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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921199
Clone id YMU001_000146_H03
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCTCGAGTTAATGATGATGATGATGGTGGGATCGTGTCGGCCATATCTATCTCTCTTAGC
ATCTCCTCTGAAGTATCATAAAACACTGCCTGGTGATGGGCAGTCCTAGCATTGAAGTCC
CCAAGGATGATAATGTCACCGTCCCTAGAGAACTCCCATATGTCATCATCCAAAATAGAG
AAAGGGGACTGTCCTCTGGGTGGTGCATAAACTGATGTACTCGAGGAAAAGTAACAAATA
GCTAGATAGAGGTATCTGTCTGTCTCTGCTTTCAGTCTCACCCACATGTACCTAGCCTGC
TCGTCCCTGCGGGCTATATGTATTAGTGGCTGTAGATCCTCTCTAAATAACACTGCCACT
CCTCCCGAGCCCCGCCCTCTGTGCTCTGAGCGTGTCTCCTGTCTGTAGGCTCTCTCCCAC
CTATATCCACTGATGTGAGGCATGGATTGCCCAGGGGCCTGGTGTGTCTCAGAGTAGAAG
ATGATGTCTCTTCCAGTAAAGCTATCCTCAAAAGCACCC
■■Homology search results ■■ -
sp_hit_id Q9UTK1
Definition sp|Q9UTK1|COX16_SCHPO Cytochrome c oxidase-assembly factor cox16, mitochondrial OS=Schizosaccharomyces pombe
Align length 56
Score (bit) 31.2
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921199|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_H03.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UTK1|COX16_SCHPO Cytochrome c oxidase-assembly factor cox16...    31   3.0  
sp|P0AB89|PUR8_ECOLI Adenylosuccinate lyase OS=Escherichia coli ...    30   5.2  
sp|P0AB90|PUR8_ECOL6 Adenylosuccinate lyase OS=Escherichia coli ...    30   5.2  
sp|Q48935|APHA_MYCRA Acetylpolyamine aminohydrolase OS=Mycoplana...    30   8.8  

>sp|Q9UTK1|COX16_SCHPO Cytochrome c oxidase-assembly factor cox16,
           mitochondrial OS=Schizosaccharomyces pombe GN=cox16 PE=2
           SV=1
          Length = 113

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 284 WVRLKAETDRYLYLAICYFSSSTSVYA--PPRGQSPFSILDDDIWEFSRDGDIIIL 123
           W RL+A+   ++Y+ + + SS   V++   P  Q  F+  D+ +   SRD ++ I+
Sbjct: 9   WYRLQAKKSPFIYVGLPFLSSVLLVWSCLIPISQVKFNRRDEQVKSLSRDAELDII 64


>sp|P0AB89|PUR8_ECOLI Adenylosuccinate lyase OS=Escherichia coli
           (strain K12) GN=purB PE=1 SV=1
          Length = 456

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = -2

Query: 491 RDIIFYSETHQAP------GQSMPHISGYRWERAYRQETRSEHRGRGSGGV 357
           RDI   S TH  P      G+ M +++ YR ER YRQ  + E  G+ +G V
Sbjct: 162 RDIPLLSRTHGQPATPSTIGKEMANVA-YRMERQYRQLNQVEILGKINGAV 211


>sp|P0AB90|PUR8_ECOL6 Adenylosuccinate lyase OS=Escherichia coli O6
           GN=purB PE=3 SV=1
          Length = 456

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = -2

Query: 491 RDIIFYSETHQAP------GQSMPHISGYRWERAYRQETRSEHRGRGSGGV 357
           RDI   S TH  P      G+ M +++ YR ER YRQ  + E  G+ +G V
Sbjct: 162 RDIPLLSRTHGQPATPSTIGKEMANVA-YRMERQYRQLNQVEILGKINGAV 211


>sp|Q48935|APHA_MYCRA Acetylpolyamine aminohydrolase OS=Mycoplana
           ramosa GN=aphA PE=1 SV=1
          Length = 341

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 509 EDSFTGRDIIFYSETHQAPGQSMPHISGYRWERAYRQETRSEHRGRGSG 363
           +D F  R  +F++  H  P ++ PH  GY           +E  G+G+G
Sbjct: 203 QDIFYERGDVFFASLHGDPAEAFPHFLGY-----------AEETGKGAG 240
tr_hit_id A9SK31
Definition tr|A9SK31|A9SK31_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 143
Score (bit) 55.1
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921199|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_H03.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SK31|A9SK31_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A7SDI1|A7SDI1_NEMVE Predicted protein OS=Nematostella vectens...    51   3e-05
tr|Q76IM1|Q76IM1_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    42   0.024
tr|Q08525|Q08525_CHICK Putative uncharacterized protein OS=Gallu...    40   0.053
tr|Q76IM3|Q76IM3_TETNG Pol-like protein OS=Tetraodon nigroviridi...    37   0.59 
tr|Q76IL9|Q76IL9_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    37   0.59 
tr|Q5UYT7|Q5UYT7_HALMA Putative uncharacterized protein OS=Haloa...    37   0.59 
tr|B1L6R1|B1L6R1_KORCO Putative uncharacterized protein OS=Korar...    36   1.0  
tr|B1L7N7|B1L7N7_KORCO Putative uncharacterized protein OS=Korar...    36   1.3  
tr|O42110|O42110_9SAUR ORF2 OS=Platemys spixii PE=4 SV=2               35   1.7  
tr|Q76IK7|Q76IK7_CIOIN Pol-like protein OS=Ciona intestinalis GN...    35   1.7  
tr|O00372|O00372_HUMAN Putative p150 OS=Homo sapiens PE=4 SV=1         35   2.2  
tr|A7RKQ9|A7RKQ9_NEMVE Predicted protein OS=Nematostella vectens...    35   2.9  
tr|B1DHF3|B1DHF3_9BACL Putative uncharacterized protein OS=Paeni...    34   5.0  
tr|Q2W414|Q2W414_MAGMM Dioxygenase related to 2-nitropropane dio...    33   8.5  

>tr|A9SK31|A9SK31_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_229896 PE=4 SV=1
          Length = 683

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
 Frame = -2

Query: 488 DIIFYSETHQAPGQSMPHISGYRWERAYRQETRSEHRGRGSGGVAVLFREDLQPLIHIAR 309
           D++F S+T Q  G  +P +  Y          RS+  G   GGVA  ++ D    I   +
Sbjct: 45  DLLFLSDTWQRKGHHLPELLDYDLISC-----RSDKAGN-RGGVACYYKHDYSFHILGYK 98

Query: 308 RDEQARYMWVRLKAET--DRYLYLAICYFSSSTSVYAPPRGQ----SPFSILDDDIWEFS 147
            D Q  Y+W++L      ++ L+ A+CYF   +S     R +     P+  L +DI+  S
Sbjct: 99  IDPQGHYLWLKLDKALGFEKDLFAAVCYFPPISSSAYDGRDRLEPSFPYKSLSNDIFSLS 158

Query: 146 RD---GDIIILGDFNARTAHHQA 87
           +     + +++GDFN+R    QA
Sbjct: 159 KKKNARNFLVVGDFNSRIGDAQA 181


>tr|A7SDI1|A7SDI1_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g210604 PE=4 SV=1
          Length = 1079

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 15/146 (10%)
 Frame = -2

Query: 401 QETRSEHRGRGSGGVAVLFREDLQPLIHIARRDEQARYMWVRLKAET---DRYLYLAICY 231
           ++  ++  GR SGG+ V         + + ++++   Y+W +L       D  +++  CY
Sbjct: 268 KKINTKKAGRSSGGILVAAASSFSRSVSVFKQEKD--YIWCKLDKRLLSLDEDIFICACY 325

