Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921301|Adiantum capillus-veneris mRNA, clone: YMU001_000148_B06. (422 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chl... 154 2e-37 sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chl... 153 3e-37 sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chl... 109 4e-24 sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl... 82 9e-16 sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop... 80 3e-15 sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29 OS=Chl... 74 3e-13 sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor... 71 2e-12 sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloropl... 68 2e-11 sp|P12327|CB21_EUGGR Chlorophyll a-b binding protein of LHCII ty... 68 2e-11 sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch... 68 2e-11 sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII ty... 67 3e-11 sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloropl... 67 3e-11 sp|P92919|CB23_APIGR Chlorophyll a-b binding protein, chloroplas... 66 5e-11 sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloropl... 65 8e-11 sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloropl... 65 1e-10 sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII ty... 65 1e-10 sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplas... 65 1e-10 sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chlorop... 65 1e-10 sp|P04781|CB23_PETSP Chlorophyll a-b binding protein 22R, chloro... 65 1e-10 sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop... 64 2e-10 sp|P10707|CB2D_SOLLC Chlorophyll a-b binding protein 1D (Fragmen... 64 2e-10 sp|P14275|CB2C_SOLLC Chlorophyll a-b binding protein 1C, chlorop... 64 2e-10 sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chlorop... 64 2e-10 sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplas... 64 2e-10 sp|P14274|CB2A_SOLLC Chlorophyll a-b binding protein 1A, chlorop... 64 2e-10 sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl... 64 2e-10 sp|P04783|CB25_PETSP Chlorophyll a-b binding protein 91R, chloro... 64 2e-10 sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl... 64 2e-10 sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop... 64 2e-10 sp|P27489|CB23_SOLLC Chlorophyll a-b binding protein 13, chlorop... 64 2e-10
>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1 Length = 287
Score = 154 bits (388), Expect = 2e-37 Identities = 76/99 (76%), Positives = 80/99 (80%) Frame = -3
Query: 420 TLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKLAEIKHARLX 241 TL+WIE LVIGYIEFQRN ELD EKRLYPGGKFFDPLGLASDP KK L+LAEIKHARL Sbjct: 187 TLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLA 246
Query: 240 XXXXXXXXXXXXATGKGPLDNWATHLSDPLHTTIIDTFT 124 ATGKGPL+NWATHLSDPLHTTIIDTF+ Sbjct: 247 MVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285
>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=2 SV=1 Length = 290
Score = 153 bits (386), Expect = 3e-37 Identities = 75/99 (75%), Positives = 80/99 (80%) Frame = -3
Query: 420 TLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKLAEIKHARLX 241 TL+WIE LVIGYIEFQRN ELD EKRLYPGGKFFDPLGLA+DPEK L+LAEIKHARL Sbjct: 190 TLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLA 249
Query: 240 XXXXXXXXXXXXATGKGPLDNWATHLSDPLHTTIIDTFT 124 ATGKGPL+NWATHLSDPLHTTIIDTF+ Sbjct: 250 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288
>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=2 SV=1 Length = 276
Score = 109 bits (273), Expect = 4e-24 Identities = 54/84 (64%), Positives = 62/84 (73%) Frame = -3
Query: 420 TLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKLAEIKHARLX 241 TL+WIE LV+GYIEFQRN ELDPEKR+YPGG +FDPLGLA+DPEK + LKLAEIKH+RL Sbjct: 191 TLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLA 249
Query: 240 XXXXXXXXXXXXATGKGPLDNWAT 169 TGKGP+ AT Sbjct: 250 MVAFLIFALQAAFTGKGPVSFLAT 273
