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NBDC - LSDB Archive
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BP921299
Clone id YMU001_000148_B04
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAGCCTAATTACTTCAAATACCTCCCAGGCGCCCTAAAATTCAGAAGGATCATAAACAG
GACTGCTCCTTACCAAAATGAACAGACTCCATGACCCAATAAGCTCGCAGAATTGTAAAA
TGGATAATGGCCTACCCTTCAATAGAGTAATTGCGATTACCTTTCCATAGCAGTCACATG
GAGGTAGCCCACTACTTCGTGAACTCGTCCTCCATAGCAACCAATGACTTCAAGTCTTCA
AAGTACACCGACATGGCCTCAAGCCCCATTTCAAGTCTGCTAAGAGTCTGGTTCAGCTGC
TGAGCATGCCAAGCTTGCCCTTCACCGCTCTTTAAGACCTCTCTTTTCACTACAGGATGT
AAAAGGGGAGCCGGTAAAGCAACCCACCGTCTTTGATTCAGTGTCACCTCATTCAAGCTG
TCTAAAATCGCAAACATGTTTGATAACTCTGCCGTCTTATAAAACACATCATAGACTCCA
TTTCCCC
■■Homology search results ■■ -
sp_hit_id P38885
Definition sp|P38885|YHZ9_YEAST Uncharacterized protein YHR199C OS=Saccharomyces cerevisiae
Align length 55
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921299|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_B04.
         (487 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38885|YHZ9_YEAST Uncharacterized protein YHR199C OS=Saccharo...    31   3.4  
sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus G...    31   3.4  
sp|Q9IGQ0|NRAM_I76AI Neuraminidase OS=Influenza A virus (strain ...    31   3.4  
sp|Q76WJ1|NRAM_I76A7 Neuraminidase OS=Influenza A virus (strain ...    31   3.4  
sp|P11485|NRAM_I83A1 Neuraminidase OS=Influenza A virus (strain ...    30   4.5  
sp|P31348|NRAM_I79A4 Neuraminidase OS=Influenza A virus (strain ...    30   4.5  
sp|P03469|NRAM_I77AB Neuraminidase OS=Influenza A virus (strain ...    30   4.5  
sp|P31349|NRAM_I54A0 Neuraminidase OS=Influenza A virus (strain ...    30   4.5  
sp|O75038|PLCH2_HUMAN 1-phosphatidylinositol-4,5-bisphosphate ph...    30   5.8  
sp|P03468|NRAM_I34A1 Neuraminidase OS=Influenza A virus (strain ...    30   5.8  
sp|A7I4W9|PIMT_METB6 Protein-L-isoaspartate O-methyltransferase ...    30   7.5  
sp|Q6YQV8|EFTU_ONYPE Elongation factor Tu OS=Onion yellows phyto...    30   7.5  
sp|Q6AX33|MAST3_XENLA Microtubule-associated serine/threonine-pr...    30   7.6  
sp|Q8BFQ9|KLDC5_MOUSE Kelch domain-containing protein 5 OS=Mus m...    30   7.6  
sp|Q9P2K6|KLDC5_HUMAN Kelch domain-containing protein 5 OS=Homo ...    30   7.6  
sp|Q2NJ20|EFTU_AYWBP Elongation factor Tu OS=Aster yellows witch...    29   9.8  
sp|Q8NUQ6|CRTN_STAAW Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|Q6G6B3|CRTN_STAAS Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|Q7A3E2|CRTN_STAAN Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|Q99R76|CRTN_STAAM Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|O07855|CRTN_STAAE Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|Q5HCY9|CRTN_STAAC Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|Q2YWE8|CRTN_STAAB Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|Q2FV60|CRTN_STAA8 Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|Q2FDU6|CRTN_STAA3 Dehydrosqualene desaturase OS=Staphylococcu...    29   9.8  
sp|Q9W7Y7|NRAM_I97A1 Neuraminidase OS=Influenza A virus (strain ...    29   9.9  
sp|Q9WAA1|NRAM_I97A0 Neuraminidase OS=Influenza A virus (strain ...    29   9.9  
sp|Q9IGQ6|NRAM_I18A0 Neuraminidase OS=Influenza A virus (strain ...    29   9.9  

>sp|P38885|YHZ9_YEAST Uncharacterized protein YHR199C
           OS=Saccharomyces cerevisiae GN=YHR199C PE=1 SV=1
          Length = 310

