BP921201
Clone id YMU001_000146_H06
Library
Length 392
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000146_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTCACAAGTCACAGCAAGGCTCAGTTGAGGACCACCGGACTCTCTCCTCAACGATGTTAC
GCTGGAAGCTTGGAGACCATATCCTGGTGTGTTCGTGAAGTAAGGACTCATTAAATTAGC
TGGCTCATTGGGGCAGTAGGTCGGAGCAGAGCATCCATTGTTGCCTCTACTACTGCTGGT
GGTGGCTGCCATATCTATCCTGCAAATTCCATAATGAGGTCCAATAATTGCATGATGTTG
GGTATCTCCATTTATATGCTGAGCAACAAGGGAGGGAGTTCTGCTGATTTCCTTGACGGC
ATGGCCGGATGGTGCGGCAGTCGAGCTCGAGCTGCCCAAGCTGAGAGTGGACGAGGAGGA
GCTCTGCTCTTGTTTCTCAAGCTGGGTACTCT
■■Homology search results ■■ -
sp_hit_id Q5RHP9
Definition sp|Q5RHP9|CA173_HUMAN Uncharacterized protein C1orf173 OS=Homo sapiens
Align length 31
Score (bit) 32.3
E-value 0.76
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921201|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_H06.
(392 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5RHP9|CA173_HUMAN Uncharacterized protein C1orf173 OS=Homo s... 32 0.76
sp|Q6ZR54|YN009_HUMAN Putative uncharacterized protein FLJ46641 ... 32 1.3
sp|O00268|TAF4_HUMAN Transcription initiation factor TFIID subun... 30 2.9
sp|Q3SX20|CQ059_BOVIN Uncharacterized protein C17orf59 homolog O... 30 2.9
sp|P0A686|WA22_MYCTU WAG22 antigen OS=Mycobacterium tuberculosis... 30 3.8
sp|P0A687|WA22_MYCBO WAG22 antigen OS=Mycobacterium bovis GN=wag... 30 3.8
sp|Q8JGS1|STIL_DANRE SCL-interrupting locus protein homolog OS=D... 30 4.9
sp|Q9H0E3|SP130_HUMAN Histone deacetylase complex subunit SAP130... 30 4.9
sp|Q5F3U0|SP130_CHICK Histone deacetylase complex subunit SAP130... 30 4.9
sp|B0CCD5|MURB_ACAM1 UDP-N-acetylenolpyruvoylglucosamine reducta... 30 4.9
sp|Q6P253|DMKN_MOUSE Dermokine OS=Mus musculus GN=Dmkn PE=2 SV=2 30 4.9
sp|Q9UPV0|CE164_HUMAN Centrosomal protein of 164 kDa OS=Homo sap... 30 4.9
sp|Q8YEA9|TRMB_BRUME tRNA (guanine-N(7)-)-methyltransferase OS=B... 29 6.4
sp|Q57AA4|TRMB_BRUAB tRNA (guanine-N(7)-)-methyltransferase OS=B... 29 6.4
sp|Q2YQS1|TRMB_BRUA2 tRNA (guanine-N(7)-)-methyltransferase OS=B... 29 6.4
sp|Q6Q3F5|SIDT1_RAT SID1 transmembrane family member 1 OS=Rattus... 29 6.4
sp|O75038|PLCH2_HUMAN 1-phosphatidylinositol-4,5-bisphosphate ph... 29 6.4
sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related pr... 29 6.4
sp|Q8BIH0|SP130_MOUSE Histone deacetylase complex subunit SAP130... 29 8.4
sp|Q05488|MAMA_CLOTT Methylaspartate mutase S chain OS=Clostridi... 29 8.4
sp|Q890S0|MAMA_CLOTE Methylaspartate mutase S chain OS=Clostridi... 29 8.4
sp|Q0CA78|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus... 29 8.4
sp|Q5VTL7|FNDC7_HUMAN Fibronectin type III domain-containing pro... 29 8.4
sp|Q94CD8|E134_ARATH Putative glucan endo-1,3-beta-glucosidase 4... 29 8.4
sp|Q7YU81|CHN_DROME Protein charlatan OS=Drosophila melanogaster... 29 8.4
sp|P78688|AREA_GIBFU Nitrogen regulatory protein areA OS=Gibbere... 29 8.4

