffold_2, whole genome ...    41   0.029
tr|Q12MA1|Q12MA1_SHEDO Putative uncharacterized protein OS=Shewa...    35   2.7  
tr|B6U240|B6U240_MAIZE Cell division cycle protein 20 OS=Zea may...    35   2.7  
tr|A9B5X3|A9B5X3_HERA2 Amino acid adenylation domain OS=Herpetos...    33   6.1  
tr|Q8I240|Q8I240_PLAF7 Putative uncharacterized protein PFA0510w...    33   8.0  

>tr|A9SSF2|A9SSF2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_134565 PE=4 SV=1
          Length = 801

 Score = 43.1 bits (100), Expect(2) = 8e-04
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -2

Query: 209 LNDLKVDTFACYNHLSEKHCYGRFAQCLRIACWSLLCTHASRELLHHLPKLSLEVL 42
           +++L  + F  Y   +E   YG   + +R ACW  LC  A+ EL   LPKLS + L
Sbjct: 137 ISELWTENFLAYQAFAESQDYGVHGERVRKACWGYLCRGAAVELREILPKLSTQTL 192



 Score = 22.7 bits (47), Expect(2) = 8e-04
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -3

Query: 31  LKSDELWVLN 2
           L SDELWVLN
Sbjct: 196 LTSDELWVLN 205


>tr|A9TYP3|A9TYP3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_30287 PE=4 SV=1
          Length = 761

 Score = 43.5 bits (101), Expect(2) = 0.002
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -2

Query: 209 LNDLKVDTFACYNHLSEKHCYGRFAQCLRIACWSLLCTHASRELLHHLPKLSLEVL 42
           +++L  D F  Y   +E   YG   + +R ACW  LC   + EL   LPKLS + L
Sbjct: 117 ISELWTDNFLAYQAFAENQDYGLHGERVRKACWGYLCRGGAVELREILPKLSAQTL 172



 Score = 20.8 bits (42), Expect(2) = 0.002
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 31  LKSDELWVLN 2
           L SDELWVL+
Sbjct: 176 LASDELWVLS 185


>tr|A9T5J2|A9T5J2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_219111 PE=4 SV=1
          Length = 786

 Score = 42.0 bits (97), Expect(2) = 0.006
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -2

Query: 209 LNDLKVDTFACYNHLSEKHCYGRFAQCLRIACWSLLCTHASRELLHHLPKLSLEVL 42
           +++L  + F  Y   +E   YG   + +R ACW  LC   + EL   LPKLS + L
Sbjct: 123 ISELYTENFLAYQAFAESQDYGVHGERVRKACWGYLCRGGAVELREILPKLSTQTL 178



 Score = 20.8 bits (42), Expect(2) = 0.006
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 31  LKSDELWVLN 2
           L SDELWVL+
Sbjct: 182 LTSDELWVLS 191


>tr|Q5JMG9|Q5JMG9_ORYSJ cDNA clone:J023048I08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0506E04.35 PE=2 SV=1
          Length = 806

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -2

Query: 209 LNDLKVDTFACYNHLSEKHCYGRFAQCLRIACWSLLCTHASRELLHHLPKLSLEVL 42
           +++L    F  Y   +E   YG   + +R ACW  LC  A+ EL   LPKLS + L
Sbjct: 163 ISELWTSNFLQYQLFAESQDYGSHGERVRNACWGYLCQSATLELREVLPKLSSQTL 218


>tr|B8A8S9|B8A8S9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05070 PE=4 SV=1
          Length = 819

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -2

Query: 209 LNDLKVDTFACYNHLSEKHCYGRFAQCLRIACWSLLCTHASRELLHHLPKLSLEVL 42
           +++L    F  Y   +E   YG   + +R ACW  LC  A+ EL   LPKLS + L
Sbjct: 163 ISELWTSNFLQYQLFAESQDYGSHGERVRNACWGYLCQSATLELREVLPKLSSQTL 218


>tr|A3A186|A3A186_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004558 PE=4 SV=1
          Length = 694

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = -2

Query: 209 LNDLKVDTFACYNHLSEKHCYGRFAQCLRIACWSLLCTHASRELLHHLPKLSLEVL 42
           +++L    F  Y   +E   YG   + +R ACW  LC  A+ EL   LPKLS + L
Sbjct: 163 ISELWTSNFLQYQLFAESQDYGSHGERVRNACWGYLCQSATLELREVLPKLSSQTL 218


>tr|A7NW28|A7NW28_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019759001
           PE=4 SV=1
          Length = 823

 Score = 41.2 bits (95), Expect = 0.029
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 209 LNDLKVDTFACYNHLSEKHCYGRFAQCLRIACWSLLCTHASRELLHHLPKLSLEVL 42
           +++L    F  Y   +E   YG   + +R ACW  LC   + EL   LPKLS + L
Sbjct: 156 ISELWTSNFLAYQVFAESQDYGIHGERVRNACWGYLCQSGAMELKEVLPKLSSQTL 211


>tr|Q12MA1|Q12MA1_SHEDO Putative uncharacterized protein
           OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=Sden_2143 PE=4 SV=1
          Length = 215

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 451 CELPPAMCLDYVRDTHNPHTSLSLP*AC--CTLFCINDTFS 335
           CE P  + +DY R +H PH SL+LP AC  C     N+T +
Sbjct: 18  CEEPCNLSVDYYRQSHCPHPSLTLP-ACKECATLAKNNTLT 57


>tr|B6U240|B6U240_MAIZE Cell division cycle protein 20 OS=Zea mays
           PE=2 SV=1
          Length = 483

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 21/84 (25%), Positives = 43/84 (51%)
 Frame = +3

Query: 246 EAIVSALSCQSSAETLSCVVEFRSNNRLSNENVSLMQNRVQQAHGSDKDVCGLWVSRT*S 425
           EA V +L+  +S  T  C+     + ++ N +V +  + VQ+  G  ++VCGL  S +  
Sbjct: 248 EARVGSLAWNNSVLTTGCM-----DGKIVNNDVRIRDHVVQRYEGHSQEVCGLKWSGSGQ 302

Query: 426 RHIAGGSSQVILREIFTVAHMWEI 497
           +  +GG+  ++        H+W++
Sbjct: 303 QLASGGNDNLL--------HIWDV 318


>tr|A9B5X3|A9B5X3_HERA2 Amino acid adenylation domain
           OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
           785) GN=Haur_3129 PE=4 SV=1
          Length = 1816

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 38/126 (30%), Positives = 48/126 (38%)
 Frame = -2

Query: 416 SRYPQSAYIFIATMSLLYPVLHQRHILI*KAIVASELNNTAXXXXXXXXXXXRHDGLKLK 237
           +R P+   +     +L Y  L+QR             N  A              GL + 
Sbjct: 513 ARVPERTALHFEGQTLSYAELNQR------------ANQLAHSLRQRGIGCDMRVGLFID 560

Query: 236 T*MALLGLALNDLKVDTFACYNHLSEKHCYGRFAQCLRIACWSLLCTHASRELLHHLPKL 57
             + LL  AL  LK    A Y  +   +   R +  L     SLL THA  EL   LPKL
Sbjct: 561 RSLDLLVGALGILKAG--AAYVPIDPIYPQDRISAMLEDGAVSLLLTHA--ELAAELPKL 616

Query: 56  SLEVLC 39
            LEVLC
Sbjct: 617 DLEVLC 622