NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921255
Clone id YMU001_000147_E08
Library
Length 212
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAATGCGCAAAGCTCTCTGAGGGAAGTCCTTTTGTAAGTAGATCAGCAGGATTTTCTGT
GGTGTGAACTTTGACAAGCTGAATTTGCTTATCCTCGAGCATTACCCTGATGAAATGATA
CTTCACATCCACATGCTTTGTCTTTGAGTGATAAACTGGATTGCGAGCCAGTTGTATAGC
ACTCTGACTATCACAATATAACACGGGCATCT
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 65
Score (bit) 89.7
E-value 4.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921255|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_E08.
         (212 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    90   4e-18
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    59   1e-08
sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein OS=Sa...    40   0.003
sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein OS=Sa...    40   0.003
sp|Q9D1Q6|TXND4_MOUSE Thioredoxin domain-containing protein 4 OS...    29   6.4  
sp|Q9BS26|TXND4_HUMAN Thioredoxin domain-containing protein 4 OS...    29   8.3  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 36/65 (55%), Positives = 55/65 (84%)
 Frame = -3

Query: 204  VLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGL 25
            V+YCDSQSAI L++N +YH++TKH+DV+YH+IR M++D+ ++++K+ T ENPAD+LTK +
Sbjct: 1252 VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVV 1311

Query: 24   PSESF 10
            P   F
Sbjct: 1312 PRNKF 1316


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 26/64 (40%), Positives = 38/64 (59%)
 Frame = -3

Query: 201  LYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGLP 22
            +Y D+Q  I +A NP  H + KH+D+KYHF R  +++  I L  + T    AD+ TK LP
Sbjct: 1328 IYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLP 1387

Query: 21   SESF 10
            +  F
Sbjct: 1388 AARF 1391


>sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY4B-J PE=2 SV=2
          Length = 1803

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = -3

Query: 204  VLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGL 25
            V+  DS+ AIQ         K K   +K   I+  +++K I+L+K+    N ADLLTK +
Sbjct: 1717 VMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPV 1776

Query: 24   PSESFAHF 1
             +  F  F
Sbjct: 1777 SASDFKRF 1784


>sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY4B-H PE=2 SV=1
          Length = 1802

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 23/68 (33%), Positives = 35/68 (51%)
 Frame = -3

Query: 204  VLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGL 25
            V+  DS+ AIQ         K K   +K   I+  +++K I+L+K+    N ADLLTK +
Sbjct: 1716 VMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPV 1775

Query: 24   PSESFAHF 1
             +  F  F
Sbjct: 1776 SASDFKRF 1783


>sp|Q9D1Q6|TXND4_MOUSE Thioredoxin domain-containing protein 4
           OS=Mus musculus GN=Txndc4 PE=1 SV=1
          Length = 406

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -3

Query: 168 ARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGLP 22
           A + VY     + DV Y++I    +DK + LV+  T EN  +L  +GLP
Sbjct: 218 APDMVYLGSMTNFDVTYNWI----QDKCVPLVREITFENGEELTEEGLP 262


>sp|Q9BS26|TXND4_HUMAN Thioredoxin domain-containing protein 4
           OS=Homo sapiens GN=TXNDC4 PE=1 SV=1
          Length = 406