>sp|Q5RHP9|CA173_HUMAN Uncharacterized protein C1orf173 OS=Homo
sapiens GN=C1orf173 PE=2 SV=1
Length = 1530

Score = 32.3 bits (72), Expect = 0.76
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3

Query: 105 PYFTNTPGYGLQASSVTSLRRESGGPQLSLA 13
P F TPG+ ++T+LR+E GG +LS A
Sbjct: 1155 PIFEATPGFEKSLENITALRKEGGGERLSEA 1185


>sp|Q6ZR54|YN009_HUMAN Putative uncharacterized protein FLJ46641
OS=Homo sapiens PE=2 SV=1
Length = 194

Score = 31.6 bits (70), Expect = 1.3
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +1

Query: 292 LDGMAGWCGSRARAAQAESGRGG 360
L G AG CG RAR AQ +GRGG
Sbjct: 118 LPGHAGPCGPRARPAQGLAGRGG 140


>sp|O00268|TAF4_HUMAN Transcription initiation factor TFIID subunit
4 OS=Homo sapiens GN=TAF4 PE=1 SV=2
Length = 1085

Score = 30.4 bits (67), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1

Query: 386 PSLRNKSRAPPRPLSAWAARARLPHHPAMPSRKSAELPP 270
P+ + APP P A A AR P HPA P + +PP
Sbjct: 261 PAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPP 299


>sp|Q3SX20|CQ059_BOVIN Uncharacterized protein C17orf59 homolog
OS=Bos taurus PE=2 SV=1
Length = 218

Score = 30.4 bits (67), Expect = 2.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1

Query: 292 LDGMAGWCGSRARAAQAESGRGG 360
LDG++G CG A + AESG GG
Sbjct: 32 LDGLSGACGGPASSGGAESGAGG 54


>sp|P0A686|WA22_MYCTU WAG22 antigen OS=Mycobacterium tuberculosis
GN=wag22 PE=3 SV=1
Length = 914

Score = 30.0 bits (66), Expect = 3.8
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Frame = +1

Query: 118 SWLIGAVGRSRASIVASTTAG-------GGCHIYPANSIMRSNNCMMLGISIYMLSNKGG 276
++LIG+ G A+TT G G I A G++ GG
Sbjct: 607 AFLIGSGGTGGVGGAATTTGGVGGAGGNAGLLIGAAGLGGCGGGAFTAGVTTGGAGGTGG 666

Query: 277 SSADFLDGMAGWCGSRARAAQAESGRGGALLLFLKLGT 390
++ F +G AG G A G GGA L+ GT
Sbjct: 667 AAGLFANGGAGGAGGTGSTAGGAGGAGGAGGLYAHGGT 704


>sp|P0A687|WA22_MYCBO WAG22 antigen OS=Mycobacterium bovis GN=wag22
PE=3 SV=1
Length = 914

Score = 30.0 bits (66), Expect = 3.8
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Frame = +1

Query: 118 SWLIGAVGRSRASIVASTTAG-------GGCHIYPANSIMRSNNCMMLGISIYMLSNKGG 276
++LIG+ G A+TT G G I A G++ GG
Sbjct: 607 AFLIGSGGTGGVGGAATTTGGVGGAGGNAGLLIGAAGLGGCGGGAFTAGVTTGGAGGTGG 666

Query: 277 SSADFLDGMAGWCGSRARAAQAESGRGGALLLFLKLGT 390
++ F +G AG G A G GGA L+ GT
Sbjct: 667 AAGLFANGGAGGAGGTGSTAGGAGGAGGAGGLYAHGGT 704


