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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921198
Clone id YMU001_000146_H01
Library
Length 337
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTACACAAGCAACTCAGTGCATCCATCACATTGCCACAAAAGACACTGACAGATTACA
AATATAGCACAATCTTGAAACTCAAGATTGCTTGGATCAAATGCAGCAATGTAATGCTGC
AGGCAGCAAATAAGCAACCAGACTATGCCGCATTCCGGAAGAGACTGTCTCGTTACATAT
AACTTTCACAAAAAGGGAGCAACAGCCCCACACCTTCAAAATTTAGTTGATGATGATCAT
CTCTGAGTAACCGCCTCAGTGGGCCACCAAGAGCAGTCAAATCAAACACTTCACGTTGAT
ATACTCGGACCAAGCAGCGGTAATATTTCTTCAATAA
■■Homology search results ■■ -
sp_hit_id Q80WL2
Definition sp|Q80WL2|BYST_RAT Bystin OS=Rattus norvegicus
Align length 62
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921198|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_H01.
         (337 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80WL2|BYST_RAT Bystin OS=Rattus norvegicus GN=Bysl PE=2 SV=3       32   0.76 
sp|O54825|BYST_MOUSE Bystin OS=Mus musculus GN=Bysl PE=1 SV=3          32   1.3  
sp|Q13895|BYST_HUMAN Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3          32   1.3  
sp|Q5E9N0|BYST_BOVIN Bystin OS=Bos taurus GN=BYSL PE=2 SV=1            32   1.3  
sp|Q8BHB0|NOD1_MOUSE Nucleotide-binding oligomerization domain-c...    31   1.7  
sp|Q6CKI3|RMD9_KLULA Protein RMD9, mitochondrial OS=Kluyveromyce...    30   4.9  
sp|A9UNU6|BYST_MONBE Bystin OS=Monosiga brevicollis GN=bysl PE=3...    29   6.4  
sp|P17214|EST1_YEAST Telomere elongation protein EST1 OS=Sacchar...    29   6.4  

>sp|Q80WL2|BYST_RAT Bystin OS=Rattus norvegicus GN=Bysl PE=2 SV=3
          Length = 436

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 208 GLLLPFCESYM*RDSLFRNAA*SGCLFAACSITLLHLIQAILSFKIVLYL*SVSVFCGNV 29
           G+L+P CES        R A   G + + CSI +LH   A+L    + Y  + S+F   +
Sbjct: 288 GILIPLCES---GTCTLREAIIVGSIISKCSIPVLHSSAAMLKIAEMEYSGASSIFLRLL 344

Query: 28  MD 23
           +D
Sbjct: 345 LD 346


>sp|O54825|BYST_MOUSE Bystin OS=Mus musculus GN=Bysl PE=1 SV=3
          Length = 436

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 208 GLLLPFCESYM*RDSLFRNAA*SGCLFAACSITLLHLIQAILSFKIVLYL*SVSVFCGNV 29
           G+L+P CES        R A   G +   CSI +LH   A+L    + Y  + S+F   +
Sbjct: 288 GILIPLCES---GTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLL 344

Query: 28  MD 23
           +D
Sbjct: 345 LD 346


>sp|Q13895|BYST_HUMAN Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3
          Length = 437

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 208 GLLLPFCESYM*RDSLFRNAA*SGCLFAACSITLLHLIQAILSFKIVLYL*SVSVFCGNV 29
           G+L+P CES        R A   G +   CSI +LH   A+L    + Y  + S+F   +
Sbjct: 289 GILIPLCES---GTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLL 345

Query: 28  MD 23
           +D
Sbjct: 346 LD 347


>sp|Q5E9N0|BYST_BOVIN Bystin OS=Bos taurus GN=BYSL PE=2 SV=1
          Length = 435

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 208 GLLLPFCESYM*RDSLFRNAA*SGCLFAACSITLLHLIQAILSFKIVLYL*SVSVFCGNV 29
           G+L+P CES        R A   G +   CSI +LH   A+L    + Y  + S+F   +
Sbjct: 287 GILIPLCES---GTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLL 343

Query: 28  MD 23
           +D
Sbjct: 344 LD 345


>sp|Q8BHB0|NOD1_MOUSE Nucleotide-binding oligomerization
           domain-containing protein 1 OS=Mus musculus GN=Nod1 PE=2
           SV=1
          Length = 953

