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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921220
Clone id YMU001_000147_B06
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAAAAATGATGAATGAAAGATTTCCTTGGAAAGAATAGGGTATTGAGATTATGTACATA
ATCAACGGGTATCCTTCGCTTGGCAAACTCCAGGAAAAGCAAAGTGCCTTACATTTAATT
GTCGCTTGCTATATTTATACTCGTCTCCTTCCTGGTACCAAAATTGTCCTGCCGTGAATT
CTCAGCTCCAAAATCTAACCGCCGAAATTAAAGCTAGACTTATCAGTAGGACAATAAATG
AAACCCATAGCCATGTGGGAGGACGTTGCCAAACATTTTTCCTAGAAACAGGATTCAGAA
TTTGTCTTTGGGATCTTGGCTGTTTCCCCAGAAATCCTTTCCCATTCCTGCCGGAAGGAG
ACTCTTTAGCAGAAGTTTTGGTCAGTTCTTCTGCACCAAGCTCTTTCTCTCTGTCCTCTA
CTGTCTCTGCAGTGTTTATGTCTTCAACGCCAACAGCCGCCTTTTTCTTGCCTTTTTGGC
TCTCTCCTTCTCTCTGCGTTCCGCCTCTTTCTGTGCCCTGAGCTGAGCCTTCGCTTGTGC
TCGCTCAGGC
■■Homology search results ■■ -
sp_hit_id A7MZI5
Definition sp|A7MZI5|IF2_VIBHB Translation initiation factor IF-2 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
Align length 59
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921220|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_B06.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A7MZI5|IF2_VIBHB Translation initiation factor IF-2 OS=Vibrio...    31   3.3  
sp|A0AK37|HIS8_LISW6 Histidinol-phosphate aminotransferase OS=Li...    31   4.3  
sp|Q9Z139|ROR1_MOUSE Tyrosine-protein kinase transmembrane recep...    30   5.6  
sp|Q01973|ROR1_HUMAN Tyrosine-protein kinase transmembrane recep...    30   5.6  
sp|Q2RL44|HIS8_MOOTA Histidinol-phosphate aminotransferase OS=Mo...    30   7.4  
sp|Q9KCA8|HIS8_BACHD Histidinol-phosphate aminotransferase OS=Ba...    30   9.7  

>sp|A7MZI5|IF2_VIBHB Translation initiation factor IF-2 OS=Vibrio
           harveyi (strain ATCC BAA-1116 / BB120) GN=infB PE=3 SV=1
          Length = 894

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -1

Query: 415 AETVEDREKELGAEELTKTSAKESPSGRNGKGFLGKQPRSQRQILNPVSRKNVWQRPPT 239
           AE   DR++E GA    K  AKE  S R G+   G + R++ ++  P S ++ + +  T
Sbjct: 251 AEDAADRKEEGGARRKKKKPAKEEQS-RGGRNQRGGKGRNKGKLAKPTSMQHGFDKSAT 308


>sp|A0AK37|HIS8_LISW6 Histidinol-phosphate aminotransferase
           OS=Listeria welshimeri serovar 6b (strain ATCC 35897 /
           DSM 20650 / SLCC5334) GN=hisC PE=3 SV=1
          Length = 360

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 451 KKAAVGVEDINTAETVEDREKELGAEELTKTSAKESPSGRNGK 323
           KK+  G+      +  E+   ELG  E+TK S+ E+P G + K
Sbjct: 4   KKSLTGLSSYKPGKREEEVMAELGLTEITKLSSNENPLGTSPK 46


>sp|Q9Z139|ROR1_MOUSE Tyrosine-protein kinase transmembrane receptor
           ROR1 OS=Mus musculus GN=Ror1 PE=2 SV=1
          Length = 937

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 425 HKHCRDSRGQRERAWCRRTDQNF 357
           H +CR+   Q+E  WC   D+NF
Sbjct: 359 HSYCRNPGNQKEAPWCFTLDENF 381


>sp|Q01973|ROR1_HUMAN Tyrosine-protein kinase transmembrane receptor
           ROR1 OS=Homo sapiens GN=ROR1 PE=2 SV=2
          Length = 937

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 425 HKHCRDSRGQRERAWCRRTDQNF 357
           H +CR+   Q+E  WC   D+NF
Sbjct: 359 HSYCRNPGNQKEAPWCFTLDENF 381