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -3

Query: 168 ARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGLP 22
           A + VY     + DV Y++I    +DK + LV+  T EN  +L  +GLP
Sbjct: 218 APDMVYLGAMTNFDVTYNWI----QDKCVPLVREITFENGEELTEEGLP 262
tr_hit_id Q7M1E4
Definition tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase homolog (Fragment) OS=Arabidopsis thaliana
Align length 65
Score (bit) 89.7
E-value 7.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921255|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_E08.
         (212 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase ...    90   7e-17
tr|A5BE52|A5BE52_VITVI Putative uncharacterized protein OS=Vitis...    89   1e-16
tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O...    86   7e-16
tr|A5BPE6|A5BPE6_VITVI Putative uncharacterized protein OS=Vitis...    85   2e-15
tr|A5BT02|A5BT02_VITVI Putative uncharacterized protein OS=Vitis...    84   4e-15
tr|A5B4I5|A5B4I5_VITVI Putative uncharacterized protein OS=Vitis...    84   4e-15
tr|A5AHP3|A5AHP3_VITVI Putative uncharacterized protein OS=Vitis...    84   5e-15
tr|A5BET6|A5BET6_VITVI Putative uncharacterized protein OS=Vitis...    83   8e-15
tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4...    82   1e-14
tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab...    82   1e-14
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    82   1e-14
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    82   1e-14
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    82   1e-14
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    82   1e-14
tr|Q9FFM0|Q9FFM0_ARATH Copia-like retrotransposable element OS=A...    81   2e-14
tr|A5AKQ1|A5AKQ1_VITVI Putative uncharacterized protein OS=Vitis...    81   3e-14
tr|A5ACQ7|A5ACQ7_VITVI Putative uncharacterized protein OS=Vitis...    81   3e-14
tr|Q9M1F5|Q9M1F5_ARATH Copia-like polyprotein OS=Arabidopsis tha...    80   4e-14
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE...    80   4e-14
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis...    80   4e-14
tr|Q9SH77|Q9SH77_ARATH Putative retroelement pol polyprotein OS=...    80   7e-14
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE...    79   9e-14
tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarp...    79   9e-14
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    79   9e-14
tr|A5BJ23|A5BJ23_VITVI Putative uncharacterized protein OS=Vitis...    79   9e-14
tr|Q5GA69|Q5GA69_SOLLC Putative polyprotein OS=Solanum lycopersi...    79   1e-13
tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-co...    79   1e-13
tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-co...    79   1e-13
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13
tr|A5CAL2|A5CAL2_VITVI Putative uncharacterized protein OS=Vitis...    79   1e-13

>tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase
           homolog (Fragment) OS=Arabidopsis thaliana PE=4 SV=1
          Length = 112

 Score = 89.7 bits (221), Expect = 7e-17
 Identities = 36/65 (55%), Positives = 55/65 (84%)
 Frame = -3

Query: 204 VLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGL 25
           V+YCDSQSAI L++N +YH++TKH+DV+YH+IR M++D+ ++++K+ T ENPAD+LTK +
Sbjct: 36  VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVV 95

Query: 24  PSESF 10
           P   F
Sbjct: 96  PRNKF 100


>tr|A5BE52|A5BE52_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_039063 PE=4 SV=1
          Length = 1643

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 39/68 (57%), Positives = 53/68 (77%)
 Frame = -3

Query: 207  PVLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKG 28
            PV+YCDSQSA+ LA+NPVYH +TKH+DV+ +FIR ++E+K   + KV T  NPAD+LTK 
Sbjct: 1558 PVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLTKP 1617

Query: 27   LPSESFAH 4
            + +E F H
Sbjct: 1618 ITTEKFKH 1625


>tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=At2g19840 PE=2 SV=1
          Length = 1137

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 36/64 (56%), Positives = 51/64 (79%)
 Frame = -3

Query: 201  LYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGLP 22
            ++CDSQSAI LA+N VYH +TKH+DVKYHFIR ++ + ++Q++K+ T +NPAD+ TK LP
Sbjct: 1062 IHCDSQSAIALAKNAVYHERTKHIDVKYHFIRDLVNNGEVQVLKIDTEDNPADIFTKVLP 1121

Query: 21   SESF 10
               F
Sbjct: 1122 VSKF 1125


>tr|A5BPE6|A5BPE6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044177 PE=4 SV=1
          Length = 950

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 38/68 (55%), Positives = 52/68 (76%)
 Frame = -3

