BP921263
Clone id YMU001_000147_F05
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CGGCCAACAAGAAGGATCTGGTTTTCTGTTGCCCCCAATACTAGTACCACTGGTACATGA
TTTCTCTTCTTGGGGTACACTGGTTGTCTCCACTCTAGCTGGTTCAACATTGGTAAATGC
CACTACTGACATATCCTTTCCCTTCTTGAAGCGATGAATGCGAATGCCACAATTGTTACA
TAAATGAACATATGCTTTGCAATAGGTACATTAACACTCATTGGAAACATGATCTTTAGA
TTTGCACCTTGAGCACCAAGTTTCCATTCTCCTAATAACTGGTTTTCTGGTTTGGCTGAT
TTCAGCATTTTTGCCGGGCCATTTCATCATTTTTTCTAGACCAAGACCCCTTCTTAGCCT
TGTCCTTGGTTTTCTCATCTGAACCGCTGTCAGATCTGCTGGAAGTTGCACTAGAATCAG
AATTCTCAGAAGAAGAACTGCTGCTACTGGATCTCCTCTTCTTATGGCTTCTCTCCTTTT
TAGCTTGCTGTTCGAGTCTCTGCACTAG
■■Homology search results ■■ -
sp_hit_id O21281
Definition sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS=Reclinomonas americana
Align length 46
Score (bit) 31.6
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921263|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_F05.
(508 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS... 32 2.3
sp|Q8AVK2|LN28B_XENLA Lin-28 homolog B (Fragment) OS=Xenopus lae... 32 2.3
sp|Q803L0|LN28A_DANRE Lin-28 homolog A OS=Danio rerio GN=lin28 P... 32 2.3
sp|Q5DTT3|CJ018_MOUSE Uncharacterized protein C10orf18 homolog O... 31 3.9
sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28... 30 5.0
sp|Q1PRL4|LIN41_CHICK Tripartite motif-containing protein 71 OS=... 30 5.0
sp|Q8CJ69|BMPER_MOUSE BMP-binding endothelial regulator protein ... 30 5.0
sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus g... 30 6.5
sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b... 30 6.6
sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B... 30 6.6
sp|P22881|RP54_RHISN RNA polymerase sigma-54 factor OS=Rhizobium... 30 8.4
sp|Q8N8U9|BMPER_HUMAN BMP-binding endothelial regulator protein ... 30 8.6

>sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial
OS=Reclinomonas americana GN=RPL32 PE=3 SV=1
Length = 62

Score = 31.6 bits (70), Expect = 2.3
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = -2

Query: 288 RKPVI--RRMETWCSRCKSKDHVSNEC*CTYC---KAYVHLCNNCG 166
RKP + R++ R + K ++SN C +C K H+CNNCG
Sbjct: 6 RKPSVSRRKIRNVFIRAEMKKNLSNYSICKHCNYVKKKHHICNNCG 51


>sp|Q8AVK2|LN28B_XENLA Lin-28 homolog B (Fragment) OS=Xenopus laevis
GN=lin28b PE=2 SV=1
Length = 252

Score = 31.6 bits (70), Expect = 2.3
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Frame = -2

Query: 318 PGKNAEISQTRKPVIRRMETW------CSRCKSKDHVSNEC*-------CTYCKAYVHLC 178
PG N + R+P + ++ C C DH + EC C YC++ +H+
Sbjct: 105 PGGNPCLGSERRPKAKTVQKRKPKGDRCYNCGGLDHHAKECNLPPQPKKCHYCQSTMHMV 164

Query: 177 NNCGIRI 157
NC +I
Sbjct: 165 ANCPHKI 171


>sp|Q803L0|LN28A_DANRE Lin-28 homolog A OS=Danio rerio GN=lin28 PE=1
SV=1
Length = 202

Score = 31.6 bits (70), Expect = 2.3
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Frame = -2

Query: 354 RRGLGLEKM-MKWPGKNAEISQTRKPV----IRRMETWCSRCKSKDHVSNEC*------- 211
R GLE + + PG + +KP R C C +H + EC
Sbjct: 93 RSSKGLESLQVTGPGGAPCVGSEKKPKGTQKRRSKGDRCFNCGGPNHHAKECQLPPQPKK 152

Query: 210 CTYCKAYVHLCNNCGIRIHRFKKGKDMSVVAFTNVEPARVETTSVPQ 70
C +C++ H+ NC I+ + G T E T +P+
Sbjct: 153 CHFCQSISHMVANCPIKAQQLSPGSQGKSTTSTGEEEDMSHTPLLPE 199


>sp|Q5DTT3|CJ018_MOUSE Uncharacterized protein C10orf18 homolog OS=Mus
musculus GN=Kiaa2006 PE=2 SV=2
Length = 2382

Score = 30.8 bits (68), Expect = 3.9
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Frame = -2

Query: 345 LGLEKMMKWPGKNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC*CTYC--KAYVHLCNN 172
+G M +PG N + P R +E C + K+ + EC + +++ CN
Sbjct: 857 IGHATNMTFPGPNRVLPFINPPTTRDLEL-CVQNDQKEVFTGECHLDTSGNQNFIYSCNT 915

Query: 171 ---CGIRIHRFKKGKDMSVVAFTNVEPARVETTSVPQEEKSCTSGTSIGGN 28
G + S V + V A+ T +P E+K+C S + N
Sbjct: 916 EVTGGKTKQELSNKLETSNVVLSGVVSAQSHGTCIPSEDKTCQSTKMVSYN 966


>sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28B
PE=2 SV=1
Length = 250

Score = 30.4 bits (67), Expect = 5.0
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = -2

Query: 345 LGLEKMMKWPGKNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC*-------CTYCKAYV 187
LG E+ K GK Q RKP R C C DH + EC C YC++ +
Sbjct: 108 LGSERRPK--GKTV---QKRKPKGDR----CYNCGGLDHHAKECSLPPQPKKCHYCQSIM 158

Query: 186 HLCNNC 169
H+ NC
Sbjct: 159 HMVANC 164


>sp|Q1PRL4|LIN41_CHICK Tripartite motif-containing protein 71
OS=Gallus gallus GN=TRIM71 PE=2 SV=1
Length = 876

Score = 30.4 bits (67), Expect = 5.0
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2

Query: 288 RKPVIRRMETWCSRCKSKDHVSNEC*CTYCKAYVHLCNNCGIRIH-RFKKGKDMSVVAF 115
R+P R+ E CS C + S+ C HLC+NC +R H R + KD + F
Sbjct: 194 RRPHSRQGEPRCSSCDEGNAASSRC----LDCQEHLCDNC-VRAHQRVRLTKDHFIERF 247


>sp|Q8CJ69|BMPER_MOUSE BMP-binding endothelial regulator protein
OS=Mus musculus GN=Bmper PE=1 SV=1
Length = 685

Score = 30.4 bits (67), Expect = 5.0
Identities = 27/116 (23%), Positives = 39/116 (33%)
Frame = -2

Query: 366 RTRLRRGLGLEKMMKWPGKNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC*CTYCKAYV 187
+ +LR +K+ W + + R T C V C C AY
Sbjct: 551 KVKLRAHRECQKLKSWEFQTCHSTVDYTTFYRSCVTDMCECP----VHKNCYCESFLAYT 606

Query: 186 HLCNNCGIRIHRFKKGKDMSVVAFTNVEPARVETTSVPQEEKSCTSGTSIGGNRKP 19
C GI++H + A T + V T P K+C + IG KP
Sbjct: 607 RACQREGIKVH----WEPQQSCAATQCKHGAVYDTCGPGCVKTCDNWNEIGPCNKP 658


>sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus
gallus GN=NPY2R PE=3 SV=1
Length = 385

Score = 30.0 bits (66), Expect = 6.5
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -3

Query: 278 LLGEWKLGAQGANLKIMFPMSVNVPIAKHMFIYVTIVAFAFIASRRERICQ*WHL 114
LLGEWKLG +L VP A+ + ++V+ V IA R R C +HL
Sbjct: 116 LLGEWKLGPVLCHL---------VPYAQALAVHVSTVTLTVIALDRHR-CIVYHL 160


>sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b
PE=2 SV=2
Length = 247

Score = 30.0 bits (66), Expect = 6.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = -2

