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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921318
Clone id YMU001_000148_D07
Library
Length 339
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTCTTCATTTTTTTTATATATTTTTCTACATCCTCATCTTCCGAGTGCAATGAGGCACTG
TCCTGAAAATCTGCCTCTTCCTCCCTCATAGTTGCGTCCACCTCCTTCAGATTTTGGTCT
TCTGATTTGCGTCTAAGCTCTCTTGAAACCCTGTAGCCACCCTGTGACTGTCTGCCACTT
CTGTAAGACAGAGGCTCATTAACTCTTTGATCACGAGAGCTCTCTTTAGACCTAGACCGC
CTTCTTTTGTCTGTGTGCTCCCCGTAACCTCCTCTAGACCTTGATCTTTTCCTGTTCATA
TTATCTCTGCCAGCTTCTAGCATACATGATCTCCTCCTC
■■Homology search results ■■ -
sp_hit_id P54122
Definition sp|P54122|RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum
Align length 82
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921318|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_D07.
         (339 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54122|RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum...    32   0.99 
sp|Q8LST2|WNK7_ARATH Probable serine/threonine-protein kinase WN...    32   1.3  
sp|A1A008|PNP_BIFAA Polyribonucleotide nucleotidyltransferase OS...    32   1.3  
sp|Q6CVG9|ATG11_KLULA Autophagy-related protein 11 OS=Kluyveromy...    31   1.7  
sp|Q99081|HTF4_HUMAN Transcription factor 12 OS=Homo sapiens GN=...    30   2.9  
sp|Q9UER7|DAXX_HUMAN Death domain-associated protein 6 OS=Homo s...    30   2.9  
sp|P53094|MDS3_YEAST Negative regulator of sporulation MDS3 OS=S...    30   4.9  
sp|Q4PA27|JIP5_USTMA WD repeat-containing protein JIP5 OS=Ustila...    30   4.9  
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=O...    29   6.4  
sp|Q869T7|PAKF_DICDI Serine/threonine-protein kinase pakF OS=Dic...    29   6.4  
sp|P81066|IRX2_MOUSE Iroquois-class homeodomain protein IRX-2 OS...    29   6.4  
sp|Q01042|IE68_SHV21 Immediate-early protein OS=Saimiriine herpe...    29   6.4  
sp|A2VD23|STM_DANRE Protein starmaker OS=Danio rerio GN=stm PE=2...    29   8.4  
sp|Q9YBD4|PYRB_AERPE Aspartate carbamoyltransferase OS=Aeropyrum...    29   8.4  
sp|Q63312|PHLB1_RAT Pleckstrin homology-like domain family B mem...    29   8.4  
sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens ...    29   8.4  
sp|O18805|DAXX_CERAE Death domain-associated protein 6 OS=Cercop...    29   8.4  
sp|Q24270|CAC1D_DROME Voltage-dependent calcium channel type D s...    29   8.4  

>sp|P54122|RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum
           GN=Cgl1970 PE=3 SV=2
          Length = 718

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -2

Query: 317 EAGRDNMNRKRSRSRGGYGEHTDXXXXXXXXXXXRDQRVNEPLSYRSGRQS-QGGYRVSR 141
           E+G +N NR  +  RGG G                    NE  +  SG Q+ QGG R +R
Sbjct: 78  ESGNNNRNRSNNNRRGGRGRR-------------GSGNANEGANNNSGNQNRQGGNRGNR 124

Query: 140 ELRRKSEDQNLKEVDATMREEE 75
              R++  ++++  D T R  E
Sbjct: 125 GGGRRNVVKSMQGADLTQRLPE 146


>sp|Q8LST2|WNK7_ARATH Probable serine/threonine-protein kinase WNK7
           OS=Arabidopsis thaliana GN=WNK7 PE=2 SV=1
          Length = 557

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = -2

Query: 188 SYRSGRQSQGGYRVSRELRR----KSEDQNLKEVDATMREEEADFQDSASLHSEDEDVEK 21
           ++++G  SQ G  +S  L      +S+D+    V AT  ++EA+   S     EDE +++
Sbjct: 458 NHQNGASSQAGESISHSLSSDYCPRSDDEANPTVAATTEDQEAEKPGSLEEEEEDERLKE 517

Query: 20  YIKKMK 3
            ++K++
Sbjct: 518 ELEKIE 523


>sp|A1A008|PNP_BIFAA Polyribonucleotide nucleotidyltransferase
           OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
           20083) GN=pnp PE=3 SV=1
          Length = 892

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -2

Query: 212 DQRVNEPLSYRSGRQSQGGYRVSRELRRKSEDQNLKEVD------ATMREEEADFQDSAS 51
           DQ  + P   R  R  + G R  R+ RR+S+D++ ++ D       + R+++ D+ D   
Sbjct: 734 DQESSAPRRDRGDRDDRRGGRGRRDDRRRSDDRDDRDYDDRPRRRRSDRDDDRDYDDRPR 793

Query: 50  LHSEDEDVEKY 18
               D D   Y
Sