BP921263 |
Clone id |
YMU001_000147_F05 |
Library |
YMU01 |
Length |
508 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000147_F05. |
Accession |
BP921263 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CGGCCAACAAGAAGGATCTGGTTTTCTGTTGCCCCCAATACTAGTACCACTGGTACATGA TTTCTCTTCTTGGGGTACACTGGTTGTCTCCACTCTAGCTGGTTCAACATTGGTAAATGC CACTACTGACATATCCTTTCCCTTCTTGAAGCGATGAATGCGAATGCCACAATTGTTACA TAAATGAACATATGCTTTGCAATAGGTACATTAACACTCATTGGAAACATGATCTTTAGA TTTGCACCTTGAGCACCAAGTTTCCATTCTCCTAATAACTGGTTTTCTGGTTTGGCTGAT TTCAGCATTTTTGCCGGGCCATTTCATCATTTTTTCTAGACCAAGACCCCTTCTTAGCCT TGTCCTTGGTTTTCTCATCTGAACCGCTGTCAGATCTGCTGGAAGTTGCACTAGAATCAG AATTCTCAGAAGAAGAACTGCTGCTACTGGATCTCCTCTTCTTATGGCTTCTCTCCTTTT TAGCTTGCTGTTCGAGTCTCTGCACTAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O21281 |
Definition |
sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS=Reclinomonas americana |
Align length |
46 |
Score (bit) |
31.6 |
E-value |
2.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921263|Adiantum capillus-veneris mRNA, clone: YMU001_000147_F05. (508 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS... 32 2.3 sp|Q8AVK2|LN28B_XENLA Lin-28 homolog B (Fragment) OS=Xenopus lae... 32 2.3 sp|Q803L0|LN28A_DANRE Lin-28 homolog A OS=Danio rerio GN=lin28 P... 32 2.3 sp|Q5DTT3|CJ018_MOUSE Uncharacterized protein C10orf18 homolog O... 31 3.9 sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28... 30 5.0 sp|Q1PRL4|LIN41_CHICK Tripartite motif-containing protein 71 OS=... 30 5.0 sp|Q8CJ69|BMPER_MOUSE BMP-binding endothelial regulator protein ... 30 5.0 sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus g... 30 6.5 sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b... 30 6.6 sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B... 30 6.6 sp|P22881|RP54_RHISN RNA polymerase sigma-54 factor OS=Rhizobium... 30 8.4 sp|Q8N8U9|BMPER_HUMAN BMP-binding endothelial regulator protein ... 30 8.6
>sp|O21281|RM32_RECAM 60S ribosomal protein L32, mitochondrial OS=Reclinomonas americana GN=RPL32 PE=3 SV=1 Length = 62
Score = 31.6 bits (70), Expect = 2.3 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%) Frame = -2
Query: 288 RKPVI--RRMETWCSRCKSKDHVSNEC*CTYC---KAYVHLCNNCG 166 RKP + R++ R + K ++SN C +C K H+CNNCG Sbjct: 6 RKPSVSRRKIRNVFIRAEMKKNLSNYSICKHCNYVKKKHHICNNCG 51
>sp|Q8AVK2|LN28B_XENLA Lin-28 homolog B (Fragment) OS=Xenopus laevis GN=lin28b PE=2 SV=1 Length = 252
Score = 31.6 bits (70), Expect = 2.3 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 13/67 (19%) Frame = -2
Query: 318 PGKNAEISQTRKPVIRRMETW------CSRCKSKDHVSNEC*-------CTYCKAYVHLC 178 PG N + R+P + ++ C C DH + EC C YC++ +H+ Sbjct: 105 PGGNPCLGSERRPKAKTVQKRKPKGDRCYNCGGLDHHAKECNLPPQPKKCHYCQSTMHMV 164
Query: 177 NNCGIRI 157 NC +I Sbjct: 165 ANCPHKI 171
>sp|Q803L0|LN28A_DANRE Lin-28 homolog A OS=Danio rerio GN=lin28 PE=1 SV=1 Length = 202
Score = 31.6 bits (70), Expect = 2.3 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 12/107 (11%) Frame = -2
Query: 354 RRGLGLEKM-MKWPGKNAEISQTRKPV----IRRMETWCSRCKSKDHVSNEC*------- 211 R GLE + + PG + +KP R C C +H + EC Sbjct: 93 RSSKGLESLQVTGPGGAPCVGSEKKPKGTQKRRSKGDRCFNCGGPNHHAKECQLPPQPKK 152
Query: 210 CTYCKAYVHLCNNCGIRIHRFKKGKDMSVVAFTNVEPARVETTSVPQ 70 C +C++ H+ NC I+ + G T E T +P+ Sbjct: 153 CHFCQSISHMVANCPIKAQQLSPGSQGKSTTSTGEEEDMSHTPLLPE 199
>sp|Q5DTT3|CJ018_MOUSE Uncharacterized protein C10orf18 homolog OS=Mus musculus GN=Kiaa2006 PE=2 SV=2 Length = 2382