Query: 294 QTRKPVIRRMETWCSRCKSKDHVSNEC*-------CTYCKAYVHLCNNC 169
Q RKP R C C DH + EC C YC++ +H+ NC
Sbjct: 118 QKRKPKGDR----CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 162


>sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B
PE=1 SV=1
Length = 250

Score = 30.0 bits (66), Expect = 6.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = -2

Query: 294 QTRKPVIRRMETWCSRCKSKDHVSNEC*-------CTYCKAYVHLCNNC 169
Q RKP R C C DH + EC C YC++ +H+ NC
Sbjct: 120 QKRKPKGDR----CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164


tr_hit_id A9RJK7
Definition tr|A9RJK7|A9RJK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 96
Score (bit) 40.4
E-value 0.05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921263|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_F05.
(508 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RJK7|A9RJK7_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.050
tr|Q1RLG8|Q1RLG8_CIOIN Zinc finger protein (Fragment) OS=Ciona i... 39 0.11
tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.19
tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.32
tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.32
tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.42
tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.42
tr|A9TGZ9|A9TGZ9_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.42
tr|A9SUH5|A9SUH5_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.42
tr|A9SLY4|A9SLY4_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.55
tr|A9RDG2|A9RDG2_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.55
tr|A5C6R1|A5C6R1_VITVI Putative uncharacterized protein OS=Vitis... 37 0.55
tr|B0DGY3|B0DGY3_LACBS Predicted protein OS=Laccaria bicolor (st... 37 0.55
tr|A9TU30|A9TU30_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.72
tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.72
tr|A9TNC9|A9TNC9_PHYPA Predicted protein OS=Physcomitrella paten... 36 0.94
tr|A9TQN9|A9TQN9_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9S9W6|A9S9W6_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9S0S6|A9S0S6_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2
tr|A9TXK5|A9TXK5_PHYPA Predicted protein OS=Physcomitrella paten... 33 1.5
tr|A9S5V5|A9S5V5_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.6
tr|A9RUU5|A9RUU5_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.6
tr|A7QJS1|A7QJS1_VITVI Chromosome undetermined scaffold_107, who... 35 1.6
tr|B0DZP3|B0DZP3_LACBS Predicted protein OS=Laccaria bicolor (st... 35 1.6
tr|B0DU07|B0DU07_LACBS Predicted protein OS=Laccaria bicolor (st... 35 1.6
tr|A9TZ16|A9TZ16_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.1
tr|A9SQD2|A9SQD2_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.1
tr|A9RMX5|A9RMX5_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.1
tr|B0DP58|B0DP58_LACBS Predicted protein OS=Laccaria bicolor (st... 35 2.1
tr|A1C7P9|A1C7P9_ASPCL C6 transcription factor, putative OS=Aspe... 35 2.1

>tr|A9RJK7|A9RJK7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66986 PE=4 SV=1
Length = 462

Score = 40.4 bits (93), Expect = 0.050
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Frame = -2

Query: 285 KPVIRRMETWCSRCKSKDHVSNEC*CTYCKAYVHLCNNCGIRIHRFKKGKDM-----SVV 121
KP R WCS CK + H+ E C+ + C CG+ +KGK+ +
Sbjct: 320 KPTNMRPNVWCSNCKGQGHLVTE--CSSPPQIMVQCTFCGVLTRGQQKGKNPIQDLDDPI 377

Query: 120 AFTNVEPARVETTSV----------PQEEKSCTSGT 43
T V P+ T S+ PQ+++ TSG+
Sbjct: 378 EVTTVAPSMRRTESISVLKCIPILSPQQDEEPTSGS 413


>tr|Q1RLG8|Q1RLG8_CIOIN Zinc finger protein (Fragment) OS=Ciona
intestinalis GN=Ci-ZF(CCHC)-6 PE=2 SV=1
Length = 399

Score = 39.3 bits (90), Expect = 0.11
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2

Query: 255 CSRCKSKDHVSNEC*CTYCKAYVHLCNNC 169
C CK + HV C CTYCK H+ NC
Sbjct: 200 CRFCKERGHVQTRCFCTYCKIEGHITKNC 228


>tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_79949 PE=4 SV=1
Length = 229

Score = 38.5 bits (88), Expect = 0.19
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Frame = -2

