BP921274
Clone id YMU001_000147_G07
Library
Length 222
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000147_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAACGTAGCTTAATGATCGATGGGTGACTCTCCCTCGCGCAAAGAGAGAGAGAGAGAGAG
AGAGAGATCTATAAAAGCTGCAAGTGATCAGCAATGTCTCAATGTTTTCAACCCACCACA
AGGATCCCTAGAAGAATACAGTCGAGGGGACAGAAGCAACAACCGCTCCGTAAGACGAGT
AGAGTGGTAAATCTTCACTTCATTCTTCAGCAAGTGAGTATA
■■Homology search results ■■ -
sp_hit_id Q6DB58
Definition sp|Q6DB58|LIGB_ERWCT DNA ligase B OS=Erwinia carotovora subsp. atroseptica
Align length 27
Score (bit) 30.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921274|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_G07.
(222 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6DB58|LIGB_ERWCT DNA ligase B OS=Erwinia carotovora subsp. a... 30 3.7
sp|Q8ISC9|CSW_DROSI Tyrosine-protein phosphatase corkscrew (Frag... 29 6.3
sp|P29349|CSW_DROME Tyrosine-protein phosphatase corkscrew OS=Dr... 29 6.3
sp|Q63ZE4|S22AA_HUMAN Solute carrier family 22 member 10 OS=Homo... 29 6.3

>sp|Q6DB58|LIGB_ERWCT DNA ligase B OS=Erwinia carotovora subsp.
atroseptica GN=ligB PE=3 SV=1
Length = 563

Score = 30.0 bits (66), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1

Query: 97 SQCFQPTTRIPRRIQSRGQKQQPLRKT 177
SQCFQP IP R+ G++ P+ T
Sbjct: 77 SQCFQPQNVIPARLPDNGKQPHPVAHT 103


>sp|Q8ISC9|CSW_DROSI Tyrosine-protein phosphatase corkscrew
(Fragment) OS=Drosophila simulans GN=csw PE=3 SV=1
Length = 555

Score = 29.3 bits (64), Expect = 6.3
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1

Query: 28 LSLAQREREREREIYKS 78
+S+A+RERERERE++K+
Sbjct: 138 ISMAEREREREREMFKT 154


>sp|P29349|CSW_DROME Tyrosine-protein phosphatase corkscrew
OS=Drosophila melanogaster GN=csw PE=1 SV=2
Length = 845

Score = 29.3 bits (64), Expect = 6.3
Identities = 11/17 (64%), Positives = 17/17 (100%)
Frame = +1

Query: 28 LSLAQREREREREIYKS 78
+S+A+RERERERE++K+
Sbjct: 428 ISMAEREREREREMFKT 444


>sp|Q63ZE4|S22AA_HUMAN Solute carrier family 22 member 10 OS=Homo
sapiens GN=SLC22A10 PE=2 SV=1
Length = 531

Score = 29.3 bits (64), Expect = 6.3
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -3

Query: 163 VVASVPSTVFF*GSLWWVENIETLLIT 83
VVASVP VFF S W VE+ L+IT
Sbjct: 262 VVASVPFFVFFLLSRWLVESARWLIIT 288


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921274|Adiantum capillus-veneris mRNA, clone:
YMU001_000147_G07.
(222 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******