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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921214
Clone id YMU001_000147_A11
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACTGGAAGTAGTGGTGCTACATCATGCTCTCCATCAATGTAGTCCCAATAACCTTTGCC
CATAAAGAAATTCGTCACTTGGAACTTCCAAGCATGGAAGTTGTTCTTGTCCAGCTTCTC
ATTGACAACCTAGTTAAGCCCATCATTGTCTGACAACATGTTGCCAACCCTTCACTCATT
CTTCAATCAACCTGCTTAAAAGTAGTCAGTTACCACCTGTAACCACAATCTGTATACATA
CACATGTTCCACTTTACTAAACAGTTTTTGTGCATATTGTATCCAAACCAAATCTTTCTG
CACCACCTATATGTAGATCTGGAAAATCCCAACCTTAGCATTTATGCATGCAAACGCACC
CTAACTCCAAAACTAGGGGCCAAAACGTGCCCAAATTGGAAATCTTGATGCACAGTCGCA
GTCCAAAGGATTACATAGAACCCTGAGATGCACACTCTCCAAGTAGAATCACCTCAACTG
GAGA
■■Homology search results ■■ -
sp_hit_id Q6ZWJ8
Definition sp|Q6ZWJ8|CRIM2_HUMAN Cysteine-rich motor neuron 2 protein OS=Homo sapiens
Align length 81
Score (bit) 34.7
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921214|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A11.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZWJ8|CRIM2_HUMAN Cysteine-rich motor neuron 2 protein OS=Ho...    35   0.23 
sp|Q9ULZ9|MMP17_HUMAN Matrix metalloproteinase-17 OS=Homo sapien...    32   1.2  
sp|Q3U492|CRIM2_MOUSE Cysteine-rich motor neuron 2 protein OS=Mu...    32   1.5  
sp|Q9R0S3|MMP17_MOUSE Matrix metalloproteinase-17 OS=Mus musculu...    31   3.4  
sp|Q9DUC4|CAPSD_TTVV9 Capsid protein OS=Torque teno virus (isola...    30   4.4  
sp|A5DAD0|PAN2_PICGU PAB-dependent poly(A)-specific ribonuclease...    30   7.5  
sp|Q8WXC7|YB054_HUMAN Putative uncharacterized protein LOC643905...    30   7.5  
sp|P89495|YB109_YEAST Putative uncharacterized protein YBL109W O...    29   9.8  

>sp|Q6ZWJ8|CRIM2_HUMAN Cysteine-rich motor neuron 2 protein OS=Homo
            sapiens GN=CRIM2 PE=2 SV=2
          Length = 1503

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
 Frame = +3

Query: 108  CPASH*QPS*AHHCLTTCCQPFTHSSINLLKSSQLPP----------VTTICIHTHVPLY 257
            CP S   P    HC  TC +  ++ S  LL S   PP          +T +CIH   P  
Sbjct: 1002 CPPSQLLPPGPQHCCPTCAEALSNCSEGLLGSELAPPDPCYTCQCQDLTWLCIHQACPEL 1061

Query: 258  *TVFVHIVSKPNLSAPPICRS 320
                    + P  S  P+CR+
Sbjct: 1062 SCPLSERHTPPG-SCCPVCRA 1081


>sp|Q9ULZ9|MMP17_HUMAN Matrix metalloproteinase-17 OS=Homo sapiens
           GN=MMP17 PE=1 SV=3
          Length = 606

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 90  WKFQVTNFFMGKGYWDYIDGEHDVAPLLP 4
           W    + FF G+ YW  +DGE +VAP  P
Sbjct: 488 WSDGASYFFRGQEYWKVLDGELEVAPGYP 516


>sp|Q3U492|CRIM2_MOUSE Cysteine-rich motor neuron 2 protein OS=Mus
            musculus GN=Crim2 PE=1 SV=1
          Length = 1550

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
 Frame = +3

Query: 108  CPASH*QPS*AHHCLTTCCQPFTHSSINLLKSSQLPP----------VTTICIHTHVP 251
            CP S   P    HC  TC Q  ++ + +L+ S  +PP          +T +C H   P
Sbjct: 1066 CPPSQLLPPGPQHCCPTCAQALSNCTEDLVGSELVPPDPCYTCQCQDLTWLCTHRACP 1123


>sp|Q9R0S3|MMP17_MOUSE Matrix metalloproteinase-17 OS=Mus musculus
           GN=Mmp17 PE=1 SV=2
          Length = 578

