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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921195
Clone id YMU001_000146_G10
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAACATGAAGGGGCTAAAGTGAGTCACAAACATGCTTTACCTTATTGTAAGCAACGCCAA
CTAGAATGAGACATTCTTGCTAACTGGATTGCTTGGTGCTAATGTACATGCTTTGCATAT
CCTTCATCACAAGAGTGCACTTGTAACGTGTAATATGCCTATCCTCTTTGGATTTTGACA
GTATTGAGATGTCGTTTGTCCCACGGTTTACAGAGAGTGATCCTATATGAGTGGTAAATG
AGGATCACAATATCATACAACATTGCTGAGCAAACCATCGTGGTTAACTTGAAATATCCA
CAAGCACCCAAATTGAGCCATGACCTCGATTGACAGATCCAAAAGTAATCACATAGAGAG
ATGACACATAAAGTGCAAAATGCTTCATAAAGAACAACTTGATCAATATGCATGCCGTTC
GAAATCAGCGTTTGCTAAACCCTAGGACCCATAACAACTAATGTGCTTGCATTTAGCAAA
AAATAGATCCAAACCTATATATCCATAATCGTCCTTGCCAATACTTATGGAAAATGTGGT
GCT
■■Homology search results ■■ -
sp_hit_id Q00578
Definition sp|Q00578|RAD25_YEAST DNA repair helicase RAD25 OS=Saccharomyces cerevisiae
Align length 77
Score (bit) 31.2
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921195|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_G10.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00578|RAD25_YEAST DNA repair helicase RAD25 OS=Saccharomyces...    31   3.4  
sp|P25149|YWAF_BACSU Uncharacterized protein ywaF OS=Bacillus su...    30   5.8  
sp|Q60997|DMBT1_MOUSE Deleted in malignant brain tumors 1 protei...    30   5.8  
sp|P82795|LCR86_ARATH Putative low-molecular-weight cysteine-ric...    30   9.9  

>sp|Q00578|RAD25_YEAST DNA repair helicase RAD25 OS=Saccharomyces
           cerevisiae GN=RAD25 PE=1 SV=1
          Length = 843

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = -3

Query: 259 CMIL*SSFTTHIGSLSVNRGTNDISILSKSKEDRHITRYKCTLVMKDMQSMYISTKQSS* 80
           C+I  SS   H GS           + +K + D     +  +LV KD Q MY STK+   
Sbjct: 669 CLIQISS---HYGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSTKR--- 722

Query: 79  QECLILVGVAYNKVKHV 29
           Q  L+  G A+  + H+
Sbjct: 723 QAFLVDQGYAFKVITHL 739


>sp|P25149|YWAF_BACSU Uncharacterized protein ywaF OS=Bacillus
           subtilis GN=ywaF PE=4 SV=1
          Length = 237

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 397 LFFMKHFALYVSSLYVITFGSVNRGHGSIWVLV 299
           LFF+ H ++++S L +   G+   G  S+WV V
Sbjct: 138 LFFISHGSVFLSCLLMAVIGTYRMGQRSLWVTV 170


>sp|Q60997|DMBT1_MOUSE Deleted in malignant brain tumors 1 protein
           OS=Mus musculus GN=Dmbt1 PE=1 SV=2
          Length = 2085

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 350 DYFWICQSRSWLNLGACGYFKLTTMVCSA 264
           DY W C  R WL+   CG+ +   ++CSA
Sbjct: 398 DYLWRCSHRGWLSHN-CGHHEDAGVICSA 425



 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 350 DYFWICQSRSWLNLGACGYFKLTTMVCSA 264
           DY W C  R WL+   CG+ +   ++CSA
Sbjct: 537 DYLWRCSHRGWLSHN-CGHHEDAGVICSA 564



 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 350 DYFWICQSRSWLNLGACGYFKLTTMVCSA 264
           DY W C  R WL+   CG+ +   ++CSA
Sbjct: 676 DYLWRCSHRGWLSHN-CGHHEDAGVICSA 703