Query: 230 FSSSTSVYAPPRGQSPFSILDDDIWEFSRDGDIIILGDFNARTA------------HHQA 87
              S S Y        FS L++DI  F   G I++LGD NART             H   
Sbjct: 326 IPPSNSPYFD---DEVFSNLENDIALFKGHGKILLLGDMNARTGNLRDYPENTDSRHTVD 382

Query: 86  VFYDTSEEMLREIDMADTIPPSSSSL 9
            FY T  + L+  ++   I  +  SL
Sbjct: 383 HFYPTPADSLKRKNLDSQINSNGKSL 408


>tr|Q76IM1|Q76IM1_DANRE Pol-like protein OS=Danio rerio GN=ORF2 PE=4
           SV=1
          Length = 1329

 Score = 41.6 bits (96), Expect = 0.024
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
 Frame = -2

Query: 488 DIIFYSETHQAPGQSMPHISGYRWERAYRQETRSEHRGRGSGGVAVLFREDLQPLIHIAR 309
           D++F  ETH         ++   W R Y       H    SGGVAVLF ++  P  +   
Sbjct: 66  DVLFVQETHSDA------LNACDWAREYNGLPILSHLSSVSGGVAVLFSKNFIPCSYQVE 119

Query: 308 RDEQARYMWVRLKAETDRYLYLAICYFSSSTSVYAPPRGQSPFSILD--DDIWEFSRDGD 135
                R + +R + E   ++++         SVY P R       L+   ++       D
Sbjct: 120 EIINGRLLKIRAQFENSVFVFI---------SVYVPTRAIERMCFLETLSNVLANCNTED 170

Query: 134 IIIL-GDFN 111
           ++IL GDFN
Sbjct: 171 VLILGGDFN 179


>tr|Q08525|Q08525_CHICK Putative uncharacterized protein OS=Gallus
           gallus PE=4 SV=2
          Length = 990

 Score = 40.4 bits (93), Expect = 0.053
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
 Frame = -2

Query: 392 RSEHRGRGSGGVAVLFRE--DLQPLIHIARRDEQARYMWVRLKAETDRYLYLAICYFSSS 219
           R + RGR  GGVA+  +E  D + L  +    EQ   +WVR++  T++   +   Y+   
Sbjct: 116 RRDRRGRKGGGVALYVKEWIDCEEL-PLRNSQEQVESLWVRIRDGTNKGQLVIGVYYR-- 172

Query: 218 TSVYAPPRGQSPFSILDDDIWEFSRDGDIIILGDFN 111
                P +G++        +WE S    ++++GDFN
Sbjct: 173 ----PPDQGEAVDEAFLLQMWEASCSQALVLVGDFN 204


>tr|Q76IM3|Q76IM3_TETNG Pol-like protein OS=Tetraodon nigroviridis
           GN=ORF2 PE=4 SV=1
          Length = 1302

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 5/131 (3%)
 Frame = -2

Query: 488 DIIFYSETHQAPGQSMPHISGYRWERAYRQETRSEHRGRGSGGVAVLFREDLQPLIHIAR 309
           D++   ETH              W RA+  E    H    SGGV VLF     P+     
Sbjct: 42  DVLLVQETHSCQKNHSD------WRRAFNGEAILSHGSSLSGGVGVLFARRFLPISFTT- 94

Query: 308 RDEQARYMWVRLKA--ETDRYLYLAICYFSSSTSVYAPP---RGQSPFSILDDDIWEFSR 144
            DE    + +++KA  E  + ++L         SVYAP       +  +IL D I   + 
Sbjct: 95  -DEIIPGVLLKVKAVFENVKLVFL---------SVYAPTNQVERMAFLNILSDCIANSAD 144

Query: 143 DGDIIILGDFN 111
           +G + + GDFN
Sbjct: 145 EGFMFLGGDFN 155


>tr|Q76IL9|Q76IL9_DANRE Pol-like protein OS=Danio rerio GN=ORF2 PE=4
           SV=1
          Length = 1267

