BP921179 |
Clone id |
YMU001_000146_F06 |
Library |
YMU01 |
Length |
392 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000146_F06. |
Accession |
BP921179 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
GAGACATGGAAGACGCATAGTGTGTCAGAATCAGGATTCACCTCATTAACATACAAAAGC AATCATTGAGCAAGGGCACTGGTGTTGTACACTAAGAGGGCACCAGCCAACAAGATAGCG CCGAGGGTAACTGCCCAGATAGCCAATCCAGTAGGACCTGCAGCATAGCTATCACCAGAA GTTGACCATTCCTCTGGGACATAGATAGGGCTGTATCCATCGACATTAGCACCATACTTC TTGGTATATAGGTAGACTCCCTTCCCCTTAGCTTTGCGACCAGAGGCATCCAGGTTACCC TTGAATTTGGTATCGCCGGAAGGTCCCAAGGGAGTTTTGGTCGAGATCTTCTTGACACCA CTTGCCTCGATTCTGGGGGAGCGGGCGGATAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P06183 |
Definition |
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum |
Align length |
108 |
Score (bit) |
126.0 |
E-value |
3.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921179|Adiantum capillus-veneris mRNA, clone: YMU001_000146_F06. (392 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 126 3e-29 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 126 3e-29 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 125 7e-29 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 124 1e-28 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 123 3e-28 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 122 7e-28 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 121 9e-28 sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis... 33 0.58 sp|A1WL60|Y2624_VEREI UPF0247 protein Veis_2624 OS=Verminephroba... 30 3.8 sp|Q1RMQ3|SYS1_BOVIN Protein SYS1 homolog OS=Bos taurus GN=SYS1 ... 30 3.8 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 4.9 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 4.9 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 4.9 sp|Q78S06|SYS1_MOUSE Protein SYS1 homolog OS=Mus musculus GN=Sys... 29 6.4 sp|P59741|FADL_SHIFL Long-chain fatty acid transport protein OS=... 29 6.4 sp|P10384|FADL_ECOLI Long-chain fatty acid transport protein OS=... 29 6.4 sp|Q5QNQ9|CORA1_MOUSE Collagen alpha-1(XXVII) chain OS=Mus muscu... 29 6.4 sp|P08688|ALB2_PEA Albumin-2 OS=Pisum sativum PE=2 SV=1 29 6.4 sp|Q08471|YO066_YEAST Putative transcriptional activator YOR066W... 29 8.4 sp|O14559|TCGAP_HUMAN TC10/CDC42 GTPase-activating protein OS=Ho... 29 8.4 sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteri... 29 8.4 sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 h... 29 8.4 sp|Q8XCN6|FADL_ECO57 Long-chain fatty acid transport protein OS=... 29 8.4 sp|Q4PR41|EXP25_ORYSJ Expansin-A25 OS=Oryza sativa subsp. japoni... 29 8.4 sp|P19251|ASNS1_PEA Asparagine synthetase, nodule [glutamine-hyd... 29 8.4 sp|Q65GC0|ARAA1_BACLD L-arabinose isomerase 1 OS=Bacillus lichen... 29 8.4
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 126 bits (317), Expect = 3e-29 Identities = 65/108 (60%), Positives = 73/108 (67%) Frame = -1
Query: 389 SARSPRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYLYTKKYGANVDGYS 210 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVY Y KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 209 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 66 PIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 126 bits (317), Expect = 3e-29 Identities = 65/108 (60%), Positives = 73/108 (67%) Frame = -1
Query: 389 SARSPRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYLYTKKYGANVDGYS 210 S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVY Y KYGANVDGYS Sbjct: 31 SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYS 90
Query: 209 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 66 PIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 91 PIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 125 bits (314), Expect = 7e-29 Identities = 63/108 (58%), Positives = 74/108 (68%) Frame = -1
