BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921215|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A12.
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1CS06|NPL4_ASPCL Nuclear protein localization protein 4 OS=A...    34   0.35 
sp|Q61818|RAI1_MOUSE Retinoic acid-induced protein 1 OS=Mus musc...    32   1.8  
sp|Q5P4Z2|QUEC_AZOSE Queuosine biosynthesis protein queC OS=Azoa...    31   2.3  
sp|Q38PR3|NU4M_MAMPR NADH-ubiquinone oxidoreductase chain 4 OS=M...    31   3.0  
sp|A1D4X8|NPL4_NEOFI Nuclear protein localization protein 4 OS=N...    31   3.0  
sp|O54968|NF2L2_RAT Nuclear factor erythroid 2-related factor 2 ...    30   3.9  
sp|A0JPI9|CN16B_RAT Uncharacterized protein C14orf166B homolog O...    30   3.9  
sp|P27382|VP11_BPPRD Infectivity protein P11 OS=Enterobacteria p...    30   5.2  
sp|A0LV27|IF2_ACIC1 Translation initiation factor IF-2 OS=Acidot...    30   5.2  
sp|Q8CJH3|PLXB1_MOUSE Plexin-B1 OS=Mus musculus GN=Plxnb1 PE=1 SV=1    30   6.7  
sp|Q2I3G5|NU4M_ELEMA NADH-ubiquinone oxidoreductase chain 4 OS=E...    30   6.7  
sp|Q6Z9R8|HFB4A_ORYSJ Putative heat stress transcription factor ...    30   6.7  
sp|P17600|SYN1_HUMAN Synapsin-1 OS=Homo sapiens GN=SYN1 PE=1 SV=3      29   8.7  
sp|Q1LJY1|QUEC_RALME Queuosine biosynthesis protein queC OS=Rals...    29   8.7  
sp|Q474K5|QUEC_RALEJ Queuosine biosynthesis protein queC OS=Rals...    29   8.7  
sp|Q0K7W8|QUEC_RALEH Queuosine biosynthesis protein queC OS=Rals...    29   8.7  
sp|A4XRT0|QUEC_PSEMY Queuosine biosynthesis protein queC OS=Pseu...    29   8.7  
sp|Q9GLL9|PROP1_PIG Homeobox protein prophet of Pit-1 OS=Sus scr...    29   8.7  
sp|P39113|CAT8_YEAST Regulatory protein CAT8 OS=Saccharomyces ce...    29   8.7  
sp|Q12774|ARHG5_HUMAN Rho guanine nucleotide exchange factor 5 O...    29   8.7  
sp|Q9R0M4|PODXL_MOUSE Podocalyxin-like protein 1 OS=Mus musculus...    29   8.9  

>sp|A1CS06|NPL4_ASPCL Nuclear protein localization protein 4
           OS=Aspergillus clavatus GN=npl4 PE=3 SV=1
          Length = 674

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 204 TETLTLRPPAGTTATTKIPWAISFPQGHLLHIPVDDTL 317
           TET+T RPP  ++AT K PW +      +   P+DD L
Sbjct: 118 TETVTFRPPTSSSATVKNPWEV------VQQSPLDDKL 149


>sp|Q61818|RAI1_MOUSE Retinoic acid-induced protein 1 OS=Mus musculus
            GN=Rai1 PE=1 SV=2
          Length = 1889

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
 Frame = +3

Query: 159  PKPGHTPGLCSSASSTETLTLRPPAGTTATTKIPWAISFPQGHLLH----IPVDDTLYL- 323
            PKP   P   +++SST + +L  PAG + TT       FP G +L     +P+  T++L 
Sbjct: 1590 PKPHWKPSSSAASSSTSSSSLE-PAGASLTT-------FPGGSVLQQRPSLPLSSTMHLG 1641

Query: 324  --------SSCLVLLAAIRQSPLN 371
                    +SCLV    + Q+P N
Sbjct: 1642 PVVSKALSTSCLV--CCLCQNPAN 1663


>sp|Q5P4Z2|QUEC_AZOSE Queuosine biosynthesis protein queC
           OS=Azoarcus sp. (strain EbN1) GN=queC PE=3 SV=1
          Length = 226

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 139 ESAKGCSTSDSCRLRSCGLQMSGLP 65
           E+ + C   D+CRLR  G + +G+P
Sbjct: 196 EAGRACGVCDACRLRKAGFEAAGIP 220


>sp|Q38PR3|NU4M_MAMPR NADH-ubiquinone oxidoreductase chain 4
           OS=Mammuthus primigenius GN=MT-ND4 PE=3 SV=1
          Length = 455