>sp|Q2RL44|HIS8_MOOTA Histidinol-phosphate aminotransferase
           OS=Moorella thermoacetica (strain ATCC 39073) GN=hisC
           PE=3 SV=1
          Length = 386

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -1

Query: 451 KKAAVGVEDINTAETVEDREKELGAEELTKTSAKESPSGRNGKGFLGKQPRSQRQILNP 275
           ++A + ++     + +E+ ++ELG +++ K ++ E+P G +       Q  S R  L P
Sbjct: 29  REAILSIKPYVPGKPIEEVQRELGVKDVIKLASNENPLGPSPDAVQALQEASDRIFLYP 87


>sp|Q9KCA8|HIS8_BACHD Histidinol-phosphate aminotransferase
           OS=Bacillus halodurans GN=hisC PE=3 SV=1
          Length = 369

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 451 KKAAVGVEDINTAETVEDREKELGAEELTKTSAKESPSGRNGK 323
           K   +G+      + +ED ++ELG E + K ++ E+P G + K
Sbjct: 4   KPQIIGLPPYKPGKPMEDVKRELGLETVVKLASNENPFGASPK 46
tr_hit_id A8P123
Definition tr|A8P123|A8P123_BRUMA Zinc finger, C2H2 type family protein OS=Brugia malayi
Align length 70
Score (bit) 34.3
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921220|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_B06.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8P123|A8P123_BRUMA Zinc finger, C2H2 type family protein OS=...    34   4.2  
tr|Q6C9S5|Q6C9S5_YARLI YALI0D08734p OS=Yarrowia lipolytica GN=YA...    34   4.2  
tr|Q2R150|Q2R150_ORYSJ Putative uncharacterized protein OS=Oryza...    34   5.5  
tr|A2ZGC9|A2ZGC9_ORYSI Putative uncharacterized protein OS=Oryza...    34   5.5  

>tr|A8P123|A8P123_BRUMA Zinc finger, C2H2 type family protein
           OS=Brugia malayi GN=Bm1_13870 PE=4 SV=1
          Length = 661

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 442 AVGVEDINTAETVEDREKELGAEELTKTSAKESPSGRNGKGFLGKQPRSQRQILNPVSRK 263
           AV   D+  A  +ED + EL A++L+  S+        G+  LG     Q   ++P   K
Sbjct: 413 AVVCGDVEKAPLLEDSKYELNAQDLSNESSSRLQVRSKGRPRLGHGKAGQLGKVSPSISK 472

Query: 262 NVWQRPPTWL 233
                PP WL
Sbjct: 473 KKKHGPPVWL 482


>tr|Q6C9S5|Q6C9S5_YARLI YALI0D08734p OS=Yarrowia lipolytica
           GN=YALI0D08734g PE=4 SV=1
          Length = 341

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = -1

Query: 439 VGVEDINTAETVEDREKELGAEELTKTSAKESPS-----GRNGKGFLGKQPRSQRQILNP 275
           +G++     E  ++RE+E GA    +  A+ SPS     G   +G   K  RS R    P
Sbjct: 149 IGIKVAKKKEVAKEREREKGASGSGEREARASPSVGGRPGATARGTPSKPSRSDRP--TP 206

Query: 274 VSRKNVWQRPPT 239
             R    +RPP+
Sbjct: 207 SDRPTAGKRPPS 218


>tr|Q2R150|Q2R150_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=LOC_Os11g40350 PE=4 SV=1
          Length = 104

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = -1

Query: 409 TVEDREKELGAEELTKTSAKESPSGRNG------KGFLGKQPRSQRQILNPVSRKNV 257
           T ED +   G  E  +   ++  SGR+G      KG+ G++PR  RQ L P+ R+NV
Sbjct: 19  TAEDGQDGGGGGERGEGDGEDGKSGRHGTRGGSGKGWRGEKPRQSRQ-LRPLPRRNV 74


>tr|A2ZGC9|A2ZGC9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36831 PE=4 SV=1
          Length = 104

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = -1

Query: 409 TVEDREKELGAEELTKTSAKESPSGR------NGKGFLGKQPRSQRQILNPVSRKNV 257
           T EDR+   G  E  +   ++  SGR      +G+G  G++PR  RQ L P+ R+NV
Sbjct: 19  TAEDRQDGGGGGERGEGDGEDGKSGRRGTRGGSGRGRRGEKPRQSRQ-LRPLPRRNV 74