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 365 LLHPVVKREVLKSGEGQAWHAQQLNQTLSRLEMGLEAMSVYFEDLKSLVAMEDEF 201
           LL    K+ VLK+ + Q+       Q   RLE G + +   F  +K LVA +D+F
Sbjct: 199 LLMDGTKKSVLKNPDSQS-------QDKDRLEAGFQELHDCFRSVKGLVARDDDF 246


>sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus
           GN=Gp5 PE=2 SV=1
          Length = 567

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = -3

Query: 440 NMFAILDSLNEVTLNQRRWVALPAPLLHPVVKREVLKSGEGQAWHAQQLNQTLSRLEMGL 261
           N+F  L +L ++ LNQ +   LPA L   + K +VL        H   L Q L   ++ L
Sbjct: 140 NLFQKLLNLRDLCLNQNQLSFLPANLFSSLGKLKVLDLSRNNLTH---LPQGLLGAQIKL 196

Query: 260 EAMSVYFEDLKSL 222
           E + +Y   L SL
Sbjct: 197 EKLLLYSNRLMSL 209


>sp|Q9IGQ0|NRAM_I76AI Neuraminidase OS=Influenza A virus (strain
           A/Swine/New Jersey/11/1976 H1N1) GN=NA PE=2 SV=1
          Length = 469

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +2

Query: 287 SGSAAEHAKLALHRSLRPLFSLQDVKGEPVKQPTVFDSVSPHSSC 421
           SGS  +H +L     +RP F ++ ++G+P K+ T++ S S  S C
Sbjct: 403 SGSFVQHPELTGMNCIRPCFWVELIRGQP-KESTIWTSGSSISFC 446


>sp|Q76WJ1|NRAM_I76A7 Neuraminidase OS=Influenza A virus (strain
           A/New Jersey/8/1976 H1N1) GN=NA PE=3 SV=1
          Length = 469

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +2

Query: 287 SGSAAEHAKLALHRSLRPLFSLQDVKGEPVKQPTVFDSVSPHSSC 421
           SGS  +H +L     +RP F ++ ++G+P K+ T++ S S  S C
Sbjct: 403 SGSFVQHPELTGMNCIRPCFWVELIRGQP-KESTIWTSGSSISFC 446


>sp|P11485|NRAM_I83A1 Neuraminidase OS=Influenza A virus (strain
           A/Chile/1/1983 H1N1) GN=NA PE=3 SV=1
          Length = 470

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 287 SGSAAEHAKLALHRSLRPLFSLQDVKGEPVKQPTVFDSVSPHSSC 421
           SGS  +H +L     +RP F ++ ++G P ++ T++ S S  S C
Sbjct: 403 SGSFVQHPELTGLDCMRPCFWVELIRGRPREKTTIWTSGSSISFC 447


>sp|P31348|NRAM_I79A4 Neuraminidase OS=Influenza A virus (strain
           A/Kiev/59/1979 H1N1) GN=NA PE=3 SV=1
          Length = 470

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 287 SGSAAEHAKLALHRSLRPLFSLQDVKGEPVKQPTVFDSVSPHSSC 421
           SGS  +H +L     +RP F ++ ++G P ++ T++ S S  S C
Sbjct: 403 SGSFVQHPELTGLDCMRPCFWVELIRGRPREKTTIWTSGSSISFC 447


>sp|P03469|NRAM_I77AB Neuraminidase OS=Influenza A virus (strain
           A/USSR/90/1977 H1N1) GN=NA PE=3 SV=2
          Length = 470

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 287 SGSAAEHAKLALHRSLRPLFSLQDVKGEPVKQPTVFDSVSPHSSC 421
           SGS  +H +L     +RP F ++ ++G P ++ T++ S S  S C
Sbjct: 403 SGSFVQHPELTGLDCMRPCFWVELIRGRPREKTTIWTSGSSISFC 447


>sp|P31349|NRAM_I54A0 Neuraminidase OS=Influenza A virus (strain
           A/Leningrad/1/1954 H1N1) GN=NA PE=3 SV=1
          Length = 470

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 287 SGSAAEHAKLALHRSLRPLFSLQDVKGEPVKQPTVFDSVSPHSSC 421
           SGS  +H +L     +RP F ++ ++G P ++ T++ S S  S C
Sbjct: 403 SGSFVQHPELTGLDCMRPCFWVELIRGRPREKTTIWTSGSSISFC 447


>sp|O75038|PLCH2_HUMAN 1-phosphatidylinositol-4,5-bisphosphate
            phosphodiesterase eta-2 OS=Homo sapiens GN=PLCH2 PE=2
            SV=3
          Length = 1416

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 257  PQAPFQVC*ESGSAAEHAKLALHRSLRPLFSLQDVKGEPVKQP 385
            P+AP Q    SGS  +   L+  R L PL SL+ +  EP   P
Sbjct: 972  PEAPAQEGPGSGSPRDTRPLSTQRPLPPLCSLETIAEEPAPGP 1014


>sp|P03468|NRAM_I34A1 Neuraminidase OS=Influenza A virus (strain
           A/Puerto Rico/8/1934 H1N1) GN=NA PE=3 SV=2
          Length = 454

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 287 SGSAAEHAKLALHRSLRPLFSLQDVKGEPVKQPTVFDSVSPHSSC 421
           SGS  +H +L     +RP F ++ ++G P K+ T++ S S  S C
Sbjct: 388 SGSFVQHPELTGLDCMRPCFWVELIRGRP-KEKTIWTSASSISFC 431
tr_hit_id A9STC3
Definition tr|A9STC3|A9STC3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 90
Score (bit) 69.7
E-value 7.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921299|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_B04.
         (487 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9STC3|A9STC3_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|A9TIV0|A9TIV0_PHYPA Predicted protein OS=Physcomitrella paten...    59   9e-08
tr|Q9LW59|Q9LW59_ARATH Genomic DNA, chromosome 3, P1 clone: MLM2...    40   0.044
tr|Q1G2Z6|Q1G2Z6_ARATH Putative uncharacterized protein OS=Arabi...    40   0.044
tr|B3H5H9|B3H5H9_ARATH Uncharacterized protein At3g23370.2 OS=Ar...    40   0.044
tr|O60975|O60975_LEIMA Putative uncharacterized protein OS=Leish...    35   1.4  
tr|A4HRJ7|A4HRJ7_LEIIN Putative uncharacterized protein OS=Leish...    35   1.4  
tr|A4H391|A4H391_LEIBR Putative uncharacterized protein OS=Leish...    35   1.4  
tr|Q1DZP8|Q1DZP8_COCIM Putative uncharacterized protein OS=Cocci...    33   5.5  
tr|A9V4D8|A9V4D8_MONBE Predicted protein OS=Monosiga brevicollis...    33   7.0  
tr|A9MNG3|A9MNG3_SALAR Putative uncharacterized protein OS=Salmo...    33   9.1  

>tr|A9STC3|A9STC3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166459 PE=4 SV=1
          Length = 593

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 37/90 (41%), Positives = 54/90 (60%)
 Frame = -3

Query: 470 DVFYKTAELSNMFAILDSLNEVTLNQRRWVALPAPLLHPVVKREVLKSGEGQAWHAQQLN 291
           DV++++ EL NM  IL  LNEVT+N RRW A P+P L       +LK+ EGQ W   +  
Sbjct: 495 DVYFQSTELENMSRILARLNEVTMNGRRWHAQPSPCLGSGSYEALLKTREGQEWLQLESE 554

Query: 290 QTLSRLEMGLEAMSVYFEDLKSLVAMEDEF 201
           + LS++E  L+ + V  EDL+ LV +   +
Sbjct: 555 RMLSKVENALKELVVDVEDLQELVKVNRRY 584


>tr|A9TIV0|A9TIV0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93324 PE=4 SV=1
          Length = 666

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 30/92 (32%), Positives = 52/92 (56%)
 Frame = -3

Query: 482 NGVYDVFYKTAELSNMFAILDSLNEVTLNQRRWVALPAPLLHPVVKREVLKSGEGQAWHA 303
           +G+ DV++  +EL NM  IL  LNEV +  + W A P+  + P     ++++  GQ W  
Sbjct: 537 DGIVDVYFHPSELENMPRILSRLNEVKVEGQVWQAQPSSCMDPSSYLSLMRTRGGQEWLQ 596

Query: 302 QQLNQTLSRLEMGLEAMSVYFEDLKSLVAMED 207
           Q+  + L R+E  L+ + V  EDL+  V +++
Sbjct: 597 QESERMLGRIESALKHLVVEVEDLQREVVLKE 628


>tr|Q9LW59|Q9LW59_ARATH Genomic DNA, chromosome 3, P1 clone: MLM24
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 811

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -3

Query: 485 GNGVYDVFYKTAELSNMFAILDSLNEVTLNQRRWVALPA-PLLHPVVKREVLKSGEGQAW 309
           G GV DVF+  +E  NM AIL+S+N + ++ ++ V  PA  ++ P + R + K    + +
Sbjct: 722 GTGVADVFFDISEWPNMLAILNSMNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRY 781

Query: 308 HAQQLNQTLSRLEMGLEA 255
               +   +  +E  L+A
Sbjct: 782 VKSVIQNLVREIEQPLDA 799


>tr|Q1G2Z6|Q1G2Z6_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana GN=At3g23370 PE=2 SV=1
          Length = 226

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -3

Query: 485 GNGVYDVFYKTAELSNMFAILDSLNEVTLNQRRWVALPA-PLLHPVVKREVLKSGEGQAW 309
           G GV DVF+  +E  NM AIL+S+N + ++ ++ V  PA  ++ P + R + K    + +
Sbjct: 137 GTGVADVFFDISEWPNMLAILNSMNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRY 196

Query: 308 HAQQLNQTLSRLEMGLEA 255
               +   +  +E  L+A
Sbjct: 197 VKSVIQNLVREIEQPLDA 214


>tr|B3H5H9|B3H5H9_ARATH Uncharacterized protein At3g23370.2
           OS=Arabidopsis thaliana GN=At3g23370 PE=4 SV=1
          Length = 771

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -3

Query: 485 GNGVYDVFYKTAELSNMFAILDSLNEVTLNQRRWVALPA-PLLHPVVKREVLKSGEGQAW 309
           G GV DVF+  +E  NM AIL+S+N + ++ ++ V  PA  ++ P + R + K    + +
Sbjct: 682 GTGVADVFFDISEWPNMLAILNSMNGMEIDGKKLVVRPATTVIPPEILRVLWKDPREKRY 741

Query: 308 HAQQLNQTLSRLEMGLEA 255
               +   +  +E  L+A
Sbjct: 742 VKSVIQNLVREIEQPLDA 759


>tr|O60975|O60975_LEIMA Putative uncharacterized protein
           OS=Leishmania major strain Friedlin GN=LMJ_0075 PE=4
           SV=1
          Length = 751

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 136 PSIE*LRLPFHSSHMEVAHYFVNSSSIATNDFKSSKYTDMASSPISS-LLRVWF 294
           P+IE LR+P  S+  E      NS+S+A  D    +Y D+   P++S + RVWF
Sbjct: 615 PTIELLRIPGDSAVEEYVLLDTNSNSLACTDLYHGEYADL--DPVNSWMCRVWF 666


>tr|A4HRJ7|A4HRJ7_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ01.0750 PE=4 SV=1
          Length = 754

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 136 PSIE*LRLPFHSSHMEVAHYFVNSSSIATNDFKSSKYTDMASSPISS-LLRVWF 294
           P+IE LR+P  S+  E      NS+S+A  D    +Y D+   P++S + RVWF
Sbjct: 618 PAIELLRIPGDSAVEEYVLLDANSNSLACTDLYHGEYADL--DPVNSWMCRVWF 669


>tr|A4H391|A4H391_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM01_V2.0710 PE=4 SV=1
          Length = 739

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 136 PSIE*LRLPFHSSHMEVAHYFVNSSSIATNDFKSSKYTDMASSPISS-LLRVWF 294
           P+IE LR+P  S+  E   +  NS+S+A  D    +Y D+   P +S + RVWF
Sbjct: 605 PTIELLRIPGDSAVEEYVLFDANSNSLACTDLYHGEYADL--DPANSWMCRVWF 656


>tr|Q1DZP8|Q1DZP8_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_04215 PE=4 SV=1
          Length = 1085

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 290 GSAAEHAKLALHRSLRPLFSLQDVKGEPVKQPTVFDSVSPHSSCLKSQTCLITLPSYKTH 469
           G    H  +  H  L+P  S+QDV  E +  P      +PH S        + LPS  + 
Sbjct: 350 GDPFAHRPVTRHVPLKPCSSMQDVDSEDLISPWTMPRNAPHRSSFSQDNDCLDLPSIDSA 409

Query: 470 HR 475
            R
Sbjct: 410 RR 411


>tr|A9V4D8|A9V4D8_MONBE Predicted protein OS=Monosiga brevicollis
           GN=9838 PE=4 SV=1
          Length = 421

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = -3

Query: 452 AELSNMFAILDSLNEVTLNQRRWVALPAPLLHPVVKREVLKSGEGQAWHAQQLNQTLSRL 273
           A L  + A +   N VT +    + L AP+    V  E L+S + +A   QQLN TL+ L
Sbjct: 82  ARLVKLDAHMPPPNRVTSDAEERLELTAPIAVAGVDLEALQSPQSRAGDPQQLNDTLAAL 141

Query: 272 EMGL 261
              L
Sbjct: 142 RQAL 145