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 17/68 (25%)
 Frame = +3

Query: 246 TTKIPWAISFPQGHLLHIPVDDTLYLSS-----------------CLVLLAAIRQSPLND 374
           TT   +AIS    HLLH P+D++L LS                   L L+    QS L+ 
Sbjct: 27  TTLYSFAISLTSLHLLHQPLDNSLNLSPEFFLDSLSTPLLILTIWLLPLMLIASQSHLSS 86

Query: 375 GSTYNSPS 398
           GST+   S
Sbjct: 87  GSTFQKKS 94


>sp|A1D4X8|NPL4_NEOFI Nuclear protein localization protein 4
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=npl4 PE=3 SV=1
          Length = 652

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 204 TETLTLRPPAGTTATTKIPWAISFPQGHLLHIPVDDTL 317
           TET+T  PP   +AT K PW +      +   P+DD L
Sbjct: 118 TETVTFHPPTSPSATIKNPWEV------VQQSPLDDML 149


>sp|O54968|NF2L2_RAT Nuclear factor erythroid 2-related factor 2
           OS=Rattus norvegicus GN=Nfe2l2 PE=1 SV=2
          Length = 604

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 264 AISFPQGHLLHIPVDDTLYLSSCLVLLAAIRQSPLNDGSTYNSPSLPDLS-NKPCQPVAL 440
           ++S+ Q  + HIP  D LY   C+ LLA     P  D    +SP+   L+ + P    + 
Sbjct: 99  SVSYSQ--VAHIPKQDALYFEDCMQLLA--ETFPFVDDHEVSSPTFQSLALDIPSHVESS 154

Query: 441 LFLTHERA 464
           +F T ++A
Sbjct: 155 VFTTPDQA 162


>sp|A0JPI9|CN16B_RAT Uncharacterized protein C14orf166B homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 479

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +3

Query: 297 IPVDDTLYLSSCLVLLAAIRQSPLNDGSTYNSPSLPDLSNKPCQPVALLFL 449
           + + DTL L+SCLV +   R    N+G++  S     L N  C  V  LFL
Sbjct: 277 LALGDTLKLNSCLVYVDVSRNGITNEGASRISKG---LENNECLQVLKLFL 324


>sp|P27382|VP11_BPPRD Infectivity protein P11 OS=Enterobacteria
           phage PRD1 GN=XI PE=1 SV=2
          Length = 207

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = -1

Query: 204 LKRLKSIAQEYDRALVARLGGLKVPKAAAQVI---AVGSGAAGCRCRG----YPR*GTGC 46
           ++++K+   +Y   +VA +GGL    AA  ++     GSG  G    G    Y + G+G 
Sbjct: 1   MEKVKAWLIKYKWWIVAAIGGL----AAFLLLKNRGGGSGGGGEYMVGSGPVYQQAGSGA 56

Query: 45  EDETVAVAALQAGGQ 1
            D T+A+AALQA  Q
Sbjct: 57  VDNTMALAALQANTQ 71


>sp|A0LV27|IF2_ACIC1 Translation initiation factor IF-2
           OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
           GN=infB PE=3 SV=1
          Length = 879

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 207 PLKRLKSIAQEYDRALVARLGGLKVPKAAAQVIAVGSGAA 88
           P K  K   QE+D      +GG+++P+   QV+ +  GA+
Sbjct: 253 PHKSKKQRRQEFDNLQAPVIGGIQIPRGNGQVVRLPRGAS 292


>sp|Q8CJH3|PLXB1_MOUSE Plexin-B1 OS=Mus musculus GN=Plxnb1 PE=1 SV=1
          Length = 2119

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
 Frame = +3

Query: 231 AGTTATTKIPWAISFPQG--HLLHI---PVDDTLY---------LSSCLVLLAAIRQSPL 368
           AG   T + P   +F     HLLH+   P   TLY         LS  L L A +   P+
Sbjct: 14  AGCVVTLRSPLPAAFTANGTHLLHLARDPTTGTLYVGATNFLFQLSPGLQLEAVVSTGPV 73

