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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921235
Clone id YMU001_000147_C10
Library
Length 239
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTCTAAGGGTCCTTGGCAGCTACCCCATGGACATTACCCCTTCAACACGCTGTCCTCCA
TCTTTGTAAGCCAGTAAGCTTACTTTGCAAGCACAACACACAAGCTCGTTATGTGATGGG
AGTGTGCCCACTATCACTCCTTGGAATGTGGTTCTTGAGCCATGTCAATCCCGGGGTTGG
TATCAAAGCCGGGCACATCCGCCCAACGGGAATTTTGCACATCGTCGGATCCCCAGTTG
■■Homology search results ■■ -
sp_hit_id A2VEC9
Definition sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens
Align length 76
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921235|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_C10.
         (239 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1     32   0.99 
sp|Q07471|THI3_YEAST Thiamine metabolism regulatory protein THI3...    29   8.4  

>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1
          Length = 5147

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
 Frame = +1

Query: 43   STRCPPSL*ASKLTLQ----AQHTSSLC-------DGSVPTITPWNVVLEPCQSRGWYQS 189
            S RC P      L LQ     +H S  C       DG   T +PW+V  EPC+     Q 
Sbjct: 1718 SRRCSP---LGLLVLQNCPGPEHQSQACFTAACPVDGEWSTWSPWSVCSEPCRGTMTRQR 1774

Query: 190  RAH-PPNGNFAHRRIP 234
            + H P NG      +P
Sbjct: 1775 QCHSPQNGGRTCAALP 1790


>sp|Q07471|THI3_YEAST Thiamine metabolism regulatory protein THI3
           OS=Saccharomyces cerevisiae GN=THI3 PE=1 SV=1
          Length = 609

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 125 CPLSLLGMWFLSHVNPGVGIKAGHIRPTGILHIVGSP 235
           C ++  G+  LS +N   G  A H+   GILHIVG P
Sbjct: 80  CLITTFGVGELSAINGVAGSYAEHV---GILHIVGMP 113
tr_hit_id Q7XLY2
Definition tr|Q7XLY2|Q7XLY2_ORYSA OSJNBa0042I15.8 protein OS=Oryza sativa
Align length 16
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921235|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_C10.
         (239 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XLY2|Q7XLY2_ORYSA OSJNBa0042I15.8 protein OS=Oryza sativa G...    33   5.4  
tr|Q0JDF7|Q0JDF7_ORYSJ Os04g0406600 protein OS=Oryza sativa subs...    33   5.4  
tr|Q01L56|Q01L56_ORYSA OSIGBa0142C11.3 protein OS=Oryza sativa G...    33   5.4  
tr|B4FSJ7|B4FSJ7_MAIZE Putative uncharacterized protein OS=Zea m...    33   5.4  
tr|B4FQG2|B4FQG2_MAIZE Putative uncharacterized protein OS=Zea m...    33   5.4  
tr|B4FGT4|B4FGT4_MAIZE Putative uncharacterized protein OS=Zea m...    33   5.4  
tr|A3ATK7|A3ATK7_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|A2XT43|A2XT43_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|Q0RL57|Q0RL57_FRAAA Putative uncharacterized protein OS=Frank...    33   7.0  
tr|A6EU66|A6EU66_9BACT Putative orphan protein OS=unidentified e...    33   7.0  
tr|Q9FNJ8|Q9FNJ8_ARATH Chorismate mutase/prephenate dehydratase-...    33   7.0  
tr|B8LQ85|B8LQ85_PICSI Putative uncharacterized protein OS=Picea...    33   9.2  
tr|A9NXE9|A9NXE9_PICSI Putative uncharacterized protein OS=Picea...    33   9.2  

>tr|Q7XLY2|Q7XLY2_ORYSA OSJNBa0042I15.8 protein OS=Oryza sativa
           GN=OSJNBa0042I15.8 PE=4 SV=3
          Length = 419

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1   FLRVLGSYPMDITPST 48
           FLRVLGSYPMD+TP T
Sbjct: 389 FLRVLGSYPMDMTPMT 404


>tr|Q0JDF7|Q0JDF7_ORYSJ Os04g0406600 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0406600 PE=2 SV=1
          Length = 436

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1   FLRVLGSYPMDITPST 48
           FLRVLGSYPMD+TP T
Sbjct: 406 FLRVLGSYPMDMTPMT 421


>tr|Q01L56|Q01L56_ORYSA OSIGBa0142C11.3 protein OS=Oryza sativa
           GN=OSIGBa0142C11.3 PE=4 SV=1
          Length = 420

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1   FLRVLGSYPMDITPST 48
           FLRVLGSYPMD+TP T
Sbjct: 390 FLRVLGSYPMDMTPMT 405


>tr|B4FSJ7|B4FSJ7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 426

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1   FLRVLGSYPMDITPST 48
           FLRVLGSYPMD+TP T
Sbjct: 394 FLRVLGSYPMDMTPMT 409


>tr|B4FQG2|B4FQG2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 419

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1   FLRVLGSYPMDITPST 48
           FLRVLGSYPMD+TP T
Sbjct: 389 FLRVLGSYPMDMTPMT 404


>tr|B4FGT4|B4FGT4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 424

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1   FLRVLGSYPMDITPST 48
           FLRVLGSYPMD+TP T
Sbjct: 392 FLRVLGSYPMDMTPMT 407


>tr|A3ATK7|A3ATK7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014129 PE=4 SV=1
          Length = 419

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1   FLRVLGSYPMDITPST 48
           FLRVLGSYPMD+TP T
Sbjct: 389 FLRVLGSYPMDMTPMT 404


>tr|A2XT43|A2XT43_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15780 PE=4 SV=1
          Length = 437

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +1

Query: 1   FLRVLGSYPMDITPST 48
           FLRVLGSYPMD+TP T
Sbjct: 407 FLRVLGSYPMDMTPMT 422


>tr|Q0RL57|Q0RL57_FRAAA Putative uncharacterized protein OS=Frankia
           alni (strain ACN14a) GN=FRAAL3104 PE=4 SV=1
          Length = 62

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 106 SLCDGSVPTITPWNVVLEPCQSRGWYQSRAHPP 204
           S+  G VP ITPW+    P  SR   + RA PP
Sbjct: 18  SIFGGVVPRITPWHRTTRPAHSRHTARRRAQPP 50


>tr|A6EU66|A6EU66_9BACT Putative orphan protein OS=unidentified
           eubacterium SCB49 GN=SCB49_11287 PE=4 SV=1
          Length = 451

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 109 LCDGSVPTITPWNVVLEPCQSRGWYQSRAHPPNGNFAHRRIPS 237
           +C G       WN    P +  G+  ++AHP  GN+ H + PS
Sbjct: 151 MCPGGPMATQDWNRDAVPAEMAGFDCAKAHPAMGNYHHHQNPS 193