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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921236
Clone id YMU001_000147_C11
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTCGAAGACACATTACTGTTACGCTCACCGATCACGCACAGACAATCAAAGCGAAGGTGC
AGAAGTATATACGGCTTTGCCAAGAGAACAAGAACAGATGCAAAAGCAGGATCTCTCTTG
ATGATCATTGATCGCACACGTGACAAAGGAGAAGGCCTAATGCTGTGAATGGATAGATTG
GAACCAGATGGATCAAAGAGGAGTAGATTTATGCATGTGAACCCTTCAGGCCTAAAAAGT
TCTGGCGAGCTAAGAAATGGCACCCATACATGCAGGAAAATGTGAAAGATGCAAATCAAA
ACACGCACGAGACCATTACTCTAGTTGCATGCGGCAGGTCACAAACATCATTCTTGACGC
ACCTGCTCGACAGTTCATGGAGGCATTTGATAATTGCACTACATTATCTTGCAAGGTTAT
GGAAGACCAGGATCATGAGAACATATGG
■■Homology search results ■■ -
sp_hit_id Q6D469
Definition sp|Q6D469|MDTH_ERWCT Multidrug resistance protein mdtH OS=Erwinia carotovora subsp. atroseptica
Align length 58
Score (bit) 32.7
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921236|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_C11.
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6D469|MDTH_ERWCT Multidrug resistance protein mdtH OS=Erwini...    33   0.71 
sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronaviru...    32   1.2  
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavi...    32   1.2  
sp|A9MGZ7|MDTH_SALAR Multidrug resistance protein mdtH OS=Salmon...    32   1.2  
sp|Q83LI8|MDTH_SHIFL Multidrug resistance protein mdtH OS=Shigel...    32   1.6  
sp|Q0T5W7|MDTH_SHIF8 Multidrug resistance protein mdtH OS=Shigel...    32   1.6  
sp|Q31ZC0|MDTH_SHIBS Multidrug resistance protein mdtH OS=Shigel...    31   2.1  
sp|Q8ZQ19|MDTH_SALTY Multidrug resistance protein mdtH OS=Salmon...    31   2.1  
sp|Q8Z7L0|MDTH_SALTI Multidrug resistance protein mdtH OS=Salmon...    31   2.1  
sp|A9N5P5|MDTH_SALPB Multidrug resistance protein mdtH OS=Salmon...    31   2.1  
sp|Q5PGW7|MDTH_SALPA Multidrug resistance protein mdtH OS=Salmon...    31   2.1  
sp|Q57QJ1|MDTH_SALCH Multidrug resistance protein mdtH OS=Salmon...    31   2.1  
sp|Q1RD92|MDTH_ECOUT Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|P69367|MDTH_ECOLI Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|B1IV37|MDTH_ECOLC Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|P69368|MDTH_ECOL6 Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|Q0TJ09|MDTH_ECOL5 Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|A1A9W0|MDTH_ECOK1 Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|A7ZZ23|MDTH_ECOHS Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|Q7AFA1|MDTH_ECO57 Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|A7ZKH0|MDTH_ECO24 Multidrug resistance protein mdtH OS=Escher...    31   2.1  
sp|Q7VQX5|MDTH_BLOFL Multidrug resistance protein mdtH OS=Blochm...    31   2.1  
sp|Q3Z351|MDTH_SHISS Multidrug resistance protein mdtH OS=Shigel...    31   2.7  
sp|A0LW37|EX7L_ACIC1 Exodeoxyribonuclease 7 large subunit OS=Aci...    31   2.7  
sp|Q8VHG2|AMOT_MOUSE Angiomotin OS=Mus musculus GN=Amot PE=1 SV=3      30   3.6  
sp|A8AI11|MDTH_CITK8 Multidrug resistance protein mdtH OS=Citrob...    30   4.6  
sp|A4W978|MDTH_ENT38 Multidrug resistance protein mdtH OS=Entero...    30   6.0  
sp|A1RZJ9|G1PDH_THEPD Glycerol-1-phosphate dehydrogenase [NAD(P)...    30   6.0  
sp|O32154|YURM_BACSU Probable ABC transporter permease protein y...    29   7.8  
sp|A7MG31|MDTH_ENTS8 Multidrug resistance protein mdtH OS=Entero...    29   7.8  

>sp|Q6D469|MDTH_ERWCT Multidrug resistance protein mdtH OS=Erwinia
           carotovora subsp. atroseptica GN=mdtH PE=3 SV=1
          Length = 401

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = -3

Query: 200 LFDPSGSNLSIHSIRPSPLSRVRSMIIKRDPAFASVLVLLAKPYILLHLRFDCLCVIG 27
           LFDP  + L I  IRP    R  S+++ +D A A +  LL     LL   F+ +C +G
Sbjct: 115 LFDPPRTALVIKLIRPQERGRFYSLLMMQDSAGAVIGALLGS--WLLQYDFEVVCWVG 170


>sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus
            NL63 GN=1a PE=3 SV=1
          Length = 4060

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 314  GLVRVLICIFHIFLHVW 264
            GLV VL+C+F +FLH W
Sbjct: 3349 GLVNVLVCLFVVFLHTW 3365


>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus
            NL63 GN=rep PE=3 SV=1
          Length = 6729

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 314  GLVRVLICIFHIFLHVW 264
            GLV VL+C+F +FLH W
Sbjct: 3349 GLVNVLVCLFVVFLHTW 3365


>sp|A9MGZ7|MDTH_SALAR Multidrug resistance protein mdtH
           OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86
           / RSK2980) GN=mdtH PE=3 SV=1
          Length = 404

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = -3

Query: 200 LFDPSGSNLSIHSIRPSPLSRVRSMIIKRDPAFASVLVLLAKPYILLHLRFDCLCVIG 27
           LFDP  S L +  IRP    R  S+++ +D A A +  LL     LL   F  +C +G
Sbjct: 115 LFDPPRSALVVKLIRPEQRGRFFSLLMMQDSAGAVIGALLGS--WLLQYDFRLVCAMG 170


>sp|Q83LI8|MDTH_SHIFL Multidrug resistance protein mdtH OS=Shigella
           flexneri GN=mdtH PE=3 SV=2
          Length = 402

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -3

Query: 200 LFDPSGSNLSIHSIRPSPLSRVRSMIIKRDPAFASVLVLLAKPYILLHLRFDCLCVIG 27
           LFDP  S L +  IRP    R  S+++ +D A A +  LL     LL   F  +C  G
Sbjct: 115 LFDPPRSALVVKLIRPQQRGRFFSLLMMQDSASAVIGALLGS--WLLQYDFRLVCATG 170


>sp|Q0T5W7|MDTH_SHIF8 Multidrug resistance protein mdtH OS=Shigella
           flexneri serotype 5b (strain 8401) GN=mdtH PE=3 SV=1
          Length = 402

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -3

Query: 200 LFDPSGSNLSIHSIRPSPLSRVRSMIIKRDPAFASVLVLLAKPYILLHLRFDCLCVIG 27
           LFDP  S L +  IRP    R  S+++ +D A A +  LL     LL   F  +C  G
Sbjct: 115 LFDPPRSALVVKLIRPQQRGRFFSLLMMQDSASAVIGALLGS--WLLQYDFRLVCATG 170


>sp|Q31ZC0|MDTH_SHIBS Multidrug resistance protein mdtH OS=Shigella
           boydii serotype 4 (strain Sb227) GN=mdtH PE=3 SV=2
          Length = 400

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -3

Query: 200 LFDPSGSNLSIHSIRPSPLSRVRSMIIKRDPAFASVLVLLAKPYILLHLRFDCLCVIG 27
           LFDP  S L +  IRP    R  S+++ +D A A +  LL     LL   F  +C  G
Sbjct: 115 LFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGS--WLLQYDFRLVCATG 170


>sp|Q8ZQ19|MDTH_SALTY Multidrug resistance protein mdtH
           OS=Salmonella typhimurium GN=mdtH PE=3 SV=1
          Length = 402

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -3

Query: 200 LFDPSGSNLSIHSIRPSPLSRVRSMIIKRDPAFASVLVLLAKPYILLHLRFDCLCVIG 27
           LFDP  S L +  IRP    R  S+++ +D A A +  LL     LL   F  +C  G
Sbjct: 115 LFDPPRSALVVKLIRPEQRDRFFSLLMMQDSAGAVIGALLGS--WLLQYDFRLVCATG 170


>sp|Q8Z7L0|MDTH_SALTI Multidrug resistance protein mdtH
           OS=Salmonella typhi GN=mdtH PE=3 SV=1
          Length = 402

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -3

Query: 200 LFDPSGSNLSIHSIRPSPLSRVRSMIIKRDPAFASVLVLLAKPYILLHLRFDCLCVIG 27
           LFDP  S L +  IRP    R  S+++ +D A A +  LL     LL   F  +C  G
Sbjct: 115 LFDPPRSALVVKLIRPEQRGRFFSLLMMQDSAGAVIGALLGS--WLLQYDFRLVCATG 170


>sp|A9N5P5|MDTH_SALPB Multidrug resistance protein mdtH
           OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
           GN=mdtH PE=3 SV=1
          Length = 402

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -3

Query: 200 LFDPSGSNLSIHSIRPSPLSRVRSMIIKRDPAFASVLVLLAKPYILLHLRFDCLCVIG 27
           LFDP  S L +  IRP    R  S+++ +D A A +  LL     LL   F  +C  G
Sbjct: 115 LFDPPRSALVVKLIRPEQRGRFFSLLMMQDSAGAVIGALLGS--WLLQYDFRLVCATG 170
tr_hit_id Q0E3S4
Definition tr|Q0E3S4|Q0E3S4_ORYSJ Os02g0157300 protein OS=Oryza sativa subsp. japonica
Align length 70
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921236|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_C11.
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0E3S4|Q0E3S4_ORYSJ Os02g0157300 protein OS=Oryza sativa subs...    36   1.1  
tr|Q0E3S9|Q0E3S9_ORYSJ Os02g0156700 protein OS=Oryza sativa subs...    33   5.3  
tr|B4IFV4|B4IFV4_DROSE GM14922 OS=Drosophila sechellia GN=GM1492...    33   7.0  

>tr|Q0E3S4|Q0E3S4_ORYSJ Os02g0157300 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0157300 PE=4 SV=1
          Length = 158

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +3

Query: 222 PFRPKKFWRAKKWHPYMQENVKDANQNTHETITLVACGRSQTSFLTHLLDSSWRHLIIAL 401
           P RP + WR   +   MQE+V++A    H T++     +S  + L  LL   W+ L++  
Sbjct: 78  PERPARNWRRTLFSWSMQESVEEAK---HSTVSRANPSKSVGNLLLILLHGKWKGLMLLA 134

Query: 402 HYLARLWKTR 431
             +A  W ++
Sbjct: 135 DRVASQWSSQ 144


>tr|Q0E3S9|Q0E3S9_ORYSJ Os02g0156700 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0156700 PE=4 SV=1
          Length = 146

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +3

Query: 222 PFRPKKFWRAKKWHPYMQENVKDANQNTHETITLVACGRSQTSFLTHLLDSSWRHLIIAL 401
           P RP + WR   +   MQE+V++A    H T++     +S  + L  LL  +W  L++ L
Sbjct: 78  PERPARNWRRTLFSWSMQESVEEAK---HSTVSRANPSKSVGNLLLLLLHGNWEGLMMDL 134

Query: 402 HYL 410
            ++
Sbjct: 135 FFI 137


>tr|B4IFV4|B4IFV4_DROSE GM14922 OS=Drosophila sechellia GN=GM14922
           PE=4 SV=1
          Length = 518

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 254 LSSPELFRPEGFTCINLLLFDPSGSNLSIHSIRPSPLSRVRSMII 120
           L SP+  +P GFT  N L   PSG  L   S +P P+   R   +
Sbjct: 11  LPSPKFGKPNGFTTSNHLYLTPSGMTLLPRSKQPPPMYGARGSTV 55