Query: 369 NDGSTYNSPSLPD 407
           ND      P +PD
Sbjct: 74  NDSRDCLPPVIPD 86

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921215|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_A12.
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3XYS2|Q3XYS2_ENTFC Putative uncharacterized protein OS=Enter...    37   0.63 
tr|A3X150|A3X150_9BRAD NADH dehydrogenase subunit L OS=Nitrobact...    36   0.83 
tr|Q3SRF5|Q3SRF5_NITWN NADH-plastoquinone oxidoreductase, chain ...    35   1.8  
tr|B2Z458|B2Z458_VITVI GAGA-binding transcriptional activator BB...    35   1.8  
tr|B6KHE2|B6KHE2_TOXGO Putative uncharacterized protein OS=Toxop...    35   1.8  
tr|A8N4N6|A8N4N6_COPC7 Putative uncharacterized protein OS=Copri...    35   2.4  
tr|B7X520|B7X520_COMTE Transcriptional regulator, GntR family OS...    35   2.5  
tr|Q5Y249|Q5Y249_CRYGA ZNF1p OS=Cryptococcus gattii GN=ZNF1 PE=4...    34   3.1  
tr|A9U2Z6|A9U2Z6_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|B2IAX4|B2IAX4_BEII9 Putative uncharacterized protein OS=Beije...    33   5.4  
tr|Q2L359|Q2L359_MALDO Putative CC-NBS-LRR resistance protein OS...    33   5.4  
tr|A5E0K6|A5E0K6_LODEL Putative uncharacterized protein OS=Lodde...    33   5.4  
tr|Q1D7W8|Q1D7W8_MYXXD Putative lipoprotein OS=Myxococcus xanthu...    33   7.0  
tr|A9F9W0|A9F9W0_9RHOB Glutathione S-transferase family protein ...    33   7.0  
tr|Q4QFU2|Q4QFU2_LEIMA Putative uncharacterized protein OS=Leish...    33   7.0  
tr|A1CZ59|A1CZ59_NEOFI Golgi to endosome transport protein (Ent3...    27   7.1  
tr|A4HMM0|A4HMM0_LEIBR Putative uncharacterized protein OS=Leish...    33   7.2  
tr|Q605I4|Q605I4_METCA Precorrin-4 C11-methyltransferase OS=Meth...    33   9.1  
tr|A9G5E8|A9G5E8_9RHOB Putative uncharacterized protein OS=Phaeo...    33   9.1  
tr|B6KRE4|B6KRE4_TOXGO 4-diphosphocytidyl-2-C-methyl-D-erythrito...    33   9.1  
tr|Q5B4E8|Q5B4E8_EMENI Putative uncharacterized protein OS=Emeri...    33   9.1  
tr|A2R9K9|A2R9K9_ASPNC Similarity to protease type 2 Iga1 -Haemo...    33   9.1  
tr|A9GJ33|A9GJ33_SORC5 Polyketide synthase OS=Sorangium cellulos...    33   9.4  
tr|B3LWF1|B3LWF1_DROAN GF18652 OS=Drosophila ananassae GN=GF1865...    33   9.4  

>tr|Q3XYS2|Q3XYS2_ENTFC Putative uncharacterized protein
           OS=Enterococcus faecium DO GN=EfaeDRAFT_0593 PE=4 SV=1
          Length = 372

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
 Frame = +3

Query: 207 ETLTLRPPAGTTATTKIPWAISFPQG--HLLHIPVDDTLYLSSCLVLLAAIRQSPLND-- 374
           E L   P    +ATT +   I+  Q   H L IPVDD  Y+S    LLA I+    N   
Sbjct: 70  ENLLGDPSFWRSATTSVAVIITADQTYIHRLSIPVDDQYYVSDLPYLLAIIKNGQFNYSY 129

Query: 375 ---GSTYNSPSLPDLSNKPCQPVAL 440
              G   +S  L ++SNK  + V+L
Sbjct: 130 YLLGLNRDSMKLYEVSNKQVKEVSL 154


>tr|A3X150|A3X150_9BRAD NADH dehydrogenase subunit L OS=Nitrobacter
           sp. Nb-311A GN=NB311A_06553 PE=3 SV=1
          Length = 688

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 122 AAFGTFRPPSLATKARSYSWAMLFSLFNGNPHPQATRWYNCNNKNPLGNLLP 277
           A +G F   + A     YSW ++F  F+G PH QA   Y   +++P   L+P
Sbjct: 465 AYYGFFMTVAAAGLTSFYSWRLIFKTFHGKPHDQA--HYKAAHESPTWMLIP 514


>tr|Q3SRF5|Q3SRF5_NITWN NADH-plastoquinone oxidoreductase, chain 5
           OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)
           GN=Nwi_1876 PE=3 SV=1
          Length = 688

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 122 AAFGTFRPPSLATKARSYSWAMLFSLFNGNPHPQATRWYNCNNKNPLGNLLP 277
           A +G     + A     YSW ++F  F+G PH QA   Y   +++P+  L+P
Sbjct: 465 AYYGFLMTVAAAGLTSFYSWRLIFKTFHGKPHDQA--HYKAAHESPIWMLIP 514


>tr|B2Z458|B2Z458_VITVI GAGA-binding transcriptional activator
           BBR/BPC6-like OS=Vitis vinifera PE=2 SV=1
          Length = 337

