BP921234 |
Clone id |
YMU001_000147_C09 |
Library |
YMU01 |
Length |
556 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000147_C09. |
Accession |
BP921234 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2723Contig1 |
Sequence |
CACAAATGACTTGAGGAGCTAAAAATTACATGTTTTGAGAATCTTTCATGCCCGTGTCCA CTCCGTTCCCATTCCATACCTTTGGCCCCATTCCTCATTCTGTTCGCATTCATGTTCCAT GCAACCATGACAAGCATTCAGTGAACTTCCCATGATAAGAAATGATCAACCAGGAGAGCA AAAAACAAAGAATGTCTGGGCTCCATTGTTCCAAAACATCCCTTTCCAAGTATCTTACAA CTCTCCACCCAAAGTATACAGCTGAGTTCTGTCGCCAAGTTTTTATTATCATCGAATTGT CAACTCCTTGAGAAGATATCCTTCTTTGCTGGTGTTGAGGATGGCGGAACCTTAGCTGGA TCTTTTGCGGCCTTCTTCAATTCCGCAACCGCACGCTTCACATACTGGATGTAGCCATCC ACATTGAACTTCCTCTTACACCCGTTGTAGTTCATAAAACGTATTTTTCCAAACACAGGA CGCTCCTGCCATCCCTGATCATGTATGCCGCAAATAGACCACATGCAACCAACGTAGCCA TTTGGATCTCTTCCGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P34205 |
Definition |
sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius auratus |
Align length |
45 |
Score (bit) |
97.4 |
E-value |
4.0e-20 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921234|Adiantum capillus-veneris mRNA, clone: YMU001_000147_C09. (556 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassi... 97 4e-20 sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorou... 93 8e-19 sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methano... 68 3e-11 sp|Q89AR4|AKH_BUCBP Bifunctional aspartokinase/homoserine dehydr... 32 2.7 sp|P50482|SL9A2_RABIT Sodium/hydrogen exchanger 2 OS=Oryctolagus... 31 3.6 sp|Q9UBY0|SL9A2_HUMAN Sodium/hydrogen exchanger 2 OS=Homo sapien... 31 3.6 sp|Q8ZK76|RCMNS_SALTY Regulator of cell morphogenesis and NO sig... 30 6.0 sp|Q8Z157|RCMNS_SALTI Regulator of cell morphogenesis and NO sig... 30 6.0 sp|A9N529|RCMNS_SALPB Regulator of cell morphogenesis and NO sig... 30 6.0 sp|Q5PJ71|RCMNS_SALPA Regulator of cell morphogenesis and NO sig... 30 6.0 sp|Q57GI1|RCMNS_SALCH Regulator of cell morphogenesis and NO sig... 30 6.0 sp|Q6MKR7|SYC_BDEBA Cysteinyl-tRNA synthetase OS=Bdellovibrio ba... 30 6.1
>sp|P34205|PHR_CARAU Deoxyribodipyrimidine photo-lyase OS=Carassius auratus GN=phr PE=2 SV=1 Length = 556
Score = 97.4 bits (241), Expect = 4e-20 Identities = 40/45 (88%), Positives = 42/45 (93%) Frame = -3
Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNV 420 G DPNGYVGCMWSICGIHDQGW ERP+FGKIRFMNY GCKRKF+V Sbjct: 487 GCDPNGYVGCMWSICGIHDQGWAERPIFGKIRFMNYAGCKRKFDV 531
>sp|Q28811|PHR_POTTR Deoxyribodipyrimidine photo-lyase OS=Potorous tridactylus GN=PHR PE=2 SV=1 Length = 532
Score = 93.2 bits (230), Expect = 8e-19 Identities = 38/45 (84%), Positives = 41/45 (91%) Frame = -3
Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNV 420 G DPNGYVGCMWSICGIHDQGW ER +FGKIR+MNY GCKRKF+V Sbjct: 477 GWDPNGYVGCMWSICGIHDQGWAEREIFGKIRYMNYAGCKRKFDV 521
>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methanobacterium thermoautotrophicum GN=phr PE=3 SV=2 Length = 445
Score = 67.8 bits (164), Expect = 3e-11 Identities = 28/58 (48%), Positives = 38/58 (65%) Frame = -3
Query: 554 GRDPNGYVGCMWSICGIHDQGWQERPVFGKIRFMNYNGCKRKFNVDGYIQYVKRAVAE 381 GRDPNG+ G W G HD+ W ER +FGK+R+MN G KRKF +D Y+ ++ + E Sbjct: 389 GRDPNGFAGVAWCF-GKHDRAWAEREIFGKVRYMNDRGLKRKFRIDEYVDRIRGLMDE 445
>sp|Q89AR4|AKH_BUCBP Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=thrA PE=3 SV=1 Length = 816
Score = 31.6 bits (70), Expect = 2.7 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 6/128 (4%) Frame = +3