Score = 30.8 bits (68), Expect = 3.9 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 5/111 (4%) Frame = -2
Query: 345 LGLEKMMKWPGKNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC*CTYC--KAYVHLCNN 172 +G M +PG N + P R +E C + K+ + EC + +++ CN Sbjct: 857 IGHATNMTFPGPNRVLPFINPPTTRDLEL-CVQNDQKEVFTGECHLDTSGNQNFIYSCNT 915
Query: 171 ---CGIRIHRFKKGKDMSVVAFTNVEPARVETTSVPQEEKSCTSGTSIGGN 28 G + S V + V A+ T +P E+K+C S + N Sbjct: 916 EVTGGKTKQELSNKLETSNVVLSGVVSAQSHGTCIPSEDKTCQSTKMVSYN 966
>sp|Q45KJ4|LN28B_CHICK Lin-28 homolog B OS=Gallus gallus GN=LIN28B PE=2 SV=1 Length = 250
Score = 30.4 bits (67), Expect = 5.0 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Frame = -2
Query: 345 LGLEKMMKWPGKNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC*-------CTYCKAYV 187 LG E+ K GK Q RKP R C C DH + EC C YC++ + Sbjct: 108 LGSERRPK--GKTV---QKRKPKGDR----CYNCGGLDHHAKECSLPPQPKKCHYCQSIM 158
Query: 186 HLCNNC 169 H+ NC Sbjct: 159 HMVANC 164
>sp|Q1PRL4|LIN41_CHICK Tripartite motif-containing protein 71 OS=Gallus gallus GN=TRIM71 PE=2 SV=1 Length = 876
Score = 30.4 bits (67), Expect = 5.0 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -2
Query: 288 RKPVIRRMETWCSRCKSKDHVSNEC*CTYCKAYVHLCNNCGIRIH-RFKKGKDMSVVAF 115 R+P R+ E CS C + S+ C HLC+NC +R H R + KD + F Sbjct: 194 RRPHSRQGEPRCSSCDEGNAASSRC----LDCQEHLCDNC-VRAHQRVRLTKDHFIERF 247
>sp|Q8CJ69|BMPER_MOUSE BMP-binding endothelial regulator protein OS=Mus musculus GN=Bmper PE=1 SV=1 Length = 685
Score = 30.4 bits (67), Expect = 5.0 Identities = 27/116 (23%), Positives = 39/116 (33%) Frame = -2
Query: 366 RTRLRRGLGLEKMMKWPGKNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC*CTYCKAYV 187 + +LR +K+ W + + R T C V C C AY Sbjct: 551 KVKLRAHRECQKLKSWEFQTCHSTVDYTTFYRSCVTDMCECP----VHKNCYCESFLAYT 606
Query: 186 HLCNNCGIRIHRFKKGKDMSVVAFTNVEPARVETTSVPQEEKSCTSGTSIGGNRKP 19 C GI++H + A T + V T P K+C + IG KP Sbjct: 607 RACQREGIKVH----WEPQQSCAATQCKHGAVYDTCGPGCVKTCDNWNEIGPCNKP 658
>sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus gallus GN=NPY2R PE=3 SV=1 Length = 385
Score = 30.0 bits (66), Expect = 6.5 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = -3
Query: 278 LLGEWKLGAQGANLKIMFPMSVNVPIAKHMFIYVTIVAFAFIASRRERICQ*WHL 114 LLGEWKLG +L VP A+ + ++V+ V IA R R C +HL Sbjct: 116 LLGEWKLGPVLCHL---------VPYAQALAVHVSTVTLTVIALDRHR-CIVYHL 160
>sp|Q45KJ6|LN28B_MOUSE Lin-28 homolog B OS=Mus musculus GN=Lin28b PE=2 SV=2 Length = 247
Score = 30.0 bits (66), Expect = 6.6 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%) Frame = -2
Query: 294 QTRKPVIRRMETWCSRCKSKDHVSNEC*-------CTYCKAYVHLCNNC 169 Q RKP R C C DH + EC C YC++ +H+ NC Sbjct: 118 QKRKPKGDR----CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 162
>sp|Q6ZN17|LN28B_HUMAN Lin-28 homolog B OS=Homo sapiens GN=LIN28B PE=1 SV=1 Length = 250
Score = 30.0 bits (66), Expect = 6.6 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%) Frame = -2
Query: 294 QTRKPVIRRMETWCSRCKSKDHVSNEC*-------CTYCKAYVHLCNNC 169 Q RKP R C C DH + EC C YC++ +H+ NC Sbjct: 120 QKRKPKGDR----CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANC 164
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RJK7 |
Definition |
tr|A9RJK7|A9RJK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
96 |
Score (bit) |
40.4 |
E-value |