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 3/129 (2%)
 Frame = -2

Query: 488 DIIFYSETHQAPGQSMPHISGYRWERAYRQETRSEHRGRGSGGVAVLFREDLQPLIHIAR 309
           ++IF  ETH              W   ++ E    H    S GVA+LF   L+  I +  
Sbjct: 51  NVIFLQETHSNSNNEA------EWGLCWKGEKVLSHGTNLSAGVAILFSSALKVQILMIN 104

Query: 308 RDEQARYMWVRLKAETDRYLYLAICYFSSSTSVYAPPRGQSPFSILD--DDIWEFSRDGD 135
             E  R + VR K     +L++         +VYA   G     +    +   +  +DGD
Sbjct: 105 EIELGRLVAVRAKINDLSFLFI---------NVYAQNNGADRLKLFSNLECFLKQQQDGD 155

Query: 134 IIIL-GDFN 111
            II+ GD+N
Sbjct: 156 FIIIGGDWN 164


>tr|Q5UYT7|Q5UYT7_HALMA Putative uncharacterized protein
           OS=Haloarcula marismortui GN=rrnAC2810 PE=4 SV=1
          Length = 329

 Score = 37.0 bits (84), Expect = 0.59
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = -2

Query: 185 PFSILDDDIWEFSRDGDIIILGDFNARTAH------HQAVFYDTSEEMLREIDMADTIPP 24
           P  + +D I E   DGD+I LGD +  T H      HQ VFYD + + +   D A    P
Sbjct: 158 PIPVAEDRI-ETLTDGDVIDLGDHSLETLHAPGHAPHQVVFYDPAIDGVFTADAAGIYNP 216

Query: 23  SSSSL 9
           S+  +
Sbjct: 217 STDEM 221


>tr|B1L6R1|B1L6R1_KORCO Putative uncharacterized protein
           OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1394
           PE=3 SV=1
          Length = 431

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = -2

Query: 503 SFTGRDIIFYSETHQAPGQSMPHISGYRW-ERAYRQETRSEHRGRGSGGVAVLFREDLQP 327
           S TGRD IF           +P  +  +  ++ Y         G    GVAV+  EDL+P
Sbjct: 55  STTGRDAIFIDRKDPKKSLDVPQYAILKIKDKIYALG------GYNDEGVAVILSEDLRP 108

Query: 326 LIHIARRDEQARYMWVRLKAETDRYLYLAICYFSSST 216
           + H   + +    +W   K + DR++ ++I Y+ S T
Sbjct: 109 ICHAKLKHK----LWRAEKYDEDRFVAMSIWYWYSET 141


>tr|B1L7N7|B1L7N7_KORCO Putative uncharacterized protein
           OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_0104
           PE=4 SV=1
          Length = 414

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -2

Query: 362 GVAVLFREDLQPLIHIARRDEQARYMWVRLKAETDRYLYLAICYFSSST 216
           GVAV+  EDL+P+ H   + E    +W   K + DR++ ++I Y+ S T
Sbjct: 86  GVAVILSEDLRPICHAKLKHE----LWRAEKYDEDRFVAMSIWYWYSET 130


>tr|O42110|O42110_9SAUR ORF2 OS=Platemys spixii PE=4 SV=2
          Length = 963

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
 Frame = -2

Query: 392 RSEHRGRGSGGVAVLFREDLQPL-IHIARRDEQARYMWVRLKAETDR-YLYLAICYFSSS 219
           R + +GR  GGVA+  RE      +     D     +WV+L+++ ++  + + +CY    
Sbjct: 97  RKDRQGRKGGGVALYVREHYDXSELQCETGDTPVESLWVKLRSKNNKGDVVVGVCY---- 152

Query: 218 TSVYAPPRGQSPFSILDDDIWEFSRDGDIIILGDFN-------ARTAHHQ 90
                P +           + + S   D+I++GDFN       + TA H+
Sbjct: 153 ---RXPDQEDEVDEAFFSQLGKVSSSQDLILMGDFNHPDICWKSNTAEHK 199