NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921197
Clone id YMU001_000146_G12
Library
Length 387
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGCGGACTATGGCTGGCTTATCCTGCCAATGGTGGAGCAGATGCTAGCAGGAAATATG
CTGGAGGCTTCACTGCGCCAACTACGTAAACATATCTGTTTACTCTAGTCGGTGGTGGTA
TGAGGTAGTAAGATTAGGGTTTAGATTGGGGTGGTTTAACAGTGTTATGCAGATAATCAA
ACTTTAAGTGCTATTTCAAGAGAAGGCAACCTGGTTGCTTCATGGCAGTAACAGCGACTA
CTACTACTACTAATACTTAATAGTACTCGGAGCAGTTGCTGAAGTCATGGAGTTGAAGGT
GGCTCCAGATCGCTTGCAAACTATAAGGTTAGAATGGTCTGGTAATCCATCTTTGAGCAG
GTTGAGCTCTTGCATTTCCAATGCGTA
■■Homology search results ■■ -
sp_hit_id O13880
Definition sp|O13880|VHT1_SCHPO Vitamin H transporter 1 OS=Schizosaccharomyces pombe
Align length 70
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921197|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_G12.
         (387 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O13880|VHT1_SCHPO Vitamin H transporter 1 OS=Schizosaccharomy...    33   0.45 
sp|Q0SPY4|CARB_CLOPS Carbamoyl-phosphate synthase large chain OS...    31   2.2  
sp|Q8XHB3|CARB_CLOPE Carbamoyl-phosphate synthase large chain OS...    31   2.2  
sp|Q0TM79|CARB_CLOP1 Carbamoyl-phosphate synthase large chain OS...    30   4.9  

>sp|O13880|VHT1_SCHPO Vitamin H transporter 1 OS=Schizosaccharomyces
           pombe GN=vht1 PE=2 SV=1
          Length = 568

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +2

Query: 92  ISVYSSRWWYEVVRLGFRLGWFNSVMQIIKL*VLFQEKATWLLHGSNSDYYYY*YLIVLG 271
           ++ Y SRW Y    LG R+GW+ +  QI    V         + G+   Y Y    ++ G
Sbjct: 205 LAYYMSRW-YRGKHLGKRIGWYYTAAQIAAAAVSLVSAGFQKMDGARGLYGYQWMFLIWG 263

Query: 272 AVAEVMELKV 301
            VA    L +
Sbjct: 264 VVAIAQALSI 273


>sp|Q0SPY4|CARB_CLOPS Carbamoyl-phosphate synthase large chain
           OS=Clostridium perfringens (strain SM101 / Type A)
           GN=carB PE=3 SV=1
          Length = 1067

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
 Frame = +2

Query: 122 EVVRLGFRLGWFNSVMQIIKL*VLFQEKATWL------LHGSNSDYYYY*YLIVLG---- 271
           E++R G+R+   + V +I  + + F EK  WL      L  S  D     +L+ L     
Sbjct: 437 EMLRRGYRI---DMVSKITGIDIFFLEKFRWLVEEEQKLKQSTIDDLNREWLLKLKRRGF 493

Query: 272 ---AVAEVMELKVAPDRLQTIRLEWSGNPSLSRLSSC 373
              A+A++  LKV+PD +  +R  W   PS   + +C
Sbjct: 494 SDKAIADM--LKVSPDEIYRLRDIWHIKPSYKMVDTC 528


>sp|Q8XHB3|CARB_CLOPE Carbamoyl-phosphate synthase large chain
           OS=Clostridium perfringens GN=carB PE=3 SV=1
          Length = 1067

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
 Frame = +2

Query: 122 EVVRLGFRLGWFNSVMQIIKL*VLFQEKATWL------LHGSNSDYYYY*YLIVLG---- 271
           E++R G+R+   + V +I  + + F EK  WL      L  S  D     +L+ L     
Sbjct: 437 EMLRRGYRI---DMVSKITGIDIFFLEKFRWLVEEEQKLKQSTIDDLNREWLLKLKRRGF 493

Query: 272 ---AVAEVMELKVAPDRLQTIRLEWSGNPSLSRLSSC 373
              A+A++  LKV+PD +  +R  W   PS   + +C
Sbjct: 494 SDKAIADM--LKVSPDEIYRLRDIWHIKPSYKMVDTC 528


>sp|Q0TM79|CARB_CLOP1 Carbamoyl-phosphate synthase large chain
           OS=Clostridium perfringens (strain ATCC 13124 / NCTC
           8237 / Type A) GN=carB PE=3 SV=1
          Length = 1067

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
 Frame = +2

Query: 122 EVVRLGFRLGWFNSVMQIIKL*VLFQEKATWL------LHGSNSDYYYY*YLIVLG---- 271
           E++R G+R+   + V +I  + + F EK  WL      L  S  D     +L+ L     
Sbjct: 437 EMLRRGYRI---DMVSKITGIDIFFLEKFRWLVEEEQKLKQSTIDDLNREWLLKLKRRGF 493

Query: 272 ---AVAEVMELKVAPDRLQTIRLEWSGNPSLSRLSSC 373
              A+A++  LKV+PD +  +R  W   P+   + +C
Sbjct: 494 SDKAIADM--LKVSPDEIYRLRDIWHIKPAYKMVDTC 528
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921197|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_G12.
         (387 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******