Query: 93 PHSVRIHVPCNHDKHSVNFP**EMINQESKKQRMSGLHCSKTSL--SKYLTTLHPK-YTA 263 P S+ + CNH K+ N + + +H S SK + T+ PK ++ Sbjct: 289 PSSIGTKISCNHVKNK---------NLITGVTYLENVHMFSISCLYSKNIETIIPKIFSC 339
Query: 264 EFCRQVFIIIELSTP*EDILLCWC*GWRNLSWIFCGLLQFRNRTLHILDVAIHIELP--- 434 +++II+ + T ++ + FC L N LH+L A+++EL Sbjct: 340 MSLSKIWIILTIQTSSQNTIS------------FCILKTMTNTALHVLHKALYLELKHKL 387
Query: 435 LTPVVVHK 458 L P+ V K Sbjct: 388 LKPIKVEK 395
>sp|P50482|SL9A2_RABIT Sodium/hydrogen exchanger 2 OS=Oryctolagus cuniculus GN=SLC9A2 PE=2 SV=1 Length = 809
Score = 31.2 bits (69), Expect = 3.6 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 8/49 (16%) Frame = +1
Query: 283 LLSSNCQL--LEKISFFAGVED------GGTLAGSFAAFFNSATARFTY 405 L S CQ+ +E I FAG+ + GG L G F F + T RFT+ Sbjct: 256 LFKSFCQMKTIETIDVFAGIANFFVVGIGGVLIGIFLGFIAAFTTRFTH 304
>sp|Q9UBY0|SL9A2_HUMAN Sodium/hydrogen exchanger 2 OS=Homo sapiens GN=SLC9A2 PE=2 SV=1 Length = 812
Score = 31.2 bits (69), Expect = 3.6 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 8/49 (16%) Frame = +1
Query: 283 LLSSNCQL--LEKISFFAGVED------GGTLAGSFAAFFNSATARFTY 405 L S CQ+ +E I FAG+ + GG L G F F + T RFT+ Sbjct: 256 LFKSFCQMKTIETIDVFAGIANFFVVGIGGVLIGIFLGFIAAFTTRFTH 304
>sp|Q8ZK76|RCMNS_SALTY Regulator of cell morphogenesis and NO signaling OS=Salmonella typhimurium GN=ytfE PE=3 SV=1 Length = 220
Score = 30.4 bits (67), Expect = 6.0 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = +3
Query: 126 HDKHSVNFP**EMINQESKKQRMSGLHCSKTS----LSKYLTTLHPKYTAEFCRQVFIII 293 HD+H P E+I Q +K +R+ H K + L+KYLT LH + ++ ++ I+ Sbjct: 84 HDRHREQLP--ELILQATKVERV---HADKPNVPRGLTKYLTALHEELSSHMMKEEQILF 138
Query: 294 EL 299 + Sbjct: 139 PM 140
>sp|Q8Z157|RCMNS_SALTI Regulator of cell morphogenesis and NO signaling OS=Salmonella typhi GN=ytfE PE=3 SV=1 Length = 220
Score = 30.4 bits (67), Expect = 6.0 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = +3
Query: 126 HDKHSVNFP**EMINQESKKQRMSGLHCSKTS----LSKYLTTLHPKYTAEFCRQVFIII 293 HD+H P E+I Q +K +R+ H K + L+KYLT LH + ++ ++ I+ Sbjct: 84 HDRHREQLP--ELILQATKVERV---HADKPNVPRGLTKYLTALHEELSSHMMKEEQILF 138
Query: 294 EL 299 + Sbjct: 139 PM 140
>sp|A9N529|RCMNS_SALPB Regulator of cell morphogenesis and NO signaling OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ytfE PE=3 SV=1 Length = 220
Score = 30.4 bits (67), Expect = 6.0 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = +3
Query: 126 HDKHSVNFP**EMINQESKKQRMSGLHCSKTS----LSKYLTTLHPKYTAEFCRQVFIII 293 HD+H P E+I Q +K +R+ H K + L+KYLT LH + ++ ++ I+ Sbjct: 84 HDRHREQLP--ELILQATKVERV---HADKPNVPRGLTKYLTALHEELSSHMMKEEQILF 138
Query: 294 EL 299 + Sbjct: 139 PM 140
>sp|Q5PJ71|RCMNS_SALPA Regulator of cell morphogenesis and NO signaling OS=Salmonella paratyphi A GN=ytfE PE=3 SV=1 Length = 220
Score = 30.4 bits (67), Expect = 6.0 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = +3
Query: 126 HDKHSVNFP**EMINQESKKQRMSGLHCSKTS----LSKYLTTLHPKYTAEFCRQVFIII 293 HD+H P E+I Q +K +R+ H K + L+KYLT LH + ++ ++ I+ Sbjct: 84 HDRHREQLP--ELILQATKVERV---HADKPNVPRGLTKYLTALHEELSSHMMKEEQILF 138
Query: 294 EL 299 + Sbjct: 139 PM 140
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6WS77 |
Definition |
tr|Q6WS77|Q6WS77_9FILI Type II CPD DNA photolyase OS=Pityrogramma austroamericana |
Align length |
80 |
Score (bit) |
144.0 |
E-value |
3.0e-33 |
Report |
|