Query: 207 PVLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKG 28
           PV+YCDSQSA+ LA+N VYH +TKH+DV+ +FIR ++E+K   + KV T  NPAD+LTK 
Sbjct: 695 PVIYCDSQSALCLAKNLVYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLTKP 754

Query: 27  LPSESFAH 4
           + +E F H
Sbjct: 755 ITTEKFKH 762


>tr|A5BT02|A5BT02_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020397 PE=4 SV=1
          Length = 215

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 37/66 (56%), Positives = 51/66 (77%)
 Frame = -3

Query: 201 LYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGLP 22
           LYCDSQSAI LA+N VYH++TKH+DV++H I+ ++   ++ L KVHT+EN AD+LTK + 
Sbjct: 140 LYCDSQSAIYLAKNQVYHARTKHIDVRFHKIKELVSSGELLLEKVHTSENAADMLTKPVT 199

Query: 21  SESFAH 4
            E F H
Sbjct: 200 IEKFKH 205


>tr|A5B4I5|A5B4I5_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_038665 PE=4 SV=1
          Length = 1562

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 37/64 (57%), Positives = 51/64 (79%)
 Frame = -3

Query: 207  PVLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKG 28
            PV+YCDSQSA+ LA+NPVYH +TKH+DV+ +FIR ++E+K   + KV T  NPAD+LTK 
Sbjct: 1321 PVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLTKP 1380

Query: 27   LPSE 16
            + +E
Sbjct: 1381 ITTE 1384


>tr|A5AHP3|A5AHP3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005692 PE=4 SV=1
          Length = 218

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 36/63 (57%), Positives = 50/63 (79%)
 Frame = -3

Query: 204 VLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGL 25
           +LYCDSQSAI L +NP +HSK+KH+D++YH+IR  LE K   L K+HT EN +D++TK +
Sbjct: 120 LLYCDSQSAIHLNKNPTFHSKSKHIDLRYHWIRDALEMKLFYLEKIHTDENGSDMMTKPI 179

Query: 24  PSE 16
           P+E
Sbjct: 180 PTE 182


>tr|A5BET6|A5BET6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013728 PE=4 SV=1
          Length = 174

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 35/66 (53%), Positives = 53/66 (80%)
 Frame = -3

Query: 210 MPVLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTK 31
           M +LYCDSQS+I L++NP +HS++KH+DV+YH+IR  LE K   + K+HT EN +D++TK
Sbjct: 94  MYLLYCDSQSSIHLSKNPTFHSRSKHIDVRYHWIRDALEIKLFCVEKIHTDENGSDMMTK 153

Query: 30  GLPSES 13
            +P+E+
Sbjct: 154 PIPTEN 159


>tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4 SV=1
          Length = 1328

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 33/65 (50%), Positives = 54/65 (83%)
 Frame = -3

Query: 204  VLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGL 25
            V+YC+SQSA+ L++  +YH+ TKH+D++YH+IR M++D  +Q+VK+ T+ENPAD++TK +
Sbjct: 1252 VVYCESQSAMDLSKKAMYHATTKHIDMRYHWIREMVDDGSLQVVKIPTSENPADMVTKVV 1311

Query: 24   PSESF 10
             +E F
Sbjct: 1312 QNEKF 1316


>tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tabacum
            PE=4 SV=1
          Length = 1338

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 36/64 (56%), Positives = 51/64 (79%)
 Frame = -3

Query: 201  LYCDSQSAIQLARNPVYHSKTKHVDVKYHFIRVMLEDKQIQLVKVHTTENPADLLTKGLP 22
            L+CDSQSAI LA+N  +HS++KH+DV+Y++IR +LE K ++L K+HT EN +D+LTK LP
Sbjct: 1254 LFCDSQSAIHLAKNASFHSRSKHIDVRYNWIRDVLEKKMLRLEKIHTDENGSDMLTKTLP 1313

Query: 21   SESF 10
               F
Sbjct: 1314 KGKF 1317