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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921303
Clone id YMU001_000148_B08
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCCTTGAAACTTCTTTATCCTACATCTAGAGATTGCCAATTTAACCATATTCCCCTTAA
TCAATGTCCTTCACATTGTTAATAATGTAAACTTTCCATTAAAACAAAATCTATCAGAAG
CAAAATAACTACCATGATTTTTCAACATAGTGATTGTGCAATGATCACTATGTGGATAGC
TTGGTCCTTCCCAGATCTTACGTCGCTCACACATATGAGATAGTCTAGTCTTATGACTGC
AAGATAGAATAGGCTTCTAACTTGTCTGCGTTGCATGTTTTAAGGTGTTGCAAATCTAAT
CCCTACTCTTTTTTGTAGCATCTTTGAGAATATTATGGAGAGTTTTGTTGCCACAACACC
TGGAATTTCAAACTAGCACGCAGCCTTTCAATCACGAACGCTCTGAAAGATTTTGGTATT
CTATCATCCTACATAGCATAAGGTCCTCTATATAGCTCA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921303|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_B08.
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q5NJJ1
Definition tr|Q5NJJ1|Q5NJJ1_DANRE Matrilin-4 (Fragment) OS=Danio rerio
Align length 61
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921303|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_B08.
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5NJJ1|Q5NJJ1_DANRE Matrilin-4 (Fragment) OS=Danio rerio GN=m...    35   1.9  
tr|Q6PYX2|Q6PYX2_DANRE Matrilin-4-like protein OS=Danio rerio GN...    33   9.2  
tr|Q5NJJ5|Q5NJJ5_DANRE Matrilin-4 OS=Danio rerio GN=matn4 PE=2 SV=1    33   9.2  
tr|Q5NJJ0|Q5NJJ0_DANRE Matrilin-4 (Fragment) OS=Danio rerio GN=m...    33   9.2  
tr|B3DKJ1|B3DKJ1_DANRE Matn4 protein OS=Danio rerio GN=matn4 PE=...    33   9.2  

>tr|Q5NJJ1|Q5NJJ1_DANRE Matrilin-4 (Fragment) OS=Danio rerio
           GN=matn4 PE=2 SV=1
          Length = 644

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -3

Query: 448 EDLMLCRMIEYQNLSERS*LKGCVLV*NSRCCGNKTLHNILKDATKKSRD*ICNTLKHAT 269
           EDL  C MI+Y +    S    CV V N   C     + + +D      D +CNT++H  
Sbjct: 316 EDLKTCTMIDYCSFGNHSCDHHCVSVLNGFFCRCNEGYTLQEDGKTCQSDNLCNTVEHGC 375

Query: 268 Q 266
           +
Sbjct: 376 E 376


>tr|Q6PYX2|Q6PYX2_DANRE Matrilin-4-like protein OS=Danio rerio
           GN=matn4 PE=2 SV=1
          Length = 821

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -3

Query: 448 EDLMLCRMIEYQNLSERS*LKGCVLV*NSRCCGNKTLHNILKDATKKSRD*ICNTLKHAT 269
           ED   C MI+Y +    S    CV V N   C     + + +D      D +CNT++H  
Sbjct: 493 EDKKTCTMIDYCSFGNHSCDHHCVSVLNGFFCRCNEGYTLQEDGKTCQSDNLCNTVEHGC 552

Query: 268 Q 266
           +
Sbjct: 553 E 553


>tr|Q5NJJ5|Q5NJJ5_DANRE Matrilin-4 OS=Danio rerio GN=matn4 PE=2 SV=1
          Length = 944

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -3

Query: 448 EDLMLCRMIEYQNLSERS*LKGCVLV*NSRCCGNKTLHNILKDATKKSRD*ICNTLKHAT 269
           ED   C MI+Y +    S    CV V N   C     + + +D      D +CNT++H  
Sbjct: 616 EDKKTCTMIDYCSFGNHSCDHHCVSVLNGFFCRCNEGYTLQEDGKTCQSDNLCNTVEHGC 675

Query: 268 Q 266
           +
Sbjct: 676 E 676


>tr|Q5NJJ0|Q5NJJ0_DANRE Matrilin-4 (Fragment) OS=Danio rerio
           GN=matn4 PE=2 SV=1
          Length = 428

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 448 EDLMLCRMIEYQNLSERS*LKGCVLV*NSRCCGNKTLHNILKDATKKSRD*ICNTLKHAT 269
           +D   C+MI+Y +    S    CV V N   C     + + +D      D +CNT++H  
Sbjct: 275 DDKKTCKMIDYCSFGNHSCDHHCVSVLNGFFCRCNEGYTLQEDGKTCQSDNLCNTVEHGC 334

Query: 268 Q 266
           +
Sbjct: 335 E 335


>tr|B3DKJ1|B3DKJ1_DANRE Matn4 protein OS=Danio rerio GN=matn4 PE=2
           SV=1
          Length = 944

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -3

Query: 448 EDLMLCRMIEYQNLSERS*LKGCVLV*NSRCCGNKTLHNILKDATKKSRD*ICNTLKHAT 269
           ED   C MI+Y +    S    CV V N   C     + + +D      D +CNT++H  
Sbjct: 616 EDKKTCTMIDYCSFGNHSCDHHCVSVLNGFFCRCNEGYTLQEDGKTCQSDNLCNTVEHGC 675

Query: 268 Q 266
           +
Sbjct: 676 E 676