>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1 Length = 245
Score = 82.0 bits (201), Expect = 9e-16 Identities = 48/97 (49%), Positives = 56/97 (57%), Gaps = 1/97 (1%) Frame = -3
Query: 420 TLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKLAEIKHARL- 244 T++ IE L I + E QR E DPEK+ YPGG FDPLG + DP K E LKL EIK+ RL Sbjct: 140 TILAIEFLAIAFAEQQRTMEKDPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLA 198
Query: 243 XXXXXXXXXXXXXATGKGPLDNWATHLSDPLHTTIID 133 G GPL+N ATHL+DP H I D Sbjct: 199 MLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235
Score = 33.5 bits (75), Expect = 0.35 Identities = 17/30 (56%), Positives = 19/30 (63%) Frame = -3
Query: 336 PGGKFFDPLGLASDPEKKEVLKLAEIKHAR 247 PG FDPLGLA+ PE E K +EI H R Sbjct: 63 PGDFGFDPLGLATVPENFERFKESEIYHCR 92
>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1 Length = 246
Score = 80.1 bits (196), Expect = 3e-15 Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Frame = -3
Query: 420 TLVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKLAEIKHARL- 244 T++ IE L I ++E QR+ E D EK+ YPGG FDPLG + DP K E LK+ EIK+ RL Sbjct: 141 TILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLA 199
Query: 243 XXXXXXXXXXXXXATGKGPLDNWATHLSDPLHTTIID 133 G GPL+N ATHL+DP H I D Sbjct: 200 LLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGD 236
>sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3 Length = 280
Score = 73.6 bits (179), Expect = 3e-13 Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Frame = -3
Query: 417 LVWIEALVIGYIEFQRNGELDPEKRLYPGGKFFDPLGLASDPEKKEV-LKLAEIKHARLX 241 L+WIE +++G EF RN E +PEKR YPGG FDPL LAS+ E++ LK AEIKHARL Sbjct: 187 LIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLA 245
Query: 240 XXXXXXXXXXXXATGKGPLDNWA 172 +TG+G L + A Sbjct: 246 MVSFFGYGVQALSTGEGALGSLA 268
>sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1 Length = 280
Score = 71.2 bits (173), Expect = 2e-12 Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Frame = -3
Query: 405 EALVIGYIEFQR--NGELDPEKRLYPGGKFFDPLGLASDPEKKEVLKLAEIKHARLXXXX 232 E +++G E+ R NG LD E +L+PGG F DPLGLA DPE+ +LK+ EIK+ RL Sbjct: 178 EVVLLGGAEYYRITNG-LDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFA 235
Query: 231 XXXXXXXXXATGKGPLDNWATHLSDPLHTTII 136 TG+GP++N A HLSDP ++ Sbjct: 236 MLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267
>sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1 Length = 267
Score = 67.8 bits (164), Expect = 2e-11 Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 5/94 (5%) Frame = -3
Query: 414 VWI-EALVIGYIEFQR---NGEL-DPEKRLYPGGKFFDPLGLASDPEKKEVLKLAEIKHA 250 +W + +++G +E R NG L + E LYPGG F DPLGLA+DPE LK+ E+K+ Sbjct: 161 IWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNG 219
Query: 249 RLXXXXXXXXXXXXXATGKGPLDNWATHLSDPLH 148 RL TGKGP++N A HL+DP++ Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
>sp|P12327|CB21_EUGGR Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1 Length = 127
Score = 67.8 bits (164), Expect = 2e-11 Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 6/90 (6%) Frame = -3
Query: 405 EALVIGYIEFQRNGELDPEK------RLYPGGKFFDPLGLASDPEKKEVLKLAEIKHARL 244 + L++G +E R G P + RLYPGG F DPLGLA DP+ LK+ EIK+ RL Sbjct: 18 QVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPF-DPLGLADDPDTFPELKVKEIKNGRL 76
Query: 243 XXXXXXXXXXXXXATGKGPLDNWATHLSDP 154 TG+GP++NW HL DP Sbjct: 77 AMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106
>sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1 Length = 267
Score = 67.8 bits (164), Expect = 2e-11 Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 5/94 (5%) Frame = -3
Query: 414 VWI-EALVIGYIEFQR---NGEL-DPEKRLYPGGKFFDPLGLASDPEKKEVLKLAEIKHA 250 +W + +++G +E R NG L + E LYPGG F DPLGLA+DPE LK+ E+K+ Sbjct: 161 IWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNG 219
Query: 249 RLXXXXXXXXXXXXXATGKGPLDNWATHLSDPLH 148 RL TGKGP++N A HL+DP++ Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
|
Report |
|