>sp|Q8JGS1|STIL_DANRE SCL-interrupting locus protein homolog OS=Danio
rerio GN=stil PE=2 SV=2
Length = 1263

Score = 29.6 bits (65), Expect = 4.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -3

Query: 279 TPSLVAQHINGDTQHHAIIGPHYGICRIDMAATTSSSRGNNGCS-APTYCPNEPANLMSP 103
TP + H + P G C+ D + TS R + C + +CP P + SP
Sbjct: 818 TPQETSTHEASSLEWQTETEPKSG-CQND-STVTSRDRSESACHYSEEHCPGSPQHPTSP 875

Query: 102 YFTNTPGYGLQ 70
+ G+G+Q
Sbjct: 876 QHNTSSGFGVQ 886


>sp|Q9H0E3|SP130_HUMAN Histone deacetylase complex subunit SAP130
OS=Homo sapiens GN=SAP130 PE=1 SV=1
Length = 1048

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1

Query: 359 PPRPLSAWAARARLPHHPAMPSRKSAELPPLLLSI*MEIP 240
P PLS + P P MPSR A PP LS+ ++P
Sbjct: 130 PAVPLSFSEGLMKPPPKPTMPSRPIAPAPPSTLSLPPKVP 169


>sp|Q5F3U0|SP130_CHICK Histone deacetylase complex subunit SAP130
OS=Gallus gallus GN=SAP130 PE=2 SV=1
Length = 1057

Score = 29.6 bits (65), Expect = 4.9
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -1

Query: 362 APPRPLSAWAARARLPHHPAMPSRKSAELPPLLLSI*MEIP 240
AP PLS + P P MPSR A PP LS ++P
Sbjct: 104 APAVPLSFSDGLMKPPLKPTMPSRPIAPAPPSTLSAPTKVP 144


>sp|B0CCD5|MURB_ACAM1 UDP-N-acetylenolpyruvoylglucosamine reductase
OS=Acaryochloris marina (strain MBIC 11017) GN=murB PE=3
SV=1
Length = 308

Score = 29.6 bits (65), Expect = 4.9
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +1

Query: 13 SKAQLRTTGLSPQRC----YAG-SLETISWCVREVRTH*ISWLIGAVGRSRASIVASTTA 177
S LR P+ C YAG SL ++W + + W +G G ++V + A
Sbjct: 83 STRYLRQRTFDPETCQVTAYAGESLPKLAWQAAKRGWSGLEWAVGIPGTVGGALVMNAGA 142

Query: 178 GGGC 189
GGC
Sbjct: 143 HGGC 146


tr_hit_id Q1DBJ6
Definition tr|Q1DBJ6|Q1DBJ6_MYXXD Transcriptional regulator, LysR family OS=Myxococcus xanthus (strain DK 1622)
Align length 83
Score (bit) 37.7
E-value 0.29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921201|Adiantum capillus-veneris mRNA, clone:
YMU001_000146_H06.
(392 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1DBJ6|Q1DBJ6_MYXXD Transcriptional regulator, LysR family OS... 38 0.29
tr|B7Q1A2|B7Q1A2_IXOSC Putative uncharacterized protein OS=Ixode... 36 1.1
tr|B5JZB3|B5JZB3_9RHOB Putative uncharacterized protein OS=Octad... 34 4.2
tr|Q4FX38|Q4FX38_LEIMA Putative uncharacterized protein OS=Leish... 34 4.2
tr|B1XWZ2|B1XWZ2_LEPCP Putative uncharacterized protein OS=Lepto... 33 5.4
tr|A7Y2G9|A7Y2G9_PIG Tumor necrosis factor receptor 2 isoform OS... 33 7.1
tr|A7Y2G6|A7Y2G6_PIG Tumor necrosis factor receptor 2 OS=Sus scr... 33 7.1
tr|B6KGY9|B6KGY9_TOXGO Putative uncharacterized protein OS=Toxop... 33 7.1
tr|A6W500|A6W500_KINRD Putative uncharacterized protein OS=Kineo... 33 9.3
tr|A5EQP1|A5EQP1_BRASB Putative uncharacterized protein OS=Brady... 33 9.3
tr|A1YPR7|A1YPR7_PIG Tumor necrosis factor receptor 2 OS=Sus scr... 33 9.3

