BP921291
Clone id YMU001_000148_A05
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTGTTATAGGGAATCAATTTAGACAAAAAGCCAATAACACCAGTCTATAGCAAACTCAAC
TGATAAGATCAGCCTACTCGTGTGAGAGCTTTGGGCCTGTGTTTGCACAAGGAACATGAA
GCTTACTATCCGTCGCCTGAACGAGGGACGCATCTCCCGTATAATTGCTACGATAAAATG
AAACGAATGATCACAAGAGAGTGTTTTGATGGTGCGCATTCCACACATAATTTGGCTTAT
TGAGTTGAAAACTCCACCACAACTCAAGGCTGCTTCAAAACCACTCGAGGTGACCATGCC
ATGCCACGCGACATCTCATACCACAGAATTGTTAGCCAGCAAAGGCATGGTCATCCACAT
AATTCTCTGCAACTATTTCATGATGCCACTGTATCAATCATAAACCACCGTATGAACAAG
AATTGACTCCCGTGCCACGTCATCTTGGGACTCTGCACTTTGGTTGGGGGTCGTAGAGTT
G
■■Homology search results ■■ -
sp_hit_id Q6ZP01
Definition sp|Q6ZP01|RBM44_HUMAN RNA-binding protein 44 OS=Homo sapiens
Align length 51
Score (bit) 31.2
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921291|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_A05.
(481 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6ZP01|RBM44_HUMAN RNA-binding protein 44 OS=Homo sapiens GN=... 31 2.6
sp|A6W3D6|METK_MARMS S-adenosylmethionine synthetase OS=Marinomo... 30 4.4
sp|Q2G6G9|RL25_NOVAD 50S ribosomal protein L25 OS=Novosphingobiu... 30 5.7
sp|Q0P5B7|AAAD_BOVIN Arylacetamide deacetylase OS=Bos taurus GN=... 30 7.5
sp|Q8K430|KLH17_RAT Kelch-like protein 17 OS=Rattus norvegicus G... 29 9.8
sp|Q6TDP3|KLH17_MOUSE Kelch-like protein 17 OS=Mus musculus GN=K... 29 9.8
sp|Q6TDP4|KLH17_HUMAN Kelch-like protein 17 OS=Homo sapiens GN=K... 29 9.8

>sp|Q6ZP01|RBM44_HUMAN RNA-binding protein 44 OS=Homo sapiens
GN=RBM44 PE=2 SV=2
Length = 1051

Score = 31.2 bits (69), Expect = 2.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1

Query: 166 CYDKMKRMITRECFDGAHSTHNLAY*VENSTTTQGCFKTTRGDHAMPRDIS 318
C+ + M T+ D A T + V+ ST + CF T+R A P +S
Sbjct: 442 CFHNIGEMCTKSLTDAASCTVTINQTVDVSTDFRACFTTSRATSARPSVVS 492


>sp|A6W3D6|METK_MARMS S-adenosylmethionine synthetase OS=Marinomonas
sp. (strain MWYL1) GN=metK PE=3 SV=1
Length = 387

Score = 30.4 bits (67), Expect = 4.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1

Query: 274 FKTTRGDHAMPRDISY-HRIVSQQRHGHPHNSLQLFHDATVSIINHRMNKN*LPCHV 441
F T D MP I+Y HR+V +Q + +L S + R ++N PC +
Sbjct: 127 FATNETDVLMPAPITYAHRLVQRQAEVRKNGTLDFLRPDAKSQVTFRYDENGKPCAI 183


>sp|Q2G6G9|RL25_NOVAD 50S ribosomal protein L25 OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=rplY PE=3 SV=1
Length = 204

Score = 30.0 bits (66), Expect = 5.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2

Query: 270 ALSCGGVFNSISQIMCGMRTIKTLSCDHSFH 178
AL G FNS+ ++ G +T++TL D +FH
Sbjct: 53 ALGTGHFFNSVVELTVGGQTVRTLPKDVAFH 83


>sp|Q0P5B7|AAAD_BOVIN Arylacetamide deacetylase OS=Bos taurus
GN=AADAC PE=2 SV=1
Length = 399

Score = 29.6 bits (65), Expect = 7.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1

Query: 253 SFQLNKPNYVWNAHHQNTLL*SFVSFYRSNYTGDASLVQATDSKLHVP 110
+F + P+Y NAH+ V F+ +T D SL +A S H+P
Sbjct: 224 NFDFDLPSYRENAHYPVLSKSLMVRFWSEYFTTDRSLKKAMLSNQHIP 271


>sp|Q8K430|KLH17_RAT Kelch-like protein 17 OS=Rattus norvegicus
GN=Klhl17 PE=1 SV=1
Length = 640

Score = 29.3 bits (64), Expect = 9.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1

Query: 325 RIVSQQRHGHPHNSLQLFHDATVSIINHRMNKN*LPCHVIL 447
+++S++ H HNS + +HDA V++ RM + L C ++L
Sbjct: 56 QLLSREGHSVAHNSKRHYHDAFVAM--SRMRQRGLLCDIVL 94


>sp|Q6TDP3|KLH17_MOUSE Kelch-like protein 17 OS=Mus musculus
GN=Klhl17 PE=2 SV=1
Length = 640

Score = 29.3 bits (64), Expect = 9.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1

Query: 325 RIVSQQRHGHPHNSLQLFHDATVSIINHRMNKN*LPCHVIL 447
+++S++ H HNS + +HDA V++ RM + L C ++L
Sbjct: 56 QLLSREGHSVAHNSKRHYHDAFVAM--SRMRQRGLLCDIVL 94


>sp|Q6TDP4|KLH17_HUMAN Kelch-like protein 17 OS=Homo sapiens
GN=KLHL17 PE=2 SV=1
Length = 642

Score = 29.3 bits (64), Expect = 9.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1

Query: 325 RIVSQQRHGHPHNSLQLFHDATVSIINHRMNKN*LPCHVIL 447
+++S++ H HNS + +HDA V++ RM + L C ++L
Sbjct: 58 QLLSREGHSVAHNSKRHYHDAFVAM--SRMRQRGLLCDIVL 96


tr_hit_id Q2L1R0
Definition tr|Q2L1R0|Q2L1R0_BORA1 Deoxyribodipyrimidine photo-lyase OS=Bordetella avium (strain 197N)
Align length 55
Score (bit) 35.0
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921291|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_A05.
(481 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2L1R0|Q2L1R0_BORA1 Deoxyribodipyrimidine photo-lyase OS=Bord... 35 1.8
tr|Q0IGU7|Q0IGU7_DROME HLH54F OS=Drosophila melanogaster GN=HLH5... 34 3.1
tr|Q0IGR5|Q0IGR5_DROME RT01130p (Fragment) OS=Drosophila melanog... 34 3.1
tr|O18374|O18374_DROME BHLH protein OS=Drosophila melanogaster G... 34 3.1
tr|Q884F8|Q884F8_PSESM Pyoverdine chromophore synthetase OS=Pseu... 33 7.0
tr|Q9NLD3|Q9NLD3_CAEEL Protein F58D5.5, partially confirmed by t... 33 9.2

>tr|Q2L1R0|Q2L1R0_BORA1 Deoxyribodipyrimidine photo-lyase
OS=Bordetella avium (strain 197N) GN=BAV1591 PE=3 SV=1
Length = 407

Score = 35.0 bits (79), Expect = 1.8
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -2

Query: 306 WHGMVTSSGFEAALSCGGVFNSISQIMCGMRTIKTLSCDHSFHFIVAIIREMRPS 142
W + T G AA C G S+ +++ G R I+TLS H H + A +R+ RP+
Sbjct: 312 WRFVATRMGAVAAYDCYGDGASLLRLLQGARDIQTLSNPHVRHLLPAAVRQ-RPA 365


