BP921278 |
Clone id |
YMU001_000147_G12 |
Library |
YMU01 |
Length |
241 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000147_G12. |
Accession |
BP921278 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4207Contig1 |
Sequence |
TCCTCAACGGCATCCTTTGTGATACCCCCAACGAACACTTCTGAGCCATGCGGAGGCCGC ACCAGTGGATCCTCAAAGCTCTCTTCCCCCCTCTCATCAGCCTGCTCCTTCTCTTGAGGA TGCGCTATTTCATCATGTGCAAGCTCTTATTGCACATCTGCATCCTTCTCAAACGTTTCT GTCTGATGAGCCTCCTCAGCCCCACCATAAGGAAGAATTTGAGGCTCCTCGTTCACATTC G |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P18488 |
Definition |
sp|P18488|EMS_DROME Homeotic protein empty spiracles OS=Drosophila melanogaster |
Align length |
78 |
Score (bit) |
34.7 |
E-value |
0.15 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T0W7 |
Definition |
tr|A9T0W7|A9T0W7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
67 |
Score (bit) |
47.4 |
E-value |
0.0004 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921278|Adiantum capillus-veneris mRNA, clone: YMU001_000147_G12. (241 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T0W7|A9T0W7_PHYPA Predicted protein OS=Physcomitrella paten... 47 4e-04 tr|A7QFA8|A7QFA8_VITVI Chromosome undetermined scaffold_87, whol... 44 0.005 tr|Q9LXJ8|Q9LXJ8_ARATH Putative RNA binding protein (At3g52660) ... 42 0.012 tr|Q2HTD6|Q2HTD6_MEDTR RNA-binding region RNP-1 (RNA recognition... 42 0.012 tr|Q9ASP6|Q9ASP6_ARATH AT4g00830/A_TM018A10_14 (Putative unchara... 42 0.015 tr|Q84VA8|Q84VA8_ORYSJ Putative RNA-binding protein (Fragment) O... 42 0.015 tr|Q2QY16|Q2QY16_ORYSJ RNA recognition motif family protein, exp... 42 0.015 tr|Q0IQ94|Q0IQ94_ORYSJ Os12g0136200 protein (Fragment) OS=Oryza ... 42 0.015 tr|O23093|O23093_ARATH A_TM018A10.14 protein (Putative uncharact... 42 0.015 tr|A3CER4|A3CER4_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.015 tr|A2ZHW4|A2ZHW4_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.015 tr|A2ZB89|A2ZB89_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.034 tr|B6U752|B6U752_MAIZE Heterogeneous nuclear ribonucleoprotein R... 40 0.044 tr|B4F9N8|B4F9N8_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.044 tr|A7PXS3|A7PXS3_VITVI Chromosome chr15 scaffold_37, whole genom... 40 0.044 tr|Q2RAS7|Q2RAS7_ORYSJ RNA recognition motif family protein, exp... 40 0.057 tr|A3C8G5|A3C8G5_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.057 tr|B4GNX8|B4GNX8_DROPE GL13771 OS=Drosophila persimilis GN=GL137... 37 0.37 tr|Q8W2R4|Q8W2R4_ORYSA Putative RNA-binding protein OS=Oryza sat... 37 0.64 tr|Q7XGR3|Q7XGR3_ORYSJ Os10g0151800 protein OS=Oryza sativa subs... 37 0.64 tr|Q33B10|Q33B10_ORYSJ cDNA clone:J013065B13, full insert sequen... 37 0.64 tr|Q2HS59|Q2HS59_MEDTR RNA-binding region RNP-1 (RNA recognition... 37 0.64 tr|B8BFR8|B8BFR8_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.64 tr|A9NVU4|A9NVU4_PICSI Putative uncharacterized protein OS=Picea... 