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 90  WKFQVTNFFMGKGYWDYIDGEHDVAPLLP 4
           W    + FF G+ YW  +DGE + AP  P
Sbjct: 489 WSDGASYFFRGQEYWKVLDGELEAAPGYP 517


>sp|Q9DUC4|CAPSD_TTVV9 Capsid protein OS=Torque teno virus (isolate
           Japanese macaque/Japan/Mf-TTV9/2000) GN=ORF1 PE=3 SV=1
          Length = 723

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
 Frame = +1

Query: 79  LELPSMEVVLVQLLIDNLVKPIIV*QHVANPSLILQSTCLKVVSYHL*PQSVYIHMFHFT 258
           LE P MEV L   ++ + +K I+  +HV  PSL+ +    + +   + P  + +  ++F 
Sbjct: 175 LETP-MEVGLESHMLAHPLKMIMSSKHVTVPSLLTKKGGRRYLRLKIPPPKLMMTQWYFQ 233

Query: 259 KQF----LCILYPNQIFLHHLYVD--LENPNLSIYA 348
           K+F    L +L  +   L H ++   + +P L+IYA
Sbjct: 234 KEFCQVGLVLLSISTATLMHPWMAPFVNSPALTIYA 269


>sp|A5DAD0|PAN2_PICGU PAB-dependent poly(A)-specific ribonuclease
           subunit PAN2 OS=Pichia guilliermondii GN=PAN2 PE=3 SV=3
          Length = 1098

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 349 MHKC*GWDFPDLHIGGAERF 290
           +H C GW  P+ HIG  ERF
Sbjct: 745 IHNCRGWLVPEFHIGEDERF 764


>sp|Q8WXC7|YB054_HUMAN Putative uncharacterized protein LOC643905
           OS=Homo sapiens PE=5 SV=1
          Length = 389

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +3

Query: 165 QPFTHSSINLLKSSQLPPVTTICIHTH----VPLY*TVFVHIVSKPNLSAPPICRSGKSQ 332
           +PF H+S         P     C+ TH    +PL+   FVH  S  +L   P   +  S+
Sbjct: 291 RPFVHASS--------PTALRPCLFTHGPSSMPLHPRPFVHASSSTSLHPRPFIHASSSK 342

Query: 333 P*HLCMQTH 359
             HL + +H
Sbjct: 343 SLHLRLFSH 351


>sp|P89495|YB109_YEAST Putative uncharacterized protein YBL109W
           OS=Saccharomyces cerevisiae GN=YBL109W PE=5 SV=2
          Length = 112

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 150 LTTCCQPFTHSSINLLKSSQLPPVTTICIHTHVPLY*TVFVHIVSKPNLSAPP 308
           L T   P T+   + +  ++ PP++ I +H H+P + +   H++    L  PP
Sbjct: 59  LPTTIHPSTYYHQSTVHHNRYPPISHIQLHYHLPCHYSTIHHLLLTILLFYPP 111
tr_hit_id A5BT01
Definition tr|A5BT01|A5BT01_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 36
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921214|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A11.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BT01|A5BT01_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A5C393|A5C393_VITVI Putative uncharacterized protein OS=Vitis...    37   0.37 
tr|A5BV67|A5BV67_VITVI Putative uncharacterized protein OS=Vitis...    37   0.48 
tr|A5C715|A5C715_VITVI Putative uncharacterized protein OS=Vitis...    36   0.82 
tr|A5BFR8|A5BFR8_VITVI Putative uncharacterized protein OS=Vitis...    36   0.82 
tr|A5BP50|A5BP50_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5BNC6|A5BNC6_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5B979|A5B979_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5B1U5|A5B1U5_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5AYB0|A5AYB0_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5AQ25|A5AQ25_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5B195|A5B195_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|Q710T7|Q710T7_POPDE Gag-pol polyprotein OS=Populus deltoides ...    35   1.8  
tr|A5C054|A5C054_VITVI Putative uncharacterized protein OS=Vitis...    35   1.8  
tr|A5BMU9|A5BMU9_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|A9RIB3|A9RIB3_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.1  
tr|A5BQA9|A5BQA9_VITVI Putative uncharacterized protein OS=Vitis...    34   3.1  
tr|A5BQ73|A5BQ73_VITVI Putative uncharacterized protein OS=Vitis...    34   3.1  
tr|A5BJ70|A5BJ70_VITVI Putative uncharacterized protein OS=Vitis...    34   3.1  
tr|A5BDZ8|A5BDZ8_VITVI Putative uncharacterized protein OS=Vitis...    34   3.1  
tr|A5C001|A5C001_VITVI Putative uncharacterized protein OS=Vitis...    34   4.1  
tr|A5BZ51|A5BZ51_VITVI Putative uncharacterized protein OS=Vitis...    34   4.1  
tr|A5B6P6|A5B6P6_VITVI Putative uncharacterized protein OS=Vitis...    34   4.1  
tr|A5B1N8|A5B1N8_VITVI Putative uncharacterized protein OS=Vitis...    34   4.1  
tr|Q6FVT6|Q6FVT6_CANGA Similar to uniprot|Q07798 Saccharomyces c...    34   4.1  
tr|A5BSK1|A5BSK1_VITVI Putative uncharacterized protein OS=Vitis...    33   5.3  
tr|A5BM97|A5BM97_VITVI Putative uncharacterized protein OS=Vitis...    33   5.3  
tr|A5BJM5|A5BJM5_VITVI Putative uncharacterized protein OS=Vitis...    33   5.3  
tr|A5C9B0|A5C9B0_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  
tr|A5AXC5|A5AXC5_VITVI Putative uncharacterized protein OS=Vitis...    33   7.0  