>tr|Q0IGU7|Q0IGU7_DROME HLH54F OS=Drosophila melanogaster GN=HLH54F
PE=2 SV=1
Length = 242

Score = 34.3 bits (77), Expect = 3.1
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Frame = +1

Query: 205 FDGAHSTHNLAY*VENSTT-----------TQGCFKTTRGDHAMPRDISYHRIVSQQRHG 351
F+ S+ +LA+ +STT TQ KTTRG+ + D+SYH++ H
Sbjct: 146 FEFHQSSRSLAFAPSSSTTSSARMDWQTLHTQSYPKTTRGETHVSADLSYHQLPESHSHW 205

Query: 352 HPHNSLQLFHDATVS 396
+P Q+ A+ S
Sbjct: 206 YPAEVHQMEPAASCS 220


>tr|Q0IGR5|Q0IGR5_DROME RT01130p (Fragment) OS=Drosophila
melanogaster GN=HLH54F PE=2 SV=3
Length = 247

Score = 34.3 bits (77), Expect = 3.1
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Frame = +1

Query: 205 FDGAHSTHNLAY*VENSTT-----------TQGCFKTTRGDHAMPRDISYHRIVSQQRHG 351
F+ S+ +LA+ +STT TQ KTTRG+ + D+SYH++ H
Sbjct: 151 FEFHQSSRSLAFAPSSSTTSSARMDWQTLHTQSYPKTTRGETHVSADLSYHQLPESHSHW 210

Query: 352 HPHNSLQLFHDATVS 396
+P Q+ A+ S
Sbjct: 211 YPAEVHQMEPAASCS 225


>tr|O18374|O18374_DROME BHLH protein OS=Drosophila melanogaster
GN=HLH54F PE=2 SV=1
Length = 242

Score = 34.3 bits (77), Expect = 3.1
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Frame = +1

Query: 205 FDGAHSTHNLAY*VENSTT-----------TQGCFKTTRGDHAMPRDISYHRIVSQQRHG 351
F+ S+ +LA+ +STT TQ KTTRG+ + D+SYH++ H
Sbjct: 146 FEFHQSSRSLAFAPSSSTTSSARMDWQTLHTQSYPKTTRGETHVSADLSYHQLPESHSHW 205

Query: 352 HPHNSLQLFHDATVS 396
+P Q+ A+ S
Sbjct: 206 YPAEVHQMEPAASCS 220


>tr|Q884F8|Q884F8_PSESM Pyoverdine chromophore synthetase
OS=Pseudomonas syringae pv. tomato GN=pvsA PE=3 SV=1
Length = 4336

Score = 33.1 bits (74), Expect = 7.0
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Frame = +1

Query: 127 YPSPERGTHLPYN-----------CYDKMKRMITR--ECFDGAHSTHNLAY*VENSTTTQ 267
YP + G HL Y+ D+ KR++ E F G + L E + +
Sbjct: 3651 YPGDDLGLHLSYDQRYFDESTVQSMLDEFKRLLLALIEGFHGDMAGLALVSEQERTFLIE 3710

Query: 268 GCFKTTRGDHAMPRDISYHRIVSQQRHGHP 357
GC + DHA P D SY + Q HP
Sbjct: 3711 GC---NQSDHAYPLDKSYVELFEAQVEAHP 3737


>tr|Q9NLD3|Q9NLD3_CAEEL Protein F58D5.5, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=F58D5.5
PE=2 SV=2
Length = 159

Score = 32.7 bits (73), Expect = 9.2
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2

Query: 191 SQESVLMVRIPHIIWLIELKTPPQLKAASKP-LEVTMPCHATSHTTELLASKGMVI 355
S S V +P + WL +L+ P QL+ +S+P ++M A+S T+ L +S +I
Sbjct: 69 SSPSARNVPLPPVEWLNQLQVPGQLENSSRPSSSISMTSSASSSTSSLSSSDAPMI 124