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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921206
Clone id YMU001_000147_A01
Library
Length 397
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATACTAACAAAGATCACAATGTGCAATGTGTTTCAGATAAAAAACATTGTAGGCCATTA
TTGCACATGTATATTAAGCATCATTACTAAAAGTCGTTGTTGGTATGTTGTAATCATGCC
AGCACCCCACATCCGAATTCTTTAGCAAGGCCTGGTAGATGGGTCTGTGGCAATGTCAAA
ATCCACCGCCTTTTTGATAAAGAGAAATATCTACACCTGCTAAGGGGCATAGGCCCTCTC
TGAAAATATATCTTCCCGTTGGCAGCCTGAAGCTCAGCCAAATTCCTTTCGGCATGCACG
TGTTGTGAAAGAACATCGTAGATGGTGTGGCAATGAGCTGCTTGCTTTCGCACATCCTTC
AGTGAAAGGTGGATTCCACCTAAGGATGGCTTCCCAC
■■Homology search results ■■ -
sp_hit_id Q8R455
Definition sp|Q8R455|TRPM8_RAT Transient receptor potential cation channel subfamily M member 8 OS=Rattus norvegicus
Align length 68
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921206|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A01.
         (397 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R455|TRPM8_RAT Transient receptor potential cation channel ...    30   2.9  
sp|Q8R4D5|TRPM8_MOUSE Transient receptor potential cation channe...    30   2.9  
sp|P16225|SPAI_PIG Sodium/potassium ATPase inhibitor SPAI-2 OS=S...    29   6.4  
sp|Q54QZ5|TREA_DICDI Trehalase OS=Dictyostelium discoideum GN=tr...    29   8.3  

>sp|Q8R455|TRPM8_RAT Transient receptor potential cation channel
           subfamily M member 8 OS=Rattus norvegicus GN=Trpm8 PE=2
           SV=4
          Length = 1104

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 326 TIYDVLSQHVHAERNLAELQAANGKIYFQRGPMP---LSRCRYFSLSKRRWILTLPQTHL 156
           T+Y++L+QH H +     +    G   F   P      SR  Y + SK  WILT   TH 
Sbjct: 128 TLYELLTQHWHLKTPNLVISVTGGAKNFALKPRMRKIFSRLIYIAQSKGAWILT-GGTHY 186

Query: 155 PGLAKEFG 132
            GL K  G
Sbjct: 187 -GLMKYIG 193


>sp|Q8R4D5|TRPM8_MOUSE Transient receptor potential cation channel
           subfamily M member 8 OS=Mus musculus GN=Trpm8 PE=2 SV=1
          Length = 1104

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 326 TIYDVLSQHVHAERNLAELQAANGKIYFQRGPMP---LSRCRYFSLSKRRWILTLPQTHL 156
           T+Y++L+QH H +     +    G   F   P      SR  Y + SK  WILT   TH 
Sbjct: 128 TLYELLTQHWHLKTPNLVISVTGGAKNFALKPRMRKIFSRLIYIAQSKGAWILT-GGTHY 186

Query: 155 PGLAKEFG 132
            GL K  G
Sbjct: 187 -GLMKYIG 193


>sp|P16225|SPAI_PIG Sodium/potassium ATPase inhibitor SPAI-2 OS=Sus
           scrofa PE=1 SV=2
          Length = 187

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 175 HCHRPIYQALLKNSDVGCWHDYNIP 101
           HC R +++  L N    CW DY+ P
Sbjct: 145 HCPRILFRCPLSNPSNKCWRDYDCP 169


>sp|Q54QZ5|TREA_DICDI Trehalase OS=Dictyostelium discoideum GN=treh
           PE=3 SV=1
          Length = 594

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 154 QALLKNSDVGCWHDYNIPTTTFSNDA*YTCAIM 56
           Q +  N D   W+DYN+ T+T +N+A YT  I+
Sbjct: 414 QQVFFNEDTYQWNDYNLKTST-NNEAWYTSNIL 445
tr_hit_id B3NRR9
Definition tr|B3NRR9|B3NRR9_DROER GG20352 OS=Drosophila erecta
Align length 62
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921206|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A01.
         (397 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3NRR9|B3NRR9_DROER GG20352 OS=Drosophila erecta GN=GG20352 P...    33   5.4  
tr|B4P4V4|B4P4V4_DROYA GE12512 OS=Drosophila yakuba GN=GE12512 P...    33   7.1  

>tr|B3NRR9|B3NRR9_DROER GG20352 OS=Drosophila erecta GN=GG20352 PE=4
           SV=1
          Length = 195

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -3

Query: 299 VHAERNLAELQAANGKIYFQRGPMPLSRCRYFSLSKRRWI-----LTLPQTHLPGLAKEF 135
           +HAE+ L  L  A+ K +  R  + L R R F  SKRR+I       L +  +  LA E 
Sbjct: 65  LHAEQTLGPLDCADLKEHTLRADVILRRLRRFLASKRRFIDFSPMSVLQEAIVQHLAAEM 124

Query: 134 GC 129
           GC
Sbjct: 125 GC 126


>tr|B4P4V4|B4P4V4_DROYA GE12512 OS=Drosophila yakuba GN=GE12512 PE=4
           SV=1
          Length = 211

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = -3

Query: 311 LSQHVHAERNLAELQAANGKIYFQRGPMPLSRCRYFSLSKRRWILTLPQTHL 156
           L   +HAE+NL  L  A+ K +  R  + L R R F  SKRR+I   P + L
Sbjct: 54  LVSSLHAEKNLGPLDFADLKEHVLRADVILRRLRRFLASKRRFIDFRPMSVL 105