 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 350 DYFWICQSRSWLNLGACGYFKLTTMVCSA 264
           DY W C  R WL+   CG+ +   ++CSA
Sbjct: 815 DYLWRCSHRGWLSHN-CGHHEDAGVICSA 842


>sp|P82795|LCR86_ARATH Putative low-molecular-weight cysteine-rich
           protein LCR86 OS=Arabidopsis thaliana GN=LCR86 PE=3 SV=1
          Length = 85

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 419 NGMHIDQVVLYEAFCTLCVISLCDYFWICQSRSWLNLGACGYFKLTTMVC 270
           N + +   + Y + CT    S+CD   IC S  + N   CG F+L T  C
Sbjct: 26  NAIDVHDAMCYRSECT----SVCDQ--ICLSHGYTNGWYCGTFRLHTGCC 69
tr_hit_id B0ERF0
Definition tr|B0ERF0|B0ERF0_ENTDI Putative uncharacterized protein OS=Entamoeba dispar SAW760
Align length 126
Score (bit) 36.2
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921195|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_G10.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0ERF0|B0ERF0_ENTDI Putative uncharacterized protein OS=Entam...    36   1.1  
tr|Q8RK98|Q8RK98_MYCHO Putative uncharacterized protein OS=Mycop...    33   9.7  
tr|B0D9Z5|B0D9Z5_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.7  

>tr|B0ERF0|B0ERF0_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_021390 PE=4 SV=1
          Length = 630

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 30/126 (23%), Positives = 48/126 (38%)
 Frame = -2

Query: 428 LISNGMHIDQVVLYEAFCTLCVISLCDYFWICQSRSWLNLGACGYFKLTTMVCSAMLYDI 249
           L++ GM I   V+  +  TLC++SLC  F +C    W N      F +   V       +
Sbjct: 440 LLTVGMSI---VMGNSIITLCLVSLCILFTLCALAFWFNTKYNLSFNIIISVLVLFFVGV 496

Query: 248 VILIYHSYRITLCKPWDKRHLNTVKIQRG*AYYTLQVHSCDEGYAKHVH*HQAIQLARMS 69
            I+I  SY I                      YT  ++    GY+  V+ ++ +    +S
Sbjct: 497 AIVIGVSYLIQ-------------------PDYTCSINDNRTGYSLTVNLNEKVPKQLVS 537

Query: 68  HSSWRC 51
              W C
Sbjct: 538 QLPWNC 543


>tr|Q8RK98|Q8RK98_MYCHO Putative uncharacterized protein
           OS=Mycoplasma hominis PE=4 SV=1
          Length = 337

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
 Frame = -2

Query: 491 WIYFLLNASTLVVMGPRV*QTLISNGMHIDQVVLYEAFCTLCVISLCDYFWICQSR---- 324
           W+ F+LN S + +  P   + LI N ++  +++L   +     ++LC+ FWIC       
Sbjct: 49  WLEFILNISLIPMQRPNY-KGLIENFLNYKKLILNNNY-----LNLCNSFWICSQEESCK 102

Query: 323 -SW--------LNLGACGYF 291
            +W         N  +C YF
Sbjct: 103 LNWEDVNYFDHFNNDSCNYF 122


>tr|B0D9Z5|B0D9Z5_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_184863 PE=4 SV=1
          Length = 769

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -3

Query: 259 CMIL*SSFTTHIGSLSVNRGTNDISILSKSKEDRHITRYKCTLVMKDMQSMYISTKQSS* 80
           C+I  SS   H GS           + +K + D     +  +LV KD Q MY STK+   
Sbjct: 571 CLIQISS---HFGSRRQEAQRLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSTKR--- 624

Query: 79  QECLILVGVAYNKVKHV 29
           Q+ LI  G A+  + H+
Sbjct: 625 QQFLIDQGYAFKVITHL 641