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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921186
Clone id YMU001_000146_G01
Library
Length 406
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACAGATGAGAATCTCACCAAGAGGGAGAAGAAAAAGAAGAAGAGAAGAAAGGGTGAAGA
AGGTCAGGACTTGCTTTACATTGATTACAAAGATGCAAATGGCTCTACTGGGCAGAGTAA
GAAGCTGCAATATGACACATCCACTGACAAACAACAGCTCAAGGAACCGAATAAGATCGT
AAAACCAGACGTTGCGGATGTACCACAGAACAATCACAGTCTTTTTATACTCTCTAGCAG
ACCAACATTTAGCATGGCTGTTGCAGGCTCAATCGTTGATAATGCTCAATCTCTTAAGTT
GGCAACCATGCTGGCAGGGCAAATAGCAAGGGCTGCGGCAATCTTTACAGTTGATGAGAT
TGTGGTCTTTGATGACTACGATGGGGAAAATACATCGAACTACATG
■■Homology search results ■■ -
sp_hit_id Q3UHX9
Definition sp|Q3UHX9|CI114_MOUSE Uncharacterized protein C9orf114 homolog OS=Mus musculus
Align length 52
Score (bit) 62.4
E-value 7.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921186|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_G01.
         (406 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UHX9|CI114_MOUSE Uncharacterized protein C9orf114 homolog O...    62   7e-10
sp|Q5T280|CI114_HUMAN Uncharacterized protein C9orf114 OS=Homo s...    62   9e-10
sp|Q10950|YMP6_CAEEL Uncharacterized protein B0361.6 OS=Caenorha...    56   6e-08
sp|Q06847|Y1688_HALSA Uncharacterized protein VNG_1688C OS=Halob...    46   5e-05
sp|P53336|YG5X_YEAST Uncharacterized protein YGR283C OS=Saccharo...    40   0.004
sp|P20571|Y1612_HALMA Uncharacterized protein rrnAC1612 OS=Haloa...    39   0.008
sp|Q04867|YM91_YEAST Uncharacterized protein YMR310C OS=Saccharo...    33   0.57 
sp|Q8TCZ9|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 ...    32   0.74 
sp|A7E2Y1|MYH7B_HUMAN Myosin-7B OS=Homo sapiens GN=MYH7B PE=2 SV=2     30   2.8  
sp|Q94AH9|FBRL2_ARATH rRNA 2'-O-methyltransferase fibrillarin 2 ...    29   6.3  
sp|Q02539|H11_HUMAN Histone H1.1 OS=Homo sapiens GN=HIST1H1A PE=...    29   8.2  

>sp|Q3UHX9|CI114_MOUSE Uncharacterized protein C9orf114 homolog
           OS=Mus musculus GN=D2Wsu81e PE=2 SV=1
          Length = 385

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 33/52 (63%), Positives = 42/52 (80%)
 Frame = +2

Query: 245 TFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFDDYDGENTSN 400
           T S+A+ GSI+DNAQS +L T LAGQIARA  IF VDEIVVFD+ +G++T +
Sbjct: 75  TLSVALPGSILDNAQSPELRTYLAGQIARACTIFCVDEIVVFDE-EGQDTKS 125


>sp|Q5T280|CI114_HUMAN Uncharacterized protein C9orf114 OS=Homo
           sapiens GN=C9orf114 PE=1 SV=3
          Length = 376

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 32/44 (72%), Positives = 37/44 (84%)
 Frame = +2

Query: 245 TFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFDD 376
           T S+A+ GSI+DNAQS +L T LAGQIARA AIF VDEIVVFD+
Sbjct: 74  TLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDE 117


>sp|Q10950|YMP6_CAEEL Uncharacterized protein B0361.6
           OS=Caenorhabditis elegans GN=B0361.6 PE=2 SV=1
          Length = 378

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = +2

Query: 113 QSKKLQYDTSTDKQQLKEPNKIVKPDVADVPQNNHSLFILSSRP-TFSMAVAGSIVDNAQ 289
           + ++L +    D+++ K   KI+K   A+  +      +  + P T S+AV G  ++NAQ
Sbjct: 24  KEERLDWRKMKDEKKRKNEEKIIKE--AEEAKKAKIEKVDHTPPFTISIAVPGQFLNNAQ 81

Query: 290 SLKLATMLAGQIARAAAIFTVDEIVVFDD 376
           S +L T +AGQIARAA ++ VDEI+++D+
Sbjct: 82  SAELRTYMAGQIARAATLYRVDEIIIYDE 110


>sp|Q06847|Y1688_HALSA Uncharacterized protein VNG_1688C
           OS=Halobacterium salinarium GN=VNG_1688C PE=4 SV=2
          Length = 283