Query: 389 SARSPRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYLYTKKYGANVDGYS 210 S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVY + KYGANVDGYS Sbjct: 29 SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYS 88
Query: 209 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 66 PIY ++WS SGD Y G TGLAIWAVT LV+NTSALAQ Sbjct: 89 PIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 124 bits (312), Expect = 1e-28 Identities = 66/108 (61%), Positives = 71/108 (65%) Frame = -1
Query: 389 SARSPRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYLYTKKYGANVDGYS 210 S S RI ASGVKKI T P G +G + +DASGRK KG GVY + KYGANVDGYS Sbjct: 34 SPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYS 93
Query: 209 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 66 PIY +EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 94 PIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 123 bits (308), Expect = 3e-28 Identities = 64/103 (62%), Positives = 68/103 (66%) Frame = -1
Query: 374 RIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYLYTKKYGANVDGYSPIYVP 195 +I ASGVKKI T P G +G + +DASGRK KG GVY Y KYGANVDGYSPIY Sbjct: 38 KIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNE 97
Query: 194 EEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 66 EWS SGD Y G TGLAIWAVT LVYNTSALAQ Sbjct: 98 NEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 122 bits (305), Expect = 7e-28 Identities = 63/108 (58%), Positives = 71/108 (65%) Frame = -1
Query: 389 SARSPRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYLYTKKYGANVDGYS 210 S+ S + ASGVKKI PLG G K + +D+SGRK GKGVY + KYGANVDGYS Sbjct: 33 SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYS 92
Query: 209 PIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALAQ 66 PIY EEW+ +GD YA G TGL IWAVT LVYNTSALAQ Sbjct: 93 PIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 121 bits (304), Expect = 9e-28 Identities = 61/101 (60%), Positives = 66/101 (65%) Frame = -1
Query: 371 IEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYLYTKKYGANVDGYSPIYVPE 192 I A KK+ T P GP G FK +DASGR AKGKGVY + KYGANVDGYSPIY PE Sbjct: 37 IVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPE 96
Query: 191 EWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXLVYNTSALA 69 EWS SGD Y G TGL +WAVT LVY+TSALA Sbjct: 97 EWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Length = 349
Score = 32.7 bits (73), Expect = 0.58 Identities = 22/68 (32%), Positives = 28/68 (41%) Frame = -2
Query: 388 PPAPPESRQVVSRRSRPKLPWDLPAIPNSRVTWMPLVAKLRGRESTYIPRSMVLMSMDTA 209 PPAPP+S VS S P P P S T P A + + P+S +S Sbjct: 217 PPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPSSAPMTSPPGSMAPKSSSPVSNSPT 276
Query: 208 LSMSQRNG 185 +S S G Sbjct: 277 VSPSLAPG 284
>sp|A1WL60|Y2624_VEREI UPF0247 protein Veis_2624 OS=Verminephrobacter eiseniae (strain EF01-2) GN=Veis_2624 PE=3 SV=1 Length = 155
Score = 30.0 bits (66), Expect = 3.8 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = -2
Query: 355 SRRSRPKLPWDLPAI---PNSRVTWMPLVAKLRGRESTYIPRSMVLMSMDTALSMSQRNG 185 ++R P+L +L A+ P + T L+A RGR IPR ++++D +R Sbjct: 24 AKRLPPELKLELKAVKTEPRAGKTLASLLAAERGRIEAAIPRGAQVVALD------ERGT 77
Query: 184 QLLVIAMLQVLLDW 143 +L +A+ + L W Sbjct: 78 RLTTLALAERLRGW 91
>sp|Q1RMQ3|SYS1_BOVIN Protein SYS1 homolog OS=Bos taurus GN=SYS1 PE=2 SV=1 Length = 156
Score = 30.0 bits (66), Expect = 3.8 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = -2
Query: 265 GRESTYIPRSMVLMSMDTALSMS---QRNGQLL----VIAMLQVLLDWL-SGQLPSALSC 110 GR ST S VL ++ AL + +R Q L + +L WL S + PSAL+ Sbjct: 63 GRLSTM---SFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTW 119
Query: 109 WLVPS*CTTPVPLLNDCFCM 50 WLV + C + ++ + CM Sbjct: 120 WLVQAVCIALMAVIGEYLCM 139
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PIM0 |
Definition |
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
109 |
Score (bit) |
135.0 |
E-value |
1.0e-30 |
Report |
|