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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921207
Clone id YMU001_000147_A02
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCCAAGCTCCCCATCATCATCATCCACATCTTCCTCATCATCATCATCATCATCAGATC
TAAGTTACCTAGAGCCGGAGCAGCCTGAGCAGTGGGAACAATTCTACCAAAGGCAATTAC
CTCCTCGCACAGCCCTGGCGGTGCTGCGCGCTACATGTATGGCGGAATTGATGAGCAACC
CAAAAGACAGCTATGTCCTCATATCGATGAAGATCGTCACACAATCAAGGCTTATCTTGG
CCATAAGCCGCCATGGGACTGCATAAGAGTTTCAATGTACTGGTTGGTTATCGACATATT
TTTTCCTCACACAAGGTAGCCTCATCATGTGGCTCGCTACGTTGCAAGTCAGTAGGGATC
TCTGCTTTTGATGTAGCCGTTGTAGCCGCTCTCCTGTTCAACGCATTAGTTGGTATTTGT
ACTGTCTTGAAGTG
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921207|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A02.
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id B2UNW9
Definition tr|B2UNW9|B2UNW9_AKKM8 TDP-4-keto-6-deoxy-D-glucose transaminase OS=Akkermansia muciniphila (strain ATCC BAA-835)
Align length 56
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921207|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A02.
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2UNW9|B2UNW9_AKKM8 TDP-4-keto-6-deoxy-D-glucose transaminase...    33   7.1  
tr|A5L451|A5L451_9GAMM PhnJ protein OS=Vibrionales bacterium SWA...    33   9.3  

>tr|B2UNW9|B2UNW9_AKKM8 TDP-4-keto-6-deoxy-D-glucose transaminase
           OS=Akkermansia muciniphila (strain ATCC BAA-835)
           GN=Amuc_0501 PE=4 SV=1
          Length = 379

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 90  QWEQFYQRQLPPRTALAVLRATCMAELMSNPKDSYVLISMKIVTQSRLILAISRHG 257
           +W   Y R L P     VLR  C+ E  ++    Y ++   +  ++RLI  ++ HG
Sbjct: 259 KWWDMYHRALAPLEEQGVLRRPCIPEHCTHNAHMYYVLLRSMEERTRLINKLAEHG 314


>tr|A5L451|A5L451_9GAMM PhnJ protein OS=Vibrionales bacterium SWAT-3
           GN=VSWAT3_16910 PE=4 SV=1
          Length = 306

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 122 SSHSPGGAARYMYGGIDEQPKRQL 193
           +SHSP GA  Y YG +DEQ KR +
Sbjct: 23  ASHSPVGATGYNYGYLDEQTKRMI 46