>tr|A5BT01|A5BT01_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020396 PE=4 SV=1
          Length = 621

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDG 31
           LN  +  KLD+NN+  WK Q+ N     G+ DYIDG
Sbjct: 506 LNHTLPIKLDRNNYILWKTQMENVIFANGFEDYIDG 541


>tr|A5C393|A5C393_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041425 PE=4 SV=1
          Length = 1047

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDGEHDVAP 13
           LN  +  KLD+NN+  WK Q+ N     G+ +YIDG     P
Sbjct: 25  LNHALPIKLDRNNYILWKTQMENVVYANGFEEYIDGTKPCPP 66


>tr|A5BV67|A5BV67_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004514 PE=4 SV=1
          Length = 215

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -2

Query: 156 LSDNDGLN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDGEHDV 19
           ++ N+G N +V  + +  N+ AW+FQ   F  GK  W +IDG+  V
Sbjct: 11  IASNNGENTIV--RFNGKNYLAWEFQYKMFMKGKELWSHIDGKSKV 54


>tr|A5C715|A5C715_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022326 PE=4 SV=1
          Length = 1508

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDGEHDVAP 13
           LN  +  KLD NN+  WK Q+ N     G+ +YIDG     P
Sbjct: 256 LNHALPIKLDXNNYILWKTQMENVVYANGFEEYIDGTKPCPP 297


>tr|A5BFR8|A5BFR8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012106 PE=4 SV=1
          Length = 1432

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDG-----EHDVAP 13
           LN  +  KLD+ N+  W+ Q+ N     G+ D+IDG     E D++P
Sbjct: 32  LNHTLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSICPEKDLSP 78


>tr|A5BP50|A5BP50_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004343 PE=4 SV=1
          Length = 1334

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDGEHDVAP 13
           LN  +  KLD++N+  WK Q+ N     G+ DYI+G     P
Sbjct: 26  LNHALPIKLDRSNYILWKTQMENVVYANGFEDYIEGTKSCPP 67


>tr|A5BNC6|A5BNC6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030301 PE=4 SV=1
          Length = 1272

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDGEHDVAP 13
           LN  +  KLD++N+  WK Q+ N     G+ DYI+G     P
Sbjct: 26  LNHALPIKLDRSNYILWKTQMENVVYANGFEDYIEGTKSCPP 67


>tr|A5B979|A5B979_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009554 PE=4 SV=1
          Length = 1282

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDG 31
           LN  +  KLD+ N+  WK Q+ N     G+ D+IDG
Sbjct: 29  LNHTLPVKLDRTNYILWKSQIDNVVFANGFEDFIDG 64


>tr|A5B1U5|A5B1U5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005976 PE=4 SV=1
          Length = 1380

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDG-----EHDVAP 13
           LN  +  KLD+ N+  W+ Q+ N     G+ D+IDG     E D++P
Sbjct: 32  LNHTLPVKLDRTNYILWRSQIDNVVFANGFEDFIDGTSICPEKDLSP 78


>tr|A5AYB0|A5AYB0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041509 PE=4 SV=1
          Length = 1434

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 138 LN*VVNEKLDKNNFHAWKFQVTNFFMGKGYWDYIDGEHDVAP 13
           LN  +  KLD++N+  WK Q+ N     G+ DYI+G     P
Sbjct: 26  LNHALPIKLDRSNYILWKTQMENVVYANGFEDYIEGTKSCPP 67