0.05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921263|Adiantum capillus-veneris mRNA, clone: YMU001_000147_F05. (508 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RJK7|A9RJK7_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.050 tr|Q1RLG8|Q1RLG8_CIOIN Zinc finger protein (Fragment) OS=Ciona i... 39 0.11 tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.19 tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.32 tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.32 tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.42 tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.42 tr|A9TGZ9|A9TGZ9_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.42 tr|A9SUH5|A9SUH5_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.42 tr|A9SLY4|A9SLY4_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.55 tr|A9RDG2|A9RDG2_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.55 tr|A5C6R1|A5C6R1_VITVI Putative uncharacterized protein OS=Vitis... 37 0.55 tr|B0DGY3|B0DGY3_LACBS Predicted protein OS=Laccaria bicolor (st... 37 0.55 tr|A9TU30|A9TU30_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.72 tr|A9TRA3|A9TRA3_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.72 tr|A9TNC9|A9TNC9_PHYPA Predicted protein OS=Physcomitrella paten... 36 0.94 tr|A9TQN9|A9TQN9_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2 tr|A9S9W6|A9S9W6_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2 tr|A9S0S6|A9S0S6_PHYPA Predicted protein OS=Physcomitrella paten... 36 1.2 tr|A9TXK5|A9TXK5_PHYPA Predicted protein OS=Physcomitrella paten... 33 1.5 tr|A9S5V5|A9S5V5_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.6 tr|A9RUU5|A9RUU5_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.6 tr|A7QJS1|A7QJS1_VITVI Chromosome undetermined scaffold_107, who... 35 1.6 tr|B0DZP3|B0DZP3_LACBS Predicted protein OS=Laccaria bicolor (st... 35 1.6 tr|B0DU07|B0DU07_LACBS Predicted protein OS=Laccaria bicolor (st... 35 1.6 tr|A9TZ16|A9TZ16_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.1 tr|A9SQD2|A9SQD2_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.1 tr|A9RMX5|A9RMX5_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.1 tr|B0DP58|B0DP58_LACBS Predicted protein OS=Laccaria bicolor (st... 35 2.1 tr|A1C7P9|A1C7P9_ASPCL C6 transcription factor, putative OS=Aspe... 35 2.1
>tr|A9RJK7|A9RJK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_66986 PE=4 SV=1 Length = 462
Score = 40.4 bits (93), Expect = 0.050 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Frame = -2
Query: 285 KPVIRRMETWCSRCKSKDHVSNEC*CTYCKAYVHLCNNCGIRIHRFKKGKDM-----SVV 121 KP R WCS CK + H+ E C+ + C CG+ +KGK+ + Sbjct: 320 KPTNMRPNVWCSNCKGQGHLVTE--CSSPPQIMVQCTFCGVLTRGQQKGKNPIQDLDDPI 377
Query: 120 AFTNVEPARVETTSV----------PQEEKSCTSGT 43 T V P+ T S+ PQ+++ TSG+ Sbjct: 378 EVTTVAPSMRRTESISVLKCIPILSPQQDEEPTSGS 413
>tr|Q1RLG8|Q1RLG8_CIOIN Zinc finger protein (Fragment) OS=Ciona intestinalis GN=Ci-ZF(CCHC)-6 PE=2 SV=1 Length = 399
Score = 39.3 bits (90), Expect = 0.11 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -2
Query: 255 CSRCKSKDHVSNEC*CTYCKAYVHLCNNC 169 C CK + HV C CTYCK H+ NC Sbjct: 200 CRFCKERGHVQTRCFCTYCKIEGHITKNC 228
>tr|A9SIP4|A9SIP4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_79949 PE=4 SV=1 Length = 229
Score = 38.5 bits (88), Expect = 0.19 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Frame = -2