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 23/48 (47%), Positives = 31/48 (64%)
 Frame = +2

Query: 245 TFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFDDYDGE 388
           T S+ V  S+V  A+  + AT   G +ARAAA+F +D +VVF D DGE
Sbjct: 2   TRSVLVPSSLVREAEDKREATRKLGYVARAAAVFRIDRVVVFPDEDGE 49


>sp|P53336|YG5X_YEAST Uncharacterized protein YGR283C
           OS=Saccharomyces cerevisiae GN=YGR283C PE=1 SV=1
          Length = 341

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +2

Query: 248 FSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFD 373
           +S+ +  +++DN  +L+  T  A QIAR A +F V EI+V D
Sbjct: 40  YSICIPTTVIDNCNNLEQVTFTAYQIARTAVLFNVQEIIVLD 81


>sp|P20571|Y1612_HALMA Uncharacterized protein rrnAC1612
           OS=Haloarcula marismortui GN=rrnAC1612 PE=4 SV=2
          Length = 281

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +2

Query: 245 TFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFDDYDG 385
           T S+ V  S+   A+  + AT   G +ARAAA++ VD + V+ D DG
Sbjct: 2   TTSVLVPSSLAREAEDRREATRKLGYVARAAAVYRVDRLTVYPDPDG 48


>sp|Q04867|YM91_YEAST Uncharacterized protein YMR310C
           OS=Saccharomyces cerevisiae GN=YMR310C PE=1 SV=1
          Length = 317

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +2

Query: 230 LSSRPTFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFDD 376
           LS    +S+ +  ++V + ++L   T    Q+A+ A++F V E+V+ +D
Sbjct: 14  LSQTRHYSLCIPTTLVSDCRNLSQITHKVYQVAKFASLFNVSEVVILED 62


>sp|Q8TCZ9|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1
          Length = 4074

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -2

Query: 282  LSTIEPATAMLNVGLLESIKRL*LFCGTSATSGFTILFGSLSCCLSVDVSYCSFLLCPVE 103
            L  +EP+ A    GL  +I+      G+S      ILFGS SC ++V  S  S + C V 
Sbjct: 1021 LDMVEPSRAADIGGLWATIR------GSSLEGVSLILFGSYSCAINVATSNSSRIQCKVP 1074

Query: 102  P 100
            P
Sbjct: 1075 P 1075


>sp|A7E2Y1|MYH7B_HUMAN Myosin-7B OS=Homo sapiens GN=MYH7B PE=2 SV=2
          Length = 1941

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 89   KDANGSTGQSKKLQYDTSTDKQQLKEPNKIVKPDVADVPQNNHSL 223
            +D   S  Q KKL+ DT   K++L+   K+ +  VAD  Q+   L
Sbjct: 1039 EDLECSLEQEKKLRMDTERAKRKLEGDLKLTQESVADAAQDKQQL 1083


>sp|Q94AH9|FBRL2_ARATH rRNA 2'-O-methyltransferase fibrillarin 2
           OS=Arabidopsis thaliana GN=FIB2 PE=1 SV=2
          Length = 320

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/71 (21%), Positives = 30/71 (42%)
 Frame = -1

Query: 295 KRLSIIND*ACNSHAKCWSAREYKKTVIVLWYIRNVWFYDLIRFLELLFVSGCVILQLLT 116
           KR+S+ N+    +  + W+    K    +L  + N+W     + L L   SG  +  +  
Sbjct: 115 KRISVQNEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSD 174