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -3

Query: 152 CGI---VWLLICCLQHYIAAFDPSNLEFQDCAI 63
           CG+    W++  C QH+   F+ S+ +  DCA+
Sbjct: 388 CGVPLFCWIIFRCFQHFQTVFEGSSSQLPDCAV 420


>sp|Q6CKI3|RMD9_KLULA Protein RMD9, mitochondrial OS=Kluyveromyces
           lactis GN=RMD9 PE=3 SV=1
          Length = 664

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 48  LTDYKYSTILKLKIAWIKCSNVMLQAANKQPDY--AAFRKRLSRYI 179
           L +++ S +++L    +K +   L + NK+PDY   +F K ++ Y+
Sbjct: 152 LNNHRASRVIQLMHVALKVNRTQLTSMNKKPDYDSQSFHKEMTNYL 197


>sp|A9UNU6|BYST_MONBE Bystin OS=Monosiga brevicollis GN=bysl PE=3
           SV=1
          Length = 414

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -1

Query: 208 GLLLPFCESYM*RDSLFRNAA*SGCLFAACSITLLHLIQAILSFKIVLYL*SVSVFCGNV 29
           G LLP CE+    D   R A   G +    SI +LH   A+L    + Y  + S+F   +
Sbjct: 265 GFLLPLCEA---GDCTLREAVIIGGILVRKSIPVLHSSAAMLKMAEMPYSGATSIFLRVL 321

Query: 28  MD 23
           +D
Sbjct: 322 LD 323


>sp|P17214|EST1_YEAST Telomere elongation protein EST1
           OS=Saccharomyces cerevisiae GN=EST1 PE=1 SV=2
          Length = 699

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 39  QKTLTDYKYSTILKLKIAWIKCSNVMLQAANK 134
           QK + D++Y  I++L + WIK    +LQ  ++
Sbjct: 424 QKNMEDFRYLAIIRLLMCWIKSYRSILQYTHR 455
tr_hit_id B8QQ60
Definition tr|B8QQ60|B8QQ60_9TELE RNF213 (Fragment) OS=Hoplostethus atlanticus
Align length 53
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921198|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_H01.
         (337 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8QQ60|B8QQ60_9TELE RNF213 (Fragment) OS=Hoplostethus atlanti...    35   1.9  
tr|B8QQC0|B8QQC0_SYNVE RNF213 (Fragment) OS=Synanceia verrucosa ...    35   2.5  
tr|B8QQB5|B8QQB5_9PERO RNF213 (Fragment) OS=Sillago sihama GN=RN...    35   2.5  
tr|B8QQA2|B8QQA2_9PERC RNF213 (Fragment) OS=Psettodes belcheri G...    35   2.5  
tr|B8QQ95|B8QQ95_9TELE RNF213 (Fragment) OS=Photoblepharon palpe...    35   2.5  
tr|B8QQ78|B8QQ78_9PERC RNF213 (Fragment) OS=Mola mola GN=RNF213 ...    34   3.2  
tr|B3SA57|B3SA57_TRIAD Putative uncharacterized protein OS=Trich...    33   5.5  
tr|B8QQ57|B8QQ57_9PERC RNF213 (Fragment) OS=Gnathanodon speciosu...    33   7.2  
tr|B8QQ50|B8QQ50_ECHNA RNF213 (Fragment) OS=Echeneis naucrates G...    33   7.2  
tr|B8QQ40|B8QQ40_9PERC RNF213 (Fragment) OS=Chloroscombrus chrys...    33   7.2  
tr|B6HNR0|B6HNR0_PENCH Pc21g13850 protein OS=Penicillium chrysog...    33   7.2  
tr|B8QQ99|B8QQ99_9PERO RNF213 (Fragment) OS=Pomadasys perotaei G...    33   9.3  
tr|B8QQ74|B8QQ74_9PERO RNF213 (Fragment) OS=Mene maculata GN=RNF...    33   9.3  
tr|B8QQ28|B8QQ28_BOTPO RNF213 (Fragment) OS=Bothus podas GN=RNF2...    33   9.3  
tr|Q8F602|Q8F602_LEPIN Putative uncharacterized protein OS=Lepto...    33   9.4  
tr|Q72Q61|Q72Q61_LEPIC Putative uncharacterized protein OS=Lepto...    33   9.4  

>tr|B8QQ60|B8QQ60_9TELE RNF213 (Fragment) OS=Hoplostethus atlanticus
           GN=RNF213 PE=4 SV=1
          Length = 317