Query: 345 LGLEKMMKWPGKNA--EISQTRKPVIRRMETWCSRCKSKDHVSNEC--------*CTYCK 196 L L K MK N + + +KP R WCS C+ DH+ EC CT+C Sbjct: 120 LNLTKKMKEMAINMAKDKEKRQKPTNTRTNVWCSNCEGHDHLVTECPSPSQVLGKCTFCG 179
Query: 195 AYVHLCNNC 169 HL NC Sbjct: 180 G-KHLTANC 187
>tr|A9U3M7|A9U3M7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_101413 PE=4 SV=1 Length = 702
Score = 37.7 bits (86), Expect = 0.32 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Frame = -2
Query: 285 KPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNCGIRIHRFKKGKDM 130 KP R WCS CK +DH+ EC CT+C + N +R + + M Sbjct: 102 KPTNMRPNVWCSNCKEQDHLVTECSSPPQMMVQCTFCGSKHTTANCWNLRKQQQVGQQTM 161
Query: 129 SVVAFTNVEPARVETTSVPQEEK 61 S N++ TS P E+K Sbjct: 162 SQPTSWNMQ------TSQPAEDK 178
>tr|A9RPR2|A9RPR2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_68907 PE=4 SV=1 Length = 192
Score = 37.7 bits (86), Expect = 0.32 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 8/67 (11%) Frame = -2
Query: 345 LGLEKMMKWPGKNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAY 190 L L K M+ N + KP + WCS CK H+ EC CT+C Sbjct: 116 LNLMKKMEEMVVNMAKDKRHKPTNTKTNVWCSNCKDHGHLVTECPSPSQMIGQCTFCGG- 174
Query: 189 VHLCNNC 169 HL NC Sbjct: 175 KHLTTNC 181
>tr|A9U6B9|A9U6B9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_103131 PE=4 SV=1 Length = 201
Score = 37.4 bits (85), Expect = 0.42 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%) Frame = -2
Query: 285 KPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNC 169 KP R+ WCS CK + H+ EC CT+C H+ NC Sbjct: 137 KPTNMRLNVWCSNCKGQGHLVTECPLPPQMTVQCTFCGG-KHITTNC 182
>tr|A9U6B8|A9U6B8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_103130 PE=4 SV=1 Length = 201
Score = 37.4 bits (85), Expect = 0.42 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%) Frame = -2
Query: 285 KPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNC 169 KP R+ WCS CK + H+ EC CT+C H+ NC Sbjct: 137 KPTNMRLNVWCSNCKGQGHLVTECPLPPQMTVQCTFCGG-KHITTNC 182
>tr|A9TGZ9|A9TGZ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_92651 PE=4 SV=1 Length = 225
Score = 37.4 bits (85), Expect = 0.42 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = -2
Query: 288 RKPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNCGIRIHRFKKGKD 133 +KP R WCS C+ H+ EC CT+C HL NC + R ++ + Sbjct: 16 QKPTNTRTNVWCSNCQGHGHLVTECPSPSQVLGKCTFCGG-KHLTANCW-NLQRQQQFSN 73
Query: 132 MSVVAFTNVEPARVET 85 ++++ T + +V+T Sbjct: 74 LTMIPLTQWDVNQVQT 89
>tr|A9SUH5|A9SUH5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_84148 PE=4 SV=1 Length = 240
Score = 37.4 bits (85), Expect = 0.42 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%) Frame = -2
Query: 285 KPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNCGIRIHRFKKGKDM 130 KP R WCS CK + H+ EC CT+C H+ NC + + ++ Sbjct: 17 KPTNMRPNVWCSNCKGQVHLVTECPSPPQMTVQCTFCGG-KHITTNCW-NLRKQQQLSHQ 74
Query: 129 SVVAFTNVEPARVETTSVPQEEK 61 + T+ + ++ TS P+E+K Sbjct: 75 IMTQPTSWDVNQLMQTSQPEEDK 97
>tr|A9SLY4|A9SLY4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_81181 PE=4 SV=1 Length = 289
Score = 37.0 bits (84), Expect = 0.55 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Frame = -2
Query: 312 KNAEISQTRKPVIRRMETWCSRCKSKDHVSNEC--------*CTYCKAYVHLCNNCGIRI 157 KN E +T+KP R W S CK DH+ EC CT+C HL NC + Sbjct: 7 KNKE--KTQKPTNIRTNVWYSNCKDHDHLVTECPSPSQMMDQCTFCGG-KHLTANCW-NL 62
Query: 156 HR 151 HR Sbjct: 63 HR 64
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