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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921239
Clone id YMU001_000147_D02
Library
Length 498
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTCAAAAAGGCCTTTACATTATGGCATTATACAACAAAAAAGTC
TCAATAAACCCTTAAGGTTACACCTGAATAAAATTTAAACTATACCGACAAAAGGATTCC
ATCAACCACCTACAATCTTTTTTGCAATGAGAATGTGGTTCTCTATATCCACCATGTAGC
TCATTATCTGCAGCCTTGGATCTGCCATTGTAATCACTTGGAAAAAGGTAGAGACAAAAC
TGCATTAGGACCCAGCATCAGTGACCATCTAGCCATCTGATTCATTGGGTGCTGGTAGCA
TCAATGCCTTGTGACCGCTACTAGCTAGCATCCTTACTTTCTGCCAGTCATCTTCCTCTT
GGGTGAGCTGACCTTTGTTCCTCATAACAACCTCCTGCATCGCAAGCCAATGCAAGTGGG
ACAGTGGCATCACAACAGGCCACAAACCCTTGTACCACTGAAGATCTCGAGCTAAACTGG
ATTTGGTCCGATACGGTA
■■Homology search results ■■ -
sp_hit_id Q9AXT8
Definition sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays
Align length 96
Score (bit) 31.2
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921239|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_D02.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea...    31   2.5  
sp|A1JTR6|COBD_YERE8 Cobalamin biosynthesis protein cobD OS=Yers...    31   3.3  
sp|Q22271|UNC58_CAEEL Uncoordinated protein 58 OS=Caenorhabditis...    30   7.4  
sp|P48381|RFX3_MOUSE Transcription factor RFX3 OS=Mus musculus G...    30   7.4  
sp|P48380|RFX3_HUMAN Transcription factor RFX3 OS=Homo sapiens G...    30   7.4  

>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea
           mays GN=MET2A PE=1 SV=1
          Length = 912

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 31/96 (32%)
 Frame = -3

Query: 340 EEDDW----------QKVRMLASSGHKALMLPAPNESDG*MVTDAGS*CSFVS------- 212
           EED W          QK+R     GHK  +LP P + D   V   G  C  +S       
Sbjct: 472 EEDTWEPIDNLSDCPQKIREFVQEGHKRKILPLPGDVD---VICGGPPCQGISGFNRYRN 528

Query: 211 --------------TFFQVITMADPRLQIMSYMVDI 146
                         TF  ++    P+  +M  +VDI
Sbjct: 529 RDEPLKDEKNKQMVTFMDIVAYLKPKYVLMENVVDI 564


>sp|A1JTR6|COBD_YERE8 Cobalamin biosynthesis protein cobD
           OS=Yersinia enterocolitica serotype O:8 / biotype 1B
           (strain 8081) GN=cobD PE=3 SV=1
          Length = 318

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -2

Query: 257 WLDGH*CWVLMQFCLYLFPSDYNGRSKAADNELHGGYREPHSHCKKDCRW 108
           WL     WVL+    +L  +DY          L  G+R+ + H   +C W
Sbjct: 207 WLPARLSWVLLSAAAWLIQADYR-------QALRIGWRDRYQHSSPNCAW 249


>sp|Q22271|UNC58_CAEEL Uncoordinated protein 58 OS=Caenorhabditis
           elegans GN=unc-58 PE=1 SV=2
          Length = 591

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +3

Query: 132 RMWFSIS---TM*LIICSLGSAIVITWKKVETKLH 227
           ++WF I    +   I CS+GSA+ ITW++  + +H
Sbjct: 396 KLWFPIGAYVSCICIYCSIGSAMFITWERTWSFIH 430


>sp|P48381|RFX3_MOUSE Transcription factor RFX3 OS=Mus musculus
           GN=Rfx3 PE=2 SV=2
          Length = 749

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 14/62 (22%), Positives = 23/62 (37%)
 Frame = +2

Query: 14  TLWHYTTKKSQ*TLKVTPE*NLNYTDKRIPSTTYNLFCNENVVLYIHHVAHYLQPWICHC 193
           T W Y+         +T   NL+  + R+P       C    +L           W+C+C
Sbjct: 382 TFWRYSPSTPADGTTITESSNLSEIESRLPKAKLITLCKHESIL----------KWMCNC 431