37 0.64 tr|B4L401|B4L401_DROMO GI14953 OS=Drosophila mojavensis GN=GI149... 36 0.83 tr|Q5BIB4|Q5BIB4_DROME RE15812p OS=Drosophila melanogaster GN=em... 35 1.8 tr|A5HEG8|A5HEG8_MAIZE Putative growth-regulating factor 9 OS=Ze... 35 2.4 tr|A7RSP9|A7RSP9_NEMVE Predicted protein OS=Nematostella vectens... 35 2.4 tr|A2E241|A2E241_TRIVA Putative uncharacterized protein OS=Trich... 35 2.4 tr|Q5BJ08|Q5BJ08_DANRE Zgc:113499 OS=Danio rerio GN=eng1b PE=2 SV=1 35 2.4
>tr|A9T0W7|A9T0W7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_217831 PE=4 SV=1 Length = 507
Score = 47.4 bits (111), Expect = 4e-04 Identities = 29/67 (43%), Positives = 38/67 (56%) Frame = -3
Query: 203 GAEEAHQTETFEKDADVQ*ELAHDEIAHPQEKEQADERGEESFEDPLVRPPHGSEVFVGG 24 G EA E DA V ++A I +E++ A++ G D L RPPHGSE+FVGG Sbjct: 80 GITEADLAAAEETDAHVGADVA---IVEDKEEKDAEKSG-----DLLKRPPHGSEIFVGG 131
Query: 23 ITKDAVE 3 IT+D E Sbjct: 132 ITRDTTE 138
>tr|A7QFA8|A7QFA8_VITVI Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037346001 PE=4 SV=1 Length = 459
Score = 43.5 bits (101), Expect = 0.005 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Frame = -3
Query: 197 EEAHQTETFEKDADVQ*ELAHDEIAHPQEKEQA--------DERGEESFEDPLVRPPHGS 42 EE + E E++ +V+ E +E E++ DE + + L PPHGS Sbjct: 21 EEVEEEEVEEEEEEVEEEEEEEEANEADEQKSPSGGGGKIEDEDESKKHAELLALPPHGS 80
Query: 41 EVFVGGITKDAVE 3 EV+VGGI++DA E Sbjct: 81 EVYVGGISQDASE 93
>tr|Q9LXJ8|Q9LXJ8_ARATH Putative RNA binding protein (At3g52660) OS=Arabidopsis thaliana GN=F3C22_60 PE=2 SV=1 Length = 471
Score = 42.4 bits (98), Expect = 0.012 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Frame = -3
Query: 197 EEAHQTETFEKDADVQ*ELAHDEIAHPQEKEQADERGEESFEDP------LVRPPHGSEV 36 EE E E++ + E +E+ +E+E+ D E E+ L PPHGSEV Sbjct: 35 EEVEYEEVEEEEIEEIEEEIEEEVEVEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEV 94
Query: 35 FVGGITKDAVE 3 ++GGI DA E Sbjct: 95 YLGGIPTDATE 105
>tr|Q2HTD6|Q2HTD6_MEDTR RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF-hand OS=Medicago truncatula GN=MtrDRAFT_AC150443g37v2 PE=4 SV=2 Length = 559
Score = 42.4 bits (98), Expect = 0.012 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Frame = -3
Query: 203 GAEEAHQTETFEKDADVQ*ELAHDEIA-HPQEKEQA-----DERGEESFEDPLVRPPHGS 42 G+ E H+ E +A + + E + H E+++ DE E ++ L RPPHGS Sbjct: 45 GSVEEHEYEETAAEAGQKDQFPEGEKSDHGAEEDELKPALIDEEEREKHDELLSRPPHGS 104
Query: 41 EVFVGGITKD 12 EVF+GG+ +D Sbjct: 105 EVFIGGLPRD 114
>tr|Q9ASP6|Q9ASP6_ARATH AT4g00830/A_TM018A10_14 (Putative uncharacterized protein At4g00830) OS=Arabidopsis thaliana GN=At4g00830 PE=2 SV=1 Length = 495
Score = 42.0 bits (97), Expect = 0.015 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Frame = -3
Query: 230 EEPQILPYGGAEEAHQTETFEKDADVQ*ELAHDEIAHPQEKEQA--DERGEESFEDPLVR 57 EE ++ YG + + E+ A+ E A EK + D+ E + L Sbjct: 52 EEREVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSL 111