>tr|Q1DBJ6|Q1DBJ6_MYXXD Transcriptional regulator, LysR family
OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_1726 PE=4
SV=1
Length = 293

Score = 37.7 bits (86), Expect = 0.29
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Frame = +1

Query: 118 SWLIGAVGRSRASIVASTTAGGGCHIYPANSIMRSNNCM----------MLGISIYMLSN 267
+W IG S AS+ A+ +AG G + PA+S+ + + L +++Y SN
Sbjct: 208 AWRIGYSSASLASLCAAVSAGLGVSLLPASSVQAGHRVLGEKDGFPVVDGLELALYARSN 267

Query: 268 KGGSSADFLDGMAGWCGSRARAA 336
G D ++ C RA AA
Sbjct: 268 LGAVGRTLRDELSDLCTQRAEAA 290


>tr|B7Q1A2|B7Q1A2_IXOSC Putative uncharacterized protein OS=Ixodes
scapularis GN=IscW_ISCW008863 PE=4 SV=1
Length = 446

Score = 35.8 bits (81), Expect = 1.1
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Frame = -3

Query: 240 QHHAIIGPHYGICRIDMAATTSSSRGNN------GCSAPTYCPNEPANLMSPYFTNTP-- 85
+ HA++G Y D A + ++ G N G + P+ AN +SP T +
Sbjct: 187 KEHAMVGRVYSF---DAATSLKNAPGQNTRRPLPGYPSVCTAPSSTANSLSPLGTRSAQS 243

Query: 84 ----GYGLQASSVTSLRRESGGPQLSLAVT 7
G G AS+ SL++ +GGP +AVT
Sbjct: 244 PDSGGTGGPASAAASLQQHNGGPMTLVAVT 273


>tr|B5JZB3|B5JZB3_9RHOB Putative uncharacterized protein
OS=Octadecabacter antarcticus 238 GN=OA238_5079 PE=4
SV=1
Length = 455

Score = 33.9 bits (76), Expect = 4.2
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2

Query: 334 QLELDCRTIRPCRQGNQQNSLPCCSAYKWRYPTSCNYWTSLWNLQDRYGSH 182
++EL ++R ++G + +L + Y RYPT WT+L +L G H
Sbjct: 6 RVELRISSVRAHQEGRLREALDGYTRYLERYPTDAGVWTNLGSLYRTMGRH 56


>tr|Q4FX38|Q4FX38_LEIMA Putative uncharacterized protein
OS=Leishmania major strain Friedlin GN=LMJ_1010 PE=4
SV=1
Length = 779

Score = 33.9 bits (76), Expect = 4.2
Identities = 26/81 (32%), Positives = 32/81 (39%)
Frame = -1

Query: 371 KSRAPPRPLSAWAARARLPHHPAMPSRKSAELPPLLLSI*MEIPNIMQLLDLIMEFAG*I 192
K +PPR L A R PH S +A PP+ LS
Sbjct: 114 KHASPPR-LKASQKRFTSPHSSVTTSETAAGQPPVRLS---------------------- 150

Query: 191 WQPPPAVVEATMDALLRPTAP 129
PPP V+E T+D RP+AP
Sbjct: 151 --PPPRVLEETVDKRCRPSAP 169


>tr|B1XWZ2|B1XWZ2_LEPCP Putative uncharacterized protein
OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
SP-6) GN=Lcho_0363 PE=4 SV=1
Length = 372

Score = 33.5 bits (75), Expect = 5.4
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -2

Query: 370 RAELLLVHSQLGQLELDCRTIRPCRQGNQQNSLPCCSAYKWRYPTSCNYWTSL 212
RAE +VH++LG+LEL R + R ++ + P +A+ W +Y+ +L
Sbjct: 25 RAERAVVHARLGELELARREVAILRGLSETQTSPALNAWLWLAEGLADYYENL 77