Query: 345 LGLEKMMKWPGKNA--EISQTRKPVIRRMETWCSRCKSKDHVSNEC--------*CTYCK 196
L L K MK N + + +KP R WCS C+ DH+ EC CT+C
Sbjct: 120 LNLTKKMKEMAINMAKDKEKRQKPTNTRTNVWCSNCEGHDHLVTECPSPSQVLGKCTFCG 179

Query: 195 AYVHLCNNC 169
HL NC
Sbjct: 180 G-KHLTANC 187


>tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_101413 PE=4 SV=1
Length = 702

Score = 37.7 bits (86), Expect = 0.32
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Frame = -2

Query: 285 KPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNCGIRIHRFKKGKDM 130
KP R WCS CK +DH+ EC CT+C + N +R + + M
Sbjct: 102 KPTNMRPNVWCSNCKEQDHLVTECSSPPQMMVQCTFCGSKHTTANCWNLRKQQQVGQQTM 161

Query: 129 SVVAFTNVEPARVETTSVPQEEK 61
S N++ TS P E+K
Sbjct: 162 SQPTSWNMQ------TSQPAEDK 178


>tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_68907 PE=4 SV=1
Length = 192

Score = 37.7 bits (86), Expect = 0.32
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Frame = -2

Query: 345 LGLEKMMKWPGKNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAY 190
L L K M+ N + KP + WCS CK H+ EC CT+C
Sbjct: 116 LNLMKKMEEMVVNMAKDKRHKPTNTKTNVWCSNCKDHGHLVTECPSPSQMIGQCTFCGG- 174

Query: 189 VHLCNNC 169
HL NC
Sbjct: 175 KHLTTNC 181


>tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_103131 PE=4 SV=1
Length = 201

Score = 37.4 bits (85), Expect = 0.42
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Frame = -2

Query: 285 KPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNC 169
KP R+ WCS CK + H+ EC CT+C H+ NC
Sbjct: 137 KPTNMRLNVWCSNCKGQGHLVTECPLPPQMTVQCTFCGG-KHITTNC 182


>tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_103130 PE=4 SV=1
Length = 201

Score = 37.4 bits (85), Expect = 0.42
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Frame = -2

Query: 285 KPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNC 169
KP R+ WCS CK + H+ EC CT+C H+ NC
Sbjct: 137 KPTNMRLNVWCSNCKGQGHLVTECPLPPQMTVQCTFCGG-KHITTNC 182


>tr|A9TGZ9|A9TGZ9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_92651 PE=4 SV=1
Length = 225

Score = 37.4 bits (85), Expect = 0.42
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = -2

Query: 288 RKPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNCGIRIHRFKKGKD 133
+KP R WCS C+ H+ EC CT+C HL NC + R ++ +
Sbjct: 16 QKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLTANCW-NLQRQQQFSN 73

Query: 132 MSVVAFTNVEPARVET 85
++++ T + +V+T
Sbjct: 74 LTMIPLTQWDVNQVQT 89


>tr|A9SUH5|A9SUH5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_84148 PE=4 SV=1
Length = 240

Score = 37.4 bits (85), Expect = 0.42
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = -2

Query: 285 KPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNCGIRIHRFKKGKDM 130
KP R WCS CK + H+ EC CT+C H+ NC + + ++
Sbjct: 17 KPTNMRPNVWCSNCKGQVHLVTECPSPPQMTVQCTFCGG-KHITTNCW-NLRKQQQLSHQ 74

Query: 129 SVVAFTNVEPARVETTSVPQEEK 61
+ T+ + ++ TS P+E+K
Sbjct: 75 IMTQPTSWDVNQLMQTSQPEEDK 97


>tr|A9SLY4|A9SLY4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_81181 PE=4 SV=1
Length = 289

Score = 37.0 bits (84), Expect = 0.55
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = -2

Query: 312 KNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNCGIRI 157
KN E +T+KP R W S CK DH+ EC CT+C HL NC +
Sbjct: 7 KNKE--KTQKPTNIRTNVWYSNCKDHDHLVTECPSPSQMMDQCTFCGG-KHLTANCW-NL 62

Query: 156 HR 151
HR
Sbjct: 63 HR 64