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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921194
Clone id YMU001_000146_G09
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAAGGGAGACAGAAATAATTGGACCTATCAGATTGGAGAATGCAAATGAGAAAAAGCAG
AACAATGTGTGCAGACAGGTTTTTGCAAAAGTATAATACAATGCGGTTATATCTTCTGAA
TGAATTGTCGATGCATAATCTTGCAGCTGGAACTGCATGTGGCATTGGTATAGGTTTTGA
TGGATTTTGAAGCCTTGAATGTGAGCTCACTTGCCATCCATCGTCTCTAACCTACTTCAA
GGGTGGTTGTGCGCGGTTGAAAGGGAGGCTCAGAGTCTTAATGCCTCCCATACTCCCATC
ATTTGCTTCTACCTTCAGTAGGGAAAGACCATTGACCTACTTTGCCTTGCAAATATGTTG
GGTGTATGAGTATTTTACTTTTACCACACCTTCTGTAGTGGACCATTTAACCATGTACAA
TTTTGTATAGTATTGGGCAGCTAACTCTTGCCTCAAAAGTACATTGTAAACAATAGTCAT
CTGTATAGAACTACACTACGTTAATAGTGGCAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P18163
Definition sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus
Align length 35
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921194|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_G09.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattu...    32   1.3  
sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus...    32   1.3  
sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Hom...    32   1.7  
sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cav...    31   3.8  
sp|Q06FL4|CEMA_PELHO Chloroplast envelope membrane protein OS=Pe...    30   5.0  
sp|Q6PLS1|POLG_ASGVK Genome polyprotein OS=Apple stem grooving v...    30   6.5  
sp|P51066|ACEA_SALTY Isocitrate lyase OS=Salmonella typhimurium ...    30   8.5  
sp|Q2HZX7|FUZZY_XENTR Protein fuzzy homolog OS=Xenopus tropicali...    30   8.6  

>sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus
           norvegicus GN=Acsl1 PE=1 SV=1
          Length = 699

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 194 LECELTCHPSSLTYFKGGCARLKGRLRVLMPPILP 298
           +EC + CH + + +F+G    L   L+VL P I P
Sbjct: 331 VECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFP 365


>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus
           musculus GN=Acsl1 PE=1 SV=1
          Length = 699

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 194 LECELTCHPSSLTYFKGGCARLKGRLRVLMPPILP 298
           +EC + CH + + +F+G    L   L+VL P I P
Sbjct: 331 VECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFP 365


>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo
           sapiens GN=ACSL1 PE=1 SV=1
          Length = 698

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 194 LECELTCHPSSLTYFKGGCARLKGRLRVLMPPILP 298
           +EC + CH + + +F+G    L   L+VL P + P
Sbjct: 330 VECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFP 364


>sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia
           porcellus GN=ACSL1 PE=2 SV=1
          Length = 698

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 194 LECELTCHPSSLTYFKGGCARLKGRLRVLMPPILP 298
           L+C + CH + + +F+G    L   L+ L P I P
Sbjct: 330 LQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFP 364


>sp|Q06FL4|CEMA_PELHO Chloroplast envelope membrane protein
           OS=Pelargonium hortorum GN=cemA-A PE=3 SV=1
          Length = 229

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 131 STIHSEDITALYYTFAKTCLHTLFCFFSFAFSNLIGPIISV 9
           S +H++ + +L      + LHT++ F++F + N + P + V
Sbjct: 180 SVVHNDQMRSLLVCLFPSVLHTIYYFWTFNYLNCVSPSLVV 220


>sp|Q6PLS1|POLG_ASGVK Genome polyprotein OS=Apple stem grooving virus
            (strain Korea) PE=3 SV=1
          Length = 2105

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -2

Query: 474  IVYNVLLRQELAAQYYTKLYMVKWSTTEGVVKVKYSYTQHICKAK*VNGLSLLKVEANDG 295
            ++ + L RQ  A ++   +   +W +           T H C  + V+ + +LK E ++G
Sbjct: 1781 VIQDGLHRQSAAVKHLNTMKRSRWRSW---------ITNHRCFWRKVHRMCILKKECSEG 1831

Query: 294  SMGGIKTLSLP 262
            +  G + LSLP
Sbjct: 1832 TRSGGRALSLP 1842


>sp|P51066|ACEA_SALTY Isocitrate lyase OS=Salmonella typhimurium
           GN=aceA PE=3 SV=2
          Length = 434

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -2

Query: 321 LLKVEANDGSMGGIKTLS--LPFNRAQPPLK*VRDDGWQVSSHSRLQN---PSKPIPMPH 157
           LL  EA  G +  +  L+      +A+  ++ +   GWQV++ + L +   P + +   +
Sbjct: 56  LLHGEAKKGYINSLGALTGGQALQQAKAGIEAIYLSGWQVAADANLASSMYPDQSLYPAN 115

Query: 156 AVPAARLCIDNSFRRYNRI 100
           +VPA    I+N+FRR ++I
Sbjct: 116 SVPAVVDRINNTFRRADQI 134


>sp|Q2HZX7|FUZZY_XENTR Protein fuzzy homolog OS=Xenopus tropicalis
           GN=fuz PE=2 SV=1
          Length = 418

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +3

Query: 57  AEQCVQTGFCKSIIQCGYIF*MNCRCIILQLELHVALV*VLMDFEALNVSSLA 215
           +E+  Q+GF  S  QC Y    +C+C  ++ ELH+  + +  +    ++ S+A
Sbjct: 354 SEESFQSGFSHSAHQC-YTISSSCKCYGMKTELHLLFLLLKPEVPTFSMRSIA 405
tr_hit_id A9TGH0
Definition tr|A9TGH0|A9TGH0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 104
Score (bit) 33.5
E-value 6.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921194|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_G09.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TGH0|A9TGH0_PHYPA Predicted protein OS=Physcomitrella paten...    33   6.2  

>tr|A9TGH0|A9TGH0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_169946 PE=4 SV=1
          Length = 4890

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
 Frame = -2

Query: 333  NGLSLLKVEANDGSMGGIKTLSLPFNRAQPPLK*VRDDGWQVSSHSRLQNPSKPIPMPHA 154
            NG   L++++     GG K + L   R    LK V   GWQ      L      I  P  
Sbjct: 3662 NGKEFLEIQSESVEPGGSKAIILADLRKALYLKWVPQSGWQPQGDDCL------ISQPGK 3715

Query: 153  VPAARLCIDNSFRRYNRIVLYFC---KNLSAHIVLLFLICILQS 31
             PA  + + N  R    I + +C    ++SA ++  ++ C L S
Sbjct: 3716 DPAKEVVVTNGVRDL-AIHMQYCHGNNDISARVIQFYVPCWLDS 3758