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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921247
Clone id YMU001_000147_D10
Library
Length 328
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTCAATGCGCAAATATTGTATATACAATTGTGTGATGTCAATTAT
ACAAGGCATTGGGCTCAAGCTTTTGCTTCATGACTGGTGTGCAGTCATCACAACGGGTAA
TGCCAAAGATTTTCGGGCCTGTTCATTGCATCCTCTTTTAAGTACTCAAATTCCTCATTC
GCCCTTACATCTTTGTTGCTTTTCCGACAATCAATGCTTTTCCGCCAATCAACCAAAAAT
TCAAATGCTTTCTTCAGCATTAACTTACACCTCCCCAAGGCTCAACACAGCCCTTTGTTG
AATTTGAGCTATAATCTTCAGTATTAAA
■■Homology search results ■■ -
sp_hit_id Q8FFM5
Definition sp|Q8FFM5|NUDI_ECOL6 Nucleoside triphosphatase nudI OS=Escherichia coli O6
Align length 34
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921247|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_D10.
         (311 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8FFM5|NUDI_ECOL6 Nucleoside triphosphatase nudI OS=Escherich...    33   0.34 
sp|Q0TFJ1|NUDI_ECOL5 Nucleoside triphosphatase nudI OS=Escherich...    33   0.34 
sp|Q3YZV5|NUDI_SHISS Nucleoside triphosphatase nudI OS=Shigella ...    32   0.98 
sp|Q83KB9|NUDI_SHIFL Nucleoside triphosphatase nudI OS=Shigella ...    32   0.98 
sp|Q0T2N2|NUDI_SHIF8 Nucleoside triphosphatase nudI OS=Shigella ...    32   0.98 
sp|Q1R9G4|NUDI_ECOUT Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|B1LLK5|NUDI_ECOSM Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|P52006|NUDI_ECOLI Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|B1IXT6|NUDI_ECOLC Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|A1ADA3|NUDI_ECOK1 Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|A8A2B8|NUDI_ECOHS Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|B1X8W4|NUDI_ECODH Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|Q8XE00|NUDI_ECO57 Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|A7ZP69|NUDI_ECO24 Nucleoside triphosphatase nudI OS=Escherich...    32   0.98 
sp|Q6GQ70|S35B1_XENLA Solute carrier family 35 member B1 OS=Xeno...    29   8.3  

>sp|Q8FFM5|NUDI_ECOL6 Nucleoside triphosphatase nudI OS=Escherichia
           coli O6 GN=nudI PE=3 SV=1
          Length = 141

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N+DV+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANRDVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|Q0TFJ1|NUDI_ECOL5 Nucleoside triphosphatase nudI OS=Escherichia
           coli O6:K15:H31 (strain 536 / UPEC) GN=nudI PE=3 SV=1
          Length = 141

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N+DV+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANRDVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|Q3YZV5|NUDI_SHISS Nucleoside triphosphatase nudI OS=Shigella
           sonnei (strain Ss046) GN=nudI PE=3 SV=1
          Length = 141

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N++V+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANREVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|Q83KB9|NUDI_SHIFL Nucleoside triphosphatase nudI OS=Shigella
           flexneri GN=nudI PE=3 SV=5
          Length = 141

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N++V+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANREVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|Q0T2N2|NUDI_SHIF8 Nucleoside triphosphatase nudI OS=Shigella
           flexneri serotype 5b (strain 8401) GN=nudI PE=3 SV=2
          Length = 141

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N++V+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANREVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|Q1R9G4|NUDI_ECOUT Nucleoside triphosphatase nudI OS=Escherichia
           coli (strain UTI89 / UPEC) GN=nudI PE=3 SV=1
          Length = 141

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N++V+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANREVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|B1LLK5|NUDI_ECOSM Nucleoside triphosphatase nudI OS=Escherichia
           coli (strain SMS-3-5 / SECEC) GN=nudI PE=3 SV=2
          Length = 141

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N++V+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANREVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|P52006|NUDI_ECOLI Nucleoside triphosphatase nudI OS=Escherichia
           coli (strain K12) GN=nudI PE=1 SV=2
          Length = 141

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N++V+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANREVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|B1IXT6|NUDI_ECOLC Nucleoside triphosphatase nudI OS=Escherichia
           coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nudI PE=3
           SV=1
          Length = 141

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N++V+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANREVKINEEFQ---DYAWVKPEDLVHYDL 127


>sp|A1ADA3|NUDI_ECOK1 Nucleoside triphosphatase nudI OS=Escherichia
           coli O1:K1 / APEC GN=nudI PE=3 SV=1
          Length = 141

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N++V+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANREVKINEEFQ---DYAWVKPEDLVHYDL 127
tr_hit_id O17617
Definition tr|O17617|O17617_CAEEL Protein C29F7.5, partially confirmed by transcript evidence OS=Caenorhabditis elegans
Align length 64
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921247|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_D10.
         (311 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O17617|O17617_CAEEL Protein C29F7.5, partially confirmed by t...    34   4.2  
tr|B7MXT2|B7MXT2_ECOLX Putative NUDIX hydrolase OS=Escherichia c...    33   5.5  
tr|B3HLU4|B3HLU4_ECOLX Hydrolase, NUDIX family OS=Escherichia co...    33   5.5  
tr|A1Z7D7|A1Z7D7_DROME CG30364 OS=Drosophila melanogaster GN=CG3...    33   9.3  

>tr|O17617|O17617_CAEEL Protein C29F7.5, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=fkh-4
           PE=2 SV=1
          Length = 722

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 119 GLFIASSFKYSNSSFALTSLLLFRQSMLFRQSTKNSNAFFSINLHLPKAQHSPL-LNLSY 295
           G+  A  F+ +  +F L  L LF   +LF   + + N +F  N ++   Q+SPL  + S 
Sbjct: 272 GINRAEEFEKNLYTFLLHCLELFAIILLFAMQSNDENIYFPANQYVNAGQYSPLQQSFSQ 331

Query: 296 NLQY 307
           N QY
Sbjct: 332 NSQY 335


>tr|B7MXT2|B7MXT2_ECOLX Putative NUDIX hydrolase OS=Escherichia coli
           GN=yfaO PE=4 SV=1
          Length = 141

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N+DV+ NEEF+   + A  +PE+L HY L
Sbjct: 97  DCVSANRDVKINEEFQ---DYAWVKPEDLVHYDL 127


>tr|B3HLU4|B3HLU4_ECOLX Hydrolase, NUDIX family OS=Escherichia coli
           F11 GN=EcF11_1220 PE=4 SV=1
          Length = 120

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 DCRKSNKDVRANEEFEYLKEDAMNRPENLWHYPL 94
           DC  +N+DV+ NEEF+   + A  +PE+L HY L
Sbjct: 76  DCVSANRDVKINEEFQ---DYAWVKPEDLVHYDL 106


>tr|A1Z7D7|A1Z7D7_DROME CG30364 OS=Drosophila melanogaster
           GN=CG30364 PE=4 SV=1
          Length = 291

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 192 CRKSNKDVRANEEFEYLKEDAMNRPENLWHYP 97
           C   +K  +    ++  K+D  NRPE +WHYP
Sbjct: 88  CADPSKKTKFVSMWKRYKDDGSNRPEAMWHYP 119