Query: 115 LPSRAICIFVI 83
           L     C++ +
Sbjct: 175 LVGPEGCVYAV 185
tr_hit_id A9RD11
Definition tr|A9RD11|A9RD11_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 73.9
E-value 4.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921186|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_G01.
         (406 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RD11|A9RD11_PHYPA Predicted protein (Fragment) OS=Physcomit...    74   4e-12
tr|B6TIL9|B6TIL9_MAIZE Conserved protein OS=Zea mays PE=2 SV=1         73   8e-12
tr|Q0JEM0|Q0JEM0_ORYSJ Os04g0244500 protein OS=Oryza sativa subs...    72   2e-11
tr|Q01HL5|Q01HL5_ORYSA H0211F06-OSIGBa0153M17.3 protein OS=Oryza...    72   2e-11
tr|B8AR73|B8AR73_ORYSI Putative uncharacterized protein OS=Oryza...    72   2e-11
tr|Q6NLH7|Q6NLH7_ARATH At5g19300 (Putative uncharacterized prote...    69   1e-10
tr|A7NWI7|A7NWI7_VITVI Chromosome chr5 scaffold_2, whole genome ...    68   3e-10
tr|A5ASC7|A5ASC7_VITVI Putative uncharacterized protein OS=Vitis...    68   3e-10
tr|B8C296|B8C296_THAPS Predicted protein (Fragment) OS=Thalassio...    65   2e-09
tr|Q16R76|Q16R76_AEDAE Putative uncharacterized protein OS=Aedes...    65   2e-09
tr|A7UR97|A7UR97_ANOGA AGAP007570-PA OS=Anopheles gambiae GN=AGA...    65   2e-09
tr|Q4TGH2|Q4TGH2_TETNG Chromosome undetermined SCAF3709, whole g...    64   4e-09
tr|Q4SQF9|Q4SQF9_TETNG Chromosome 4 SCAF14533, whole genome shot...    64   4e-09
tr|B0WJL6|B0WJL6_CULQU Putative uncharacterized protein OS=Culex...    63   8e-09
tr|Q66L45|Q66L45_MOUSE D2Wsu81e protein OS=Mus musculus GN=D2Wsu...    62   1e-08
tr|A2AQY6|A2AQY6_MOUSE DNA segment Chr 2 Wayne State University ...    62   1e-08
tr|Q6NRR6|Q6NRR6_XENLA MGC82267 protein OS=Xenopus laevis GN=MGC...    62   1e-08
tr|Q07GA7|Q07GA7_XENTR Novel protein OS=Xenopus tropicalis GN=TN...    61   3e-08
tr|Q0CC25|Q0CC25_ASPTN Deoxyribose-phosphate aldolase 2 OS=Asper...    61   3e-08
tr|Q66ID3|Q66ID3_DANRE Zgc:101748 OS=Danio rerio GN=zgc:101748 P...    60   4e-08
tr|B0KWE0|B0KWE0_CALJA Putative uncharacterized protein C9ORF114...    60   4e-08
tr|Q2U4H5|Q2U4H5_ASPOR Uncharacterized conserved protein OS=Aspe...    60   4e-08
tr|B6NM99|B6NM99_BRAFL Putative uncharacterized protein OS=Branc...    60   5e-08
tr|Q0P4M0|Q0P4M0_XENTR Putative uncharacterized protein LOC54948...    59   9e-08
tr|B3RPB5|B3RPB5_TRIAD Putative uncharacterized protein OS=Trich...    59   9e-08
tr|A6RI92|A6RI92_BOTFB Putative uncharacterized protein OS=Botry...    59   9e-08
tr|A2QXP8|A2QXP8_ASPNC Contig An11c0330, complete genome OS=Aspe...    59   9e-08
tr|B6AF32|B6AF32_9CRYT Putative uncharacterized protein OS=Crypt...    59   2e-07
tr|B4KU57|B4KU57_DROMO GI20065 OS=Drosophila mojavensis GN=GI200...    59   2e-07
tr|A8Q2J0|A8Q2J0_BRUMA Uncharacterized ACR, COG2106 family prote...    59   2e-07

>tr|A9RD11|A9RD11_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_23193 PE=4 SV=1
          Length = 296

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 40/48 (83%), Positives = 42/48 (87%)
 Frame = +2

Query: 239 RPTFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFDDYD 382
           R T SMAVAGSIVDNAQSL LA+ LAGQIARAAAIF +DEIVVFDD D
Sbjct: 2   RFTISMAVAGSIVDNAQSLVLASRLAGQIARAAAIFRIDEIVVFDDGD 49


>tr|B6TIL9|B6TIL9_MAIZE Conserved protein OS=Zea mays PE=2 SV=1
          Length = 365

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 34/45 (75%), Positives = 42/45 (93%)
 Frame = +2

Query: 239 RPTFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFD 373
           +PT S+AVAGSI+DNAQSL+LAT+LAGQIARAA +F +DE+VVFD
Sbjct: 68  KPTVSIAVAGSIIDNAQSLELATLLAGQIARAATVFRIDEVVVFD 112


>tr|Q0JEM0|Q0JEM0_ORYSJ Os04g0244500 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0244500 PE=2 SV=1
          Length = 358

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/56 (60%), Positives = 46/56 (82%)
 Frame = +2

Query: 206 QNNHSLFILSSRPTFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFD 373
           +N   + + + + T S+AVAGSI+DNAQSL+LAT+LAGQIARAA +F +DE+VVFD
Sbjct: 55  KNGDDVAVPNRKTTVSIAVAGSIIDNAQSLELATLLAGQIARAATVFRIDEVVVFD 110


>tr|Q01HL5|Q01HL5_ORYSA H0211F06-OSIGBa0153M17.3 protein OS=Oryza
           sativa GN=H0211F06-OSIGBa0153M17.3 PE=4 SV=1
          Length = 358

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/56 (60%), Positives = 46/56 (82%)
 Frame = +2

Query: 206 QNNHSLFILSSRPTFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFD 373
           +N   + + + + T S+AVAGSI+DNAQSL+LAT+LAGQIARAA +F +DE+VVFD
Sbjct: 55  KNGDDVAVPNRKTTVSIAVAGSIIDNAQSLELATLLAGQIARAATVFRIDEVVVFD 110


>tr|B8AR73|B8AR73_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15076 PE=4 SV=1
          Length = 212

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/56 (60%), Positives = 46/56 (82%)
 Frame = +2

Query: 206 QNNHSLFILSSRPTFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFD 373
           +N   + + + + T S+AVAGSI+DNAQSL+LAT+LAGQIARAA +F +DE+VVFD
Sbjct: 55  KNGDDVAVPNRKTTVSIAVAGSIIDNAQSLELATLLAGQIARAATVFRIDEVVVFD 110


>tr|Q6NLH7|Q6NLH7_ARATH At5g19300 (Putative uncharacterized protein
           At5g19300) OS=Arabidopsis thaliana GN=At5g19300 PE=2
           SV=1
          Length = 398

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
 Frame = +2

Query: 146 DKQQLKEPNKIV-KPDVADVPQNNHSLFILSSRPTFSMAVAGSIVDNAQSLKLATMLAGQ 322
           +K Q +EP  +  K  V +  + N    +   R T S+A+AGSI+ N QSL+LAT LAGQ
Sbjct: 69  NKNQEEEPELVTEKTKVQEEEKGN----VEEGRATVSIAIAGSIIHNTQSLELATRLAGQ 124

Query: 323 IARAAAIFTVDEIVVFDD 376
           IARAA IF +DEIVVFD+
Sbjct: 125 IARAATIFRIDEIVVFDN 142


>tr|A7NWI7|A7NWI7_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019936001
           PE=4 SV=1
          Length = 363

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
 Frame = +2

Query: 113 QSKKLQYDTSTDKQQLKEPNKIVKPDVADVPQNNHS---LFILSSRPTFSMAVAGSIVDN 283
           + ++  ++  T+    +   +++  D     + N +    +  +  PT ++AV GSI+ N
Sbjct: 5   KKRRSDFEAETENNTAENETELINGDSRSKKKKNKTHKDKYQATDIPTLTIAVPGSIIHN 64

Query: 284 AQSLKLATMLAGQIARAAAIFTVDEIVVFD 373
           AQSL+LAT LAGQIARAA IF +DE+VVFD
Sbjct: 65  AQSLELATRLAGQIARAATIFRIDEVVVFD 94


>tr|A5ASC7|A5ASC7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012192 PE=4 SV=1
          Length = 363

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
 Frame = +2

Query: 113 QSKKLQYDTSTDKQQLKEPNKIVKPDVADVPQNNHS---LFILSSRPTFSMAVAGSIVDN 283
           + ++  ++  T+    +   +++  D     + N +    +  +  PT ++AV GSI+ N
Sbjct: 5   KKRRSDFEAETENNTAENETELINGDSRSKKKKNKTHKDKYQATDIPTLTIAVPGSIIHN 64

Query: 284 AQSLKLATMLAGQIARAAAIFTVDEIVVFD--DYDGENTS 397
           AQSL+LAT LAGQ+ARAA IF +DE+VVFD     G+N++
Sbjct: 65  AQSLELATRLAGQVARAATIFRIDEVVVFDCKSTSGDNST 104


>tr|B8C296|B8C296_THAPS Predicted protein (Fragment)
           OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_34021
           PE=4 SV=1
          Length = 328

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 31/45 (68%), Positives = 38/45 (84%)
 Frame = +2

Query: 242 PTFSMAVAGSIVDNAQSLKLATMLAGQIARAAAIFTVDEIVVFDD 376
           PT S+A+ GS+V NAQ+ +L T LAGQIARAAA++ VDEIVVFDD
Sbjct: 12  PTVSIAIPGSVVSNAQTRELQTQLAGQIARAAAVYRVDEIVVFDD 56


>tr|Q16R76|Q16R76_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL011052 PE=4 SV=1
          Length = 438

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 37/76 (48%), Positives = 49/76 (64%)
 Frame = +2

Query: 149 KQQLKEPNKIVKPDVADVPQNNHSLFILSSRPTFSMAVAGSIVDNAQSLKLATMLAGQIA 328
           K+  +E  ++ +   A+V     ++       T S+AV GSI+DNAQS +L T LAGQIA
Sbjct: 39  KRVQREFEQVERDKAAEVEVKVEAVPAAELVSTLSIAVPGSILDNAQSPELRTYLAGQIA 98

Query: 329 RAAAIFTVDEIVVFDD 376
           RAA IF VDE+VVFDD
Sbjct: 99  RAACIFQVDEVVVFDD 114