Query: 56 PPHGSEVFVGGITKDAVE 3 PPHGSEVF+GG+ +D E Sbjct: 112 PPHGSEVFIGGLPRDVGE 129
>tr|Q84VA8|Q84VA8_ORYSJ Putative RNA-binding protein (Fragment) OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 476
Score = 42.0 bits (97), Expect = 0.015 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 16/88 (18%) Frame = -3
Query: 227 EPQILPYGGAEEAHQTETFEKDADVQ*ELAH-DEIAHPQEKEQADERGEES--------- 78 E + + Y EE + E E+D DV E+ DE +E+E++DE S Sbjct: 46 EEEEIEYEEIEEEIEEEEVEEDEDVVEEVEEVDEEEDEEEEEESDETEGVSKTKGVHQKD 105
Query: 77 ------FEDPLVRPPHGSEVFVGGITKD 12 + L PPHGSEV+VGGI+ D Sbjct: 106 VTEKGKHAELLALPPHGSEVYVGGISSD 133
>tr|Q2QY16|Q2QY16_ORYSJ RNA recognition motif family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g04180 PE=4 SV=2 Length = 502
Score = 42.0 bits (97), Expect = 0.015 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 16/88 (18%) Frame = -3
Query: 227 EPQILPYGGAEEAHQTETFEKDADVQ*ELAH-DEIAHPQEKEQADERGEES--------- 78 E + + Y EE + E E+D DV E+ DE +E+E++DE S Sbjct: 34 EEEEIEYEEIEEEIEEEEVEEDEDVVEEVEEVDEEEDEEEEEESDETEGVSKTKGVHQKD 93
Query: 77 ------FEDPLVRPPHGSEVFVGGITKD 12 + L PPHGSEV+VGGI+ D Sbjct: 94 VTEKGKHAELLALPPHGSEVYVGGISSD 121
>tr|Q0IQ94|Q0IQ94_ORYSJ Os12g0136200 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os12g0136200 PE=4 SV=1 Length = 515
Score = 42.0 bits (97), Expect = 0.015 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 16/88 (18%) Frame = -3
Query: 227 EPQILPYGGAEEAHQTETFEKDADVQ*ELAH-DEIAHPQEKEQADERGEES--------- 78 E + + Y EE + E E+D DV E+ DE +E+E++DE S Sbjct: 47 EEEEIEYEEIEEEIEEEEVEEDEDVVEEVEEVDEEEDEEEEEESDETEGVSKTKGVHQKD 106
Query: 77 ------FEDPLVRPPHGSEVFVGGITKD 12 + L PPHGSEV+VGGI+ D Sbjct: 107 VTEKGKHAELLALPPHGSEVYVGGISSD 134
>tr|O23093|O23093_ARATH A_TM018A10.14 protein (Putative uncharacterized protein AT4g00830) OS=Arabidopsis thaliana GN=A_TM018A10.14 PE=2 SV=1 Length = 521
Score = 42.0 bits (97), Expect = 0.015 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Frame = -3
Query: 230 EEPQILPYGGAEEAHQTETFEKDADVQ*ELAHDEIAHPQEKEQA--DERGEESFEDPLVR 57 EE ++ YG + + E+ A+ E A EK + D+ E + L Sbjct: 52 EEREVEDYGDTKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSL 111
Query: 56 PPHGSEVFVGGITKDAVE 3 PPHGSEVF+GG+ +D E Sbjct: 112 PPHGSEVFIGGLPRDVGE 129
>tr|A3CER4|A3CER4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_033786 PE=3 SV=1 Length = 748
Score = 42.0 bits (97), Expect = 0.015 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 16/88 (18%) Frame = -3
Query: 227 EPQILPYGGAEEAHQTETFEKDADVQ*ELAH-DEIAHPQEKEQADERGEES--------- 78 E + + Y EE + E E+D DV E+ DE +E+E++DE S Sbjct: 34 EEEEIEYEEIEEEIEEEEVEEDEDVVEEVEEVDEEEDEEEEEESDETEGVSKTKGVHQKD 93
Query: 77 ------FEDPLVRPPHGSEVFVGGITKD 12 + L PPHGSEV+VGGI+ D Sbjct: 94 VTEKGKHAELLALPPHGSEVYVGGISSD 121
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