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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921307
Clone id YMU001_000148_C04
Library
Length 347
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATAATTAAGAAACAAATACGAAGAAACTTAGCCAACCCACTTATCACAACCTCGAACGG
GCAATTAACTTCTCAAAAAGTAACCTCAACATCGAACATTGACATCCGCATCCGTCTGCA
CTCCAAGTAATGGGCGTAGCAAGCTTATATAATGTAAACTTCAGGAATGAGTACAAGGCC
ACTGCTAACCTCGAAAAATGCCGCAGCAGAAGTTTCTGATATACAAATTACCTACATACG
TCATCCAATTTGGAAGGTATACATTGCTCTCGAAGACAAGTCACTGTCGGAGACATCTAT
AGAACAAGTCAAATGTGGCAGCGGTCCTTAAATAGTTATGCACATCT
■■Homology search results ■■ -
sp_hit_id Q8IRU4
Definition sp|Q8IRU4|PDE4E_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoform F OS=Drosophila melanogaster
Align length 38
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921307|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_C04.
         (347 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IRU4|PDE4E_DROME cAMP-specific 3',5'-cyclic phosphodiestera...    30   3.7  
sp|Q9W4T0|PDE4D_DROME cAMP-specific 3',5'-cyclic phosphodiestera...    30   3.7  
sp|Q9W4S9|PDE4C_DROME cAMP-specific 3',5'-cyclic phosphodiestera...    30   3.7  
sp|P12252|PDE4B_DROME cAMP-specific 3',5'-cyclic phosphodiestera...    30   3.7  
sp|Q9W4T4|PDE4A_DROME cAMP-specific 3',5'-cyclic phosphodiestera...    30   3.7  
sp|Q09840|AMY2_SCHPO Alpha-amylase 2 OS=Schizosaccharomyces pomb...    30   3.7  
sp|P14270|PDE4D_RAT cAMP-specific 3',5'-cyclic phosphodiesterase...    30   4.8  
sp|Q01063|PDE4D_MOUSE cAMP-specific 3',5'-cyclic phosphodiestera...    30   4.8  
sp|Q08499|PDE4D_HUMAN cAMP-specific 3',5'-cyclic phosphodiestera...    30   4.8  
sp|Q62232|SIX2_MOUSE Homeobox protein SIX2 OS=Mus musculus GN=Si...    29   8.3  
sp|Q9NPC8|SIX2_HUMAN Homeobox protein SIX2 OS=Homo sapiens GN=SI...    29   8.3  

>sp|Q8IRU4|PDE4E_DROME cAMP-specific 3',5'-cyclic phosphodiesterase,
           isoform F OS=Drosophila melanogaster GN=dnc PE=2 SV=1
          Length = 662

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161 SGMSTRPLLTSKNAAAEVSDIQ-ITYIRHPIWKVYIAL 271
           SGM   P+    NA  E S +  I YI HP+W+ +  L
Sbjct: 514 SGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADL 551


>sp|Q9W4T0|PDE4D_DROME cAMP-specific 3',5'-cyclic phosphodiesterase,
           isoform M OS=Drosophila melanogaster GN=dnc PE=2 SV=2
          Length = 903

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161 SGMSTRPLLTSKNAAAEVSDIQ-ITYIRHPIWKVYIAL 271
           SGM   P+    NA  E S +  I YI HP+W+ +  L
Sbjct: 755 SGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADL 792


>sp|Q9W4S9|PDE4C_DROME cAMP-specific 3',5'-cyclic phosphodiesterase,
           isoforms N/G OS=Drosophila melanogaster GN=dnc PE=2 SV=2
          Length = 983

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161 SGMSTRPLLTSKNAAAEVSDIQ-ITYIRHPIWKVYIAL 271
           SGM   P+    NA  E S +  I YI HP+W+ +  L
Sbjct: 835 SGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADL 872


>sp|P12252|PDE4B_DROME cAMP-specific 3',5'-cyclic phosphodiesterase
            OS=Drosophila melanogaster GN=dnc PE=1 SV=4
          Length = 1070

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161  SGMSTRPLLTSKNAAAEVSDIQ-ITYIRHPIWKVYIAL 271
            SGM   P+    NA  E S +  I YI HP+W+ +  L
Sbjct: 922  SGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADL 959


>sp|Q9W4T4|PDE4A_DROME cAMP-specific 3',5'-cyclic phosphodiesterase,
            isoform I OS=Drosophila melanogaster GN=dnc PE=1 SV=2
          Length = 1209

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161  SGMSTRPLLTSKNAAAEVSDIQ-ITYIRHPIWKVYIAL 271
            SGM   P+    NA  E S +  I YI HP+W+ +  L
Sbjct: 1061 SGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADL 1098


>sp|Q09840|AMY2_SCHPO Alpha-amylase 2 OS=Schizosaccharomyces pombe
           GN=aah2 PE=1 SV=1
          Length = 581

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 176 LYSFLKFTLYKLATPITWSADGCGCQCSMLRLLFEKL 66
           L SFL F LY    PITW+ +  G QC  L +   ++
Sbjct: 274 LDSFLNFPLY---WPITWAFNNTGLQCEALAIAINQI 307


>sp|P14270|PDE4D_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4D
           OS=Rattus norvegicus GN=Pde4d PE=1 SV=4
          Length = 803

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 164 GMSTRPLLTSKNAAAEVSDIQ-ITYIRHPIWKVYIAL 271
           GM   P+    NA+ E S +  I YI HP+W+ +  L
Sbjct: 648 GMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADL 684


>sp|Q01063|PDE4D_MOUSE cAMP-specific 3',5'-cyclic phosphodiesterase
           4D OS=Mus musculus GN=Pde4d PE=2 SV=2
          Length = 747

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 164 GMSTRPLLTSKNAAAEVSDIQ-ITYIRHPIWKVYIAL 271
           GM   P+    NA+ E S +  I YI HP+W+ +  L
Sbjct: 592 GMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADL 628


>sp|Q08499|PDE4D_HUMAN cAMP-specific 3',5'-cyclic phosphodiesterase
           4D OS=Homo sapiens GN=PDE4D PE=1 SV=2
          Length = 809

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 164 GMSTRPLLTSKNAAAEVSDIQ-ITYIRHPIWKVYIAL 271
           GM   P+    NA+ E S +  I YI HP+W+ +  L
Sbjct: 653 GMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADL 689


>sp|Q62232|SIX2_MOUSE Homeobox protein SIX2 OS=Mus musculus GN=Six2
           PE=1 SV=2
          Length = 296

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 49  NLERAINFSKSNLNIEH*HPHPSALQVMGVASLYNVNFRNEYK 177
           N+ER   F  S    EH H + S L+   V + +  NFR  YK
Sbjct: 26  NIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYK 68
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921307|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_C04.
         (347 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******