>tr|A7Y2G9|A7Y2G9_PIG Tumor necrosis factor receptor 2 isoform
OS=Sus scrofa GN=TNFR2 PE=2 SV=1
Length = 411

Score = 33.1 bits (74), Expect = 7.1
Identities = 25/96 (26%), Positives = 39/96 (40%)
Frame = -3

Query: 291 EISRTPSLVAQHINGDTQHHAIIGPHYGICRIDMAATTSSSRGNNGCSAPTYCPNEPANL 112
++ P+ A+ + G Q H + A ++SSS + SAP P+ L
Sbjct: 249 KVPHLPAKKARSVPGPEQQHLLT----------TAPSSSSSSLESSASAPDRRAPTPSQL 298

Query: 111 MSPYFTNTPGYGLQASSVTSLRRESGGPQLSLAVTC 4
+P T G G +S +S SG + VTC
Sbjct: 299 QAPGADKTSGSGEARASSSSSESSSGSHGTQVNVTC 334


>tr|A7Y2G6|A7Y2G6_PIG Tumor necrosis factor receptor 2 OS=Sus scrofa
GN=TNFR2 PE=2 SV=1
Length = 461

Score = 33.1 bits (74), Expect = 7.1
Identities = 25/96 (26%), Positives = 39/96 (40%)
Frame = -3

Query: 291 EISRTPSLVAQHINGDTQHHAIIGPHYGICRIDMAATTSSSRGNNGCSAPTYCPNEPANL 112
++ P+ A+ + G Q H + A ++SSS + SAP P+ L
Sbjct: 299 KVPHLPAKKARSVPGPEQQHLLT----------TAPSSSSSSLESSASAPDRRAPTPSQL 348

Query: 111 MSPYFTNTPGYGLQASSVTSLRRESGGPQLSLAVTC 4
+P T G G +S +S SG + VTC
Sbjct: 349 QAPGADKTSGSGEARASSSSSESSSGSHGTQVNVTC 384


>tr|B6KGY9|B6KGY9_TOXGO Putative uncharacterized protein OS=Toxoplasma
gondii ME49 GN=TGME49_047450 PE=4 SV=1
Length = 2303

Score = 33.1 bits (74), Expect = 7.1
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +1

Query: 241 GISIYMLSNKGGSSADFLDGMAGWCGSRARAAQAESGRGG 360
GISI L+ +GGSS D++DG G R R+ S R G
Sbjct: 924 GISI-RLAGRGGSSRDYMDGRGPGSGGRGRSPSPHSRRRG 962


>tr|A6W500|A6W500_KINRD Putative uncharacterized protein
OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM
14245 / SRS30216) GN=Krad_0399 PE=4 SV=1
Length = 157

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3

Query: 234 HAIIGP--HYGICRIDMAATTSSSRGNNGCSAPTYCPNEPANLMSPYFTNTP 85
H + GP +G+ + AA T S +G + P P E LMS YF TP
Sbjct: 12 HRLPGPDLRHGVVAVRRAAATLRSAPRSGRAYPRRVPFERLRLMSDYFAPTP 63


>tr|A5EQP1|A5EQP1_BRASB Putative uncharacterized protein
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=BBta_6581 PE=4 SV=1
Length = 466

Score = 32.7 bits (73), Expect = 9.3
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +1

Query: 151 ASIVASTTAGGGCHIYPANSIMRSNNCMMLGISIYMLSNKGGSSADFLDGMAGWCGSRAR 330
A++ +T AG G ++Y + +NC++ G+++ +S SA DG G
Sbjct: 248 AALSCATMAGSG-YVYWVGNHANPSNCVVTGVNVTAISITNCGSAHQFDGFTVTAGGTFA 306

Query: 331 AAQAESGRGG 360
+ A+ G G
Sbjct: 307 GSGAQDGMNG 316