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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921229
Clone id YMU001_000147_C03
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCGCGGCCGCGAATTGTAAGATACAAGAAACCAGGCAATTAGAGGAAACATACCTTA
CATAAGGCATACAATCTCAAAAATAAAAACACACTTTGCGAATAGAAACCCACCCTCATG
ATCAAATACAACCGCTATGTGTGAAGGCATCAGCTCAAAAACCTTCAAAACCTGTTACAG
AGAAAATGGAATTCTAATTGATACCTGTATCTGCCTCGTGTCACTCATCTGATTCAAACA
TACTGCTATCAATCACTTAAAGCATGAATGTGTAGCATTCACTACAAGTTTACCTATGCT
ACTTGTGCCTGCCCATGTAATTGTCAAATTAAATAAGGAGATCCATGGAATGCCAATAAA
GCTCAACATCAAATGTAGTTCCAGCAAGGTAAGAAATTCTATCACCCAAGGTGTCTTGCA
TCTGTAACAATGAGGGATTCAACACCTTGGATTGAAGGTGCTTGGGCAGACTAGGAGGAT
GCAGTGTCTTCTACTTTAGCTTTGAAGCAAAGCAATAACAAGAGGTGATCATGTTGTAAA
TATCAT
■■Homology search results ■■ -
sp_hit_id P30845
Definition sp|P30845|YJDB_ECOLI UPF0141 membrane protein yjdB OS=Escherichia coli (strain K12)
Align length 106
Score (bit) 34.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921229|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_C03.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30845|YJDB_ECOLI UPF0141 membrane protein yjdB OS=Escherichi...    35   0.29 
sp|P36555|YJDB_SALTY UPF0141 membrane protein yjdB OS=Salmonella...    34   0.38 
sp|O35757|VEGFC_RAT Vascular endothelial growth factor C OS=Ratt...    33   1.1  
sp|P97953|VEGFC_MOUSE Vascular endothelial growth factor C OS=Mu...    33   1.1  
sp|Q60670|SN1L1_MOUSE Serine/threonine-protein kinase SNF1-like ...    31   3.2  
sp|P49767|VEGFC_HUMAN Vascular endothelial growth factor C OS=Ho...    31   4.2  
sp|P43007|SATT_HUMAN Neutral amino acid transporter A OS=Homo sa...    30   7.1  

>sp|P30845|YJDB_ECOLI UPF0141 membrane protein yjdB OS=Escherichia
           coli (strain K12) GN=yjdB PE=1 SV=2
          Length = 547

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI      + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 371 LQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 427

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 428 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 471


>sp|P36555|YJDB_SALTY UPF0141 membrane protein yjdB OS=Salmonella
           typhimurium GN=yjdB PE=3 SV=1
          Length = 547

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI      + NR PP     T  C+   +   + C +E  I   D  +  
Sbjct: 371 LKGDGVIVLHTIGSHGPTYYNRYPPQFKKFTPTCD---TNEIQNCSQEQLINTYDNTVLY 427

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMPIKL 346
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P  +
Sbjct: 428 VDYIVDK--AINLLKSHQDKFTTSLVYLSDHGESLGENGVYLHGLPYSI 474


>sp|O35757|VEGFC_RAT Vascular endothelial growth factor C OS=Rattus
           norvegicus GN=Vegfc PE=1 SV=2
          Length = 415

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
 Frame = +1

Query: 217 QTYCYQSLKA*MCSIHYKFTYATCACPCNCQIK*GDPWNANKA------QHQM*FQQGKK 378
           Q  C   L    C  + +F   TC C C        P N  K         Q  F +GKK
Sbjct: 312 QCVCKNKLFLNSCGANREFDENTCQCVCKRTCPRNQPLNPGKCACECTENTQKCFLKGKK 371

Query: 379 FYHPRC 396
           F+H  C
Sbjct: 372 FHHQTC 377


>sp|P97953|VEGFC_MOUSE Vascular endothelial growth factor C OS=Mus
           musculus GN=Vegfc PE=1 SV=1
          Length = 415

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
 Frame = +1

Query: 217 QTYCYQSLKA*MCSIHYKFTYATCACPCNCQIK*GDPWNANKA------QHQM*FQQGKK 378
           Q  C   L    C  + +F   TC C C        P N  K         Q  F +GKK
Sbjct: 312 QCVCKNKLFPNSCGANREFDENTCQCVCKRTCPRNQPLNPGKCACECTENTQKCFLKGKK 371

Query: 379 FYHPRC 396
           F+H  C
Sbjct: 372 FHHQTC 377


>sp|Q60670|SN1L1_MOUSE Serine/threonine-protein kinase SNF1-like
           kinase 1 OS=Mus musculus GN=Snf1lk PE=1 SV=2
          Length = 779