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = +2

Query: 2   CPPACKAATATVSSSHPVPHLG*PRHLQPAAPEPTAITCAAAFGTFRPPSLATKAR 169
           CPP C+ +       HP PHL  P HL  AA     +    A       S A K+R
Sbjct: 106 CPPGCQISRGVKHMHHPQPHLHHPTHLSEAAYSAREMHIGDALPVSPVASEAAKSR 161


>tr|B6KHE2|B6KHE2_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_049310 PE=4 SV=1
          Length = 310

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +2

Query: 14  CKAATATVSSSHPVPHLG*PRHLQPAAPEPTAITCAAAFG--TFRPPSLATKARSYSWAM 187
           C++++A++SSS   P  G P      AP+P ++  ++A G  +  PP++A  A +YS  +
Sbjct: 4   CESSSASLSSSSSSPSAGLPSDEGGRAPKPVSVARSSACGVSSSSPPAVAFTATAYSKMV 63

Query: 188 LFSLFNGNPHPQATRWYNCNNKNPLGNLLPS 280
           + +         A    +  N   LG LLP+
Sbjct: 64  MHA---------AKHTQDAVNGVLLGRLLPA 85


>tr|A8N4N6|A8N4N6_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_06014 PE=4 SV=1
          Length = 1852

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +3

Query: 216 TLRPPAGTTATTKIPWAISFPQGHLLHIPVD-DTLYLSSCLVLL--AAIRQSPLNDGSTY 386
           T   P+  + T++IPW +   +G    I V  D L+L+  L L   + + QSP N  + +
Sbjct: 317 TYEHPSVVSPTSQIPWNVLQEEGLTRDILVQLDPLFLARSLTLFHRSVLEQSPENLTAEF 376

Query: 387 NSPSLPDLSNKPCQPVALLFLTHER 461
             P        P  P+A+ F T ++
Sbjct: 377 LLPDSDHAKQSPSIPLAMFFGTEDQ 401


>tr|B7X520|B7X520_COMTE Transcriptional regulator, GntR family
           OS=Comamonas testosteroni KF-1 GN=CtesDRAFT_PD3746 PE=4
           SV=1
          Length = 149

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
 Frame = +1

Query: 28  CHSFIFTSCPSSGVTPTSATRSS*ADSYHLCCSLWHFQATKPC-------------YQSP 168
           CH  + T+ P  G+T T  T +  A++  LC  L H  A   C             Y   
Sbjct: 58  CHEGLLTAQPRRGMTVTRLTTAQVAEAQQLCSLLAHHLAQLQCQQPRGGTELTERLYAIA 117

Query: 169 VILLGYALQPLQRKPSPSGHPLVQLQQ 249
              L  AL P  R P     PL++ Q+
Sbjct: 118 QARLQLALGPAPRTPLTFSAPLIEHQR 144


>tr|Q5Y249|Q5Y249_CRYGA ZNF1p OS=Cryptococcus gattii GN=ZNF1 PE=4
           SV=1
          Length = 848

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 140 RPPSLATKARSYSWAMLFSLFNGNPHPQATRWYNCNNKNPLGNLLPSRT 286
           +PP LA  A+ YSW      +  N  P+  +    NN +  G L  +RT
Sbjct: 192 QPPLLAKPAKGYSWVCPSCFYQPNTQPEGQKLLLLNNSSGAGKLRAART 240


>tr|A9U2Z6|A9U2Z6_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_200668 PE=4 SV=1
          Length = 1497

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 187  ALQPLQRKPSPSGHPL----VQLQQQKSLGQSPSLKDTYCIFLSMTHSICLAASFCWPLS 354
            A + LQ K +P+  PL    V+  Q+ +    P+ K +   FL  T   CL +S  +  S
Sbjct: 920  AARQLQLKLAPTHVPLELLLVEAAQKIATVSVPTAKGSVPAFLHPTVVECLRSSGIFETS 979

Query: 355  DSPHSMMVLPITLLRCP 405
            DS  SM VL +    CP
Sbjct: 980  DSVTSMQVLKVLTNACP 996


>tr|B2IAX4|B2IAX4_BEII9 Putative uncharacterized protein
           OS=Beijerinckia indica subsp. indica (strain ATCC 9039 /
           DSM 1715 / NCIB 8712) GN=Bind_0015 PE=4 SV=1
          Length = 493

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +3

Query: 159 PKPGHTPGLCS-SASSTETLTLRPPAGTTATTKIPWAISFPQG--HLLHI----PVDDTL 317
           P+P  T  + +    S+E   +   AG T T  IP  +SFPQG   L H+    PV D L
Sbjct: 368 PRPFRTVVISNVDPDSSEAAAVVTEAGATETQSIPLGLSFPQGVFSLSHVALPFPVTDAL 427

Query: 318 Y 320
           Y
Sbjct: 428 Y 428