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   KK  + PH     +DDH+ +T  +G   Q N+  HVD + P+SG +
Sbjct: 33  LAPFLIRKKWESEPHPYIFFNDDHVSMTF-IGFHLQPNEQNHVDAIDPTSGRV 84


>tr|B8QQC0|B8QQC0_SYNVE RNF213 (Fragment) OS=Synanceia verrucosa
           GN=RNF213 PE=4 SV=1
          Length = 328

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   K+  T PH     +DDH+ +T  +G   Q NQ   VD++ P+SG +
Sbjct: 39  LAPFLIRKRWETEPHPYIFFNDDHMSMTF-IGFHLQPNQQNSVDVIEPTSGKV 90


>tr|B8QQB5|B8QQB5_9PERO RNF213 (Fragment) OS=Sillago sihama
           GN=RNF213 PE=4 SV=1
          Length = 328

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   K+  T PH     +DDH+ +T  +G   Q N+  HVD + P SG +
Sbjct: 39  LAPFLMRKRWETEPHPYIFFNDDHVSMT-FIGFHLQPNEQNHVDAIDPHSGRV 90


>tr|B8QQA2|B8QQA2_9PERC RNF213 (Fragment) OS=Psettodes belcheri
           GN=RNF213 PE=4 SV=1
          Length = 328

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   KK  T PH     +DDH+ +T  +G   Q NQ   VD + PSSG +
Sbjct: 39  LAPFLIRKKWETEPHPYIFFNDDHVSMT-FIGFHLQPNQENFVDAVEPSSGRV 90


>tr|B8QQ95|B8QQ95_9TELE RNF213 (Fragment) OS=Photoblepharon
           palpebratum GN=RNF213 PE=4 SV=1
          Length = 322

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   KK  + PH     +DDH+ +T  +G   Q N+  HVD + P+SG +
Sbjct: 33  LAPFLIRKKWESEPHPYIFFNDDHVSMTF-IGFHLQLNEQNHVDAIDPTSGRV 84


>tr|B8QQ78|B8QQ78_9PERC RNF213 (Fragment) OS=Mola mola GN=RNF213
           PE=4 SV=1
          Length = 328

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   K+  T PH     +DDH+ +T  +G   Q N+  +VD + PSSG I
Sbjct: 39  LAPFLIRKRWETEPHPYIFFNDDHVSMTF-IGFHLQPNEQNYVDAIEPSSGKI 90


>tr|B3SA57|B3SA57_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_61141 PE=4 SV=1
          Length = 443

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = -1

Query: 208 GLLLPFCESYM*RDSLFRNAA*SGCLFAACSITLLHLIQAILSFKIVLYL*SVSVFCGNV 29
           G+LLP CE+   R+   R A   G +    SIT LH   AIL    + Y  + S+F   +
Sbjct: 294 GILLPLCEA---RNCSLREAVIIGSILNKTSITSLHACAAILKLTELEYTGANSIFIRIL 350

Query: 28  MD 23
           +D
Sbjct: 351 LD 352


>tr|B8QQ57|B8QQ57_9PERC RNF213 (Fragment) OS=Gnathanodon speciosus
           GN=RNF213 PE=4 SV=1
          Length = 328

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   K+  T PH     +DDH+ +T  +G   Q N+   VD + P+SG +
Sbjct: 39  LAPFKIRKRWETEPHPYIFFNDDHVSMT-FIGFHLQPNEENFVDAIDPTSGRV 90


>tr|B8QQ50|B8QQ50_ECHNA RNF213 (Fragment) OS=Echeneis naucrates
           GN=RNF213 PE=4 SV=1
          Length = 328

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   K+  T PH     +DDH+ +T  +G   Q N+  +VD + P+SG +
Sbjct: 39  LAPFLIRKRWETEPHPYIFFNDDHVSMTF-IGFHLQPNERKYVDAIEPASGKV 90


>tr|B8QQ40|B8QQ40_9PERC RNF213 (Fragment) OS=Chloroscombrus
           chrysurus GN=RNF213 PE=4 SV=1
          Length = 328

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 169 LVTYNFHKKGATAPHLQNLVDDDHL*VTASVGHQEQSNQTLHVDILGPSSGNI 327
           L  +   K+  T PH     +DDH+ +T  +G   Q N+   VD + P+SG +
Sbjct: 39  LAPFKIRKRWETEPHPYIFFNDDHVSMT-FIGFHLQPNEQNFVDAIDPTSGRV 90