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +2

Query: 47  RHTISKIKTHFANRNPP----S*SNTTAMCEGISS 139
           RHT++++ THF+  NPP    S S T +  EG SS
Sbjct: 473 RHTLAEVSTHFSPLNPPCIIVSSSATASPSEGTSS 507


>sp|P49767|VEGFC_HUMAN Vascular endothelial growth factor C OS=Homo
           sapiens GN=VEGFC PE=1 SV=1
          Length = 419

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
 Frame = +1

Query: 217 QTYCYQSLKA*MCSIHYKFTYATCACPCNCQIK*GDPWNANKA------QHQM*FQQGKK 378
           Q  C   L    C  + +F   TC C C        P N  K         Q    +GKK
Sbjct: 316 QCVCKNKLFPSQCGANREFDENTCQCVCKRTCPRNQPLNPGKCACECTESPQKCLLKGKK 375

Query: 379 FYHPRC 396
           F+H  C
Sbjct: 376 FHHQTC 381


>sp|P43007|SATT_HUMAN Neutral amino acid transporter A OS=Homo
           sapiens GN=SLC1A4 PE=1 SV=1
          Length = 532

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 378 ILSPKVSCICNNEGFNTLD*RCLGRLGGCSVFYF 479
           I+ P V C   + G  +LD  CLGRLGG +V YF
Sbjct: 89  IILPLVVCSLVS-GAASLDASCLGRLGGIAVAYF 121
tr_hit_id Q7A8Y4
Definition tr|Q7A8Y4|Q7A8Y4_ECO57 Putative uncharacterized protein ECs5096 OS=Escherichia coli O157:H7
Align length 106
Score (bit) 36.2
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921229|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_C03.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7A8Y4|Q7A8Y4_ECO57 Putative uncharacterized protein ECs5096 ...    36   1.0  
tr|B6ZV30|B6ZV30_ECO57 Putative sulfatase OS=Escherichia coli O1...    36   1.0  
tr|B3B060|B3B060_ECO57 Putative sulfatase OS=Escherichia coli O1...    36   1.0  
tr|B8BHS5|B8BHS5_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.3  
tr|Q8XEJ3|Q8XEJ3_ECO57 Putative uncharacterized protein yjdB OS=...    35   3.0  
tr|Q83IR4|Q83IR4_SHIFL Putative uncharacterized protein yjdB OS=...    35   3.0  
tr|Q3YUM9|Q3YUM9_SHISS Putative uncharacterized protein yjdB OS=...    35   3.0  
tr|Q31TP0|Q31TP0_SHIBS Putative uncharacterized protein yjdB OS=...    35   3.0  
tr|Q0SXW3|Q0SXW3_SHIF8 Putative uncharacterized protein yjdB OS=...    35   3.0  
tr|B6I5Y5|B6I5Y5_ECOSE Putative uncharacterized protein OS=Esche...    35   3.0  
tr|B5Z2C2|B5Z2C2_ECO5E Putative sulfatase OS=Escherichia coli O1...    35   3.0  
tr|B1XCZ7|B1XCZ7_ECODH Predicted metal dependent hydrolase OS=Es...    35   3.0  
tr|B1ITU7|B1ITU7_ECOLC Sulfatase OS=Escherichia coli (strain ATC...    35   3.0  
tr|A8A7L0|A8A7L0_ECOHS Putative sulfatase OS=Escherichia coli O9...    35   3.0  
tr|A7ZUY4|A7ZUY4_ECO24 Putative sulfatase OS=Escherichia coli O1...    35   3.0  
tr|B7NG50|B7NG50_ECOLX Putative metal dependent hydrolase OS=Esc...    35   3.0  
tr|B7M8M4|B7M8M4_ECOLX Putative metal dependent hydrolase OS=Esc...    35   3.0  
tr|B7LB56|B7LB56_ECOLX Putative metal dependent hydrolase OS=Esc...    35   3.0  
tr|B3XCN2|B3XCN2_ECOLX Putative sulfatase OS=Escherichia coli 10...    35   3.0  
tr|B3WYW1|B3WYW1_SHIDY Putative sulfatase OS=Shigella dysenteria...    35   3.0  
tr|B3WJ46|B3WJ46_ECOLX Putative sulfatase OS=Escherichia coli B1...    35   3.0  
tr|B3IGV6|B3IGV6_ECOLX Putative sulfatase OS=Escherichia coli E1...    35   3.0  
tr|B3I3F1|B3I3F1_ECOLX Putative sulfatase OS=Escherichia coli E2...    35   3.0  
tr|B3H9N7|B3H9N7_ECOLX Putative sulfatase OS=Escherichia coli B7...    35   3.0  
tr|B3BTI0|B3BTI0_ECO57 Putative sulfatase OS=Escherichia coli O1...    35   3.0  
tr|B3BAY6|B3BAY6_ECO57 Putative sulfatase OS=Escherichia coli O1...    35   3.0  
tr|B3AHD9|B3AHD9_ECO57 Putative sulfatase OS=Escherichia coli O1...    35   3.0  
tr|B3A6E5|B3A6E5_ECO57 Putative sulfatase OS=Escherichia coli O1...    35   3.0  
tr|B2PJH8|B2PJH8_ECO57 Putative sulfatase OS=Escherichia coli O1...    35   3.0  
tr|B2P2P1|B2P2P1_ECO57 Putative sulfatase OS=Escherichia coli O1...    35   3.0  

>tr|Q7A8Y4|Q7A8Y4_ECO57 Putative uncharacterized protein ECs5096
           OS=Escherichia coli O157:H7 GN=ECs5096 PE=4 SV=1
          Length = 557

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI   +  + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 381 LQGDGVIVLHTIGSHRPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 437

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 438 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 481


>tr|B6ZV30|B6ZV30_ECO57 Putative sulfatase OS=Escherichia coli
           O157:H7 str. TW14588 GN=ESCCO14588_1015 PE=4 SV=1
          Length = 547

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI   +  + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 371 LQGDGVIVLHTIGSHRPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 427

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 428 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 471


>tr|B3B060|B3B060_ECO57 Putative sulfatase OS=Escherichia coli
           O157:H7 str. EC4501 GN=ECH7EC4501_0307 PE=4 SV=1
          Length = 547

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI   +  + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 371 LQGDGVIVLHTIGSHRPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 427

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 428 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 471


>tr|B8BHS5|B8BHS5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34254 PE=4 SV=1
          Length = 1084

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 472 KTLHPPSLPKHLQSKVLNPSLLQMQDTLGDRISYLAGTTFDVE 344
           K +H P L  H  S  LNPS L+    +  +I Y+AG   D++
Sbjct: 73  KVIHLPHLRNHTLSSALNPSRLKFMSNMERKIKYIAGKIDDLK 115


>tr|Q8XEJ3|Q8XEJ3_ECO57 Putative uncharacterized protein yjdB
           OS=Escherichia coli O157:H7 GN=yjdB PE=4 SV=1
          Length = 557

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI      + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 381 LQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 437

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 438 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 481


>tr|Q83IR4|Q83IR4_SHIFL Putative uncharacterized protein yjdB
           OS=Shigella flexneri GN=yjdB PE=4 SV=4
          Length = 557

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI      + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 381 LQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 437

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 438 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 481


>tr|Q3YUM9|Q3YUM9_SHISS Putative uncharacterized protein yjdB
           OS=Shigella sonnei (strain Ss046) GN=yjdB PE=4 SV=1
          Length = 557

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI      + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 381 LQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 437

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 438 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 481


>tr|Q31TP0|Q31TP0_SHIBS Putative uncharacterized protein yjdB
           OS=Shigella boydii serotype 4 (strain Sb227) GN=yjdB
           PE=4 SV=1
          Length = 557

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI      + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 381 LQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 437

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 438 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 481


>tr|Q0SXW3|Q0SXW3_SHIF8 Putative uncharacterized protein yjdB
           OS=Shigella flexneri serotype 5b (strain 8401) GN=yjdB
           PE=4 SV=1
          Length = 530

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI      + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 354 LQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCD---TNEIQTCTKEQLVNTYDNTLVY 410

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 411 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 454


>tr|B6I5Y5|B6I5Y5_ECOSE Putative uncharacterized protein
           OS=Escherichia coli (strain SE11) GN=ECSE_4412 PE=4 SV=1
          Length = 557

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 23  IRGNIPYIRHTISKIKTHFANRNPPS*SNTTAMCEGISSKTFKTCYRENGI-LIDTCICL 199
           ++G+   + HTI      + NR PP     T  C+   +   +TC +E  +   D  +  
Sbjct: 381 LQGDGVIVLHTIGSHGPTYYNRYPPQFRKFTPTCD---TNEIQTCSKEQLVNTYDNTLVY 437

Query: 200 VSLI*FKHTAINHLKHECVAFTTSLPMLLVPAHVIVKLNKEIHGMP 337
           V  I  K  AIN LK     FTTSL  L      + +    +HG+P
Sbjct: 438 VDYIVDK--AINLLKEHQDKFTTSLVYLSDHGESLGENGIYLHGLP 481