Query: 194 NH 199
           +H
Sbjct: 432 DH 433


>sp|P48380|RFX3_HUMAN Transcription factor RFX3 OS=Homo sapiens
           GN=RFX3 PE=2 SV=2
          Length = 749

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 14/62 (22%), Positives = 23/62 (37%)
 Frame = +2

Query: 14  TLWHYTTKKSQ*TLKVTPE*NLNYTDKRIPSTTYNLFCNENVVLYIHHVAHYLQPWICHC 193
           T W Y+         +T   NL+  + R+P       C    +L           W+C+C
Sbjct: 382 TFWRYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKHESIL----------KWMCNC 431

Query: 194 NH 199
           +H
Sbjct: 432 DH 433
tr_hit_id Q1I3I8
Definition tr|Q1I3I8|Q1I3I8_PSEE4 Putative uncharacterized protein OS=Pseudomonas entomophila (strain L48)
Align length 33
Score (bit) 36.2
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921239|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_D02.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1I3I8|Q1I3I8_PSEE4 Putative uncharacterized protein OS=Pseud...    36   0.83 
tr|Q0V9K5|Q0V9K5_XENTR Rfx3 protein (Fragment) OS=Xenopus tropic...    35   1.4  
tr|B6MDZ1|B6MDZ1_BRAFL Putative uncharacterized protein OS=Branc...    34   4.1  
tr|Q1E5G0|Q1E5G0_COCIM Putative uncharacterized protein OS=Cocci...    33   5.4  

>tr|Q1I3I8|Q1I3I8_PSEE4 Putative uncharacterized protein
           OS=Pseudomonas entomophila (strain L48) GN=PSEEN5170
           PE=4 SV=1
          Length = 151

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 454 ARDLQWYKGLWPVVMPLSHLHWLA-MQEVVMRN 359
           A D QW + LW VVMP  H HWLA  QEV + N
Sbjct: 50  AHDQQWARSLWWVVMP-DHFHWLAEPQEVDLSN 81


>tr|Q0V9K5|Q0V9K5_XENTR Rfx3 protein (Fragment) OS=Xenopus
           tropicalis GN=rfx3 PE=2 SV=1
          Length = 783

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 14  TLWHYTTKKSQ*TLKVTPE*NLNYTDKRIPSTTYNLFC-NENVVLYIHHVAHYLQPWICH 190
           T W Y+         +T   NL+  + R+P +   LFC NE++V            W+C+
Sbjct: 415 TFWRYSPSSPADGSTITESGNLSEIESRLPKSKLILFCKNESIV-----------KWMCN 463

Query: 191 CNHL 202
           C+H+
Sbjct: 464 CDHM 467


>tr|B6MDZ1|B6MDZ1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_81254 PE=4 SV=1
          Length = 998

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = -3

Query: 475 YRTKSSLARDLQWYKGLWPVVMPLSHLHWLAMQEVVMRNKGQLTQEEDDWQKVRMLASSG 296
           ++TK  +  DL+    + P+++ L    W+  + +  R   +  +EE D +K+ M     
Sbjct: 8   WKTKKKMLDDLEVGNKITPILIDLLQRKWVGPRALAGRFFSKKDEEEQDQEKIIMDKDGA 67

Query: 295 HKALML 278
           HKA +L
Sbjct: 68  HKAYIL 73


>tr|Q1E5G0|Q1E5G0_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_02203 PE=4 SV=1
          Length = 508

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
 Frame = +3

Query: 54  LRLHLNK------I*TIPTKGFHQPPTI---FFAMRMWFSISTM*LIICSLGSAIVITWK 206
           L LH N+      I T+ +  F  P T+   F   R+WFS++T+   + +LG+A V TW+
Sbjct: 101 LSLHGNRFSVSIFIFTVSSIVFQLPSTLAVRFVGPRLWFSMTTVCFGLITLGTAFVKTWQ 160

Query: 207 KV 212
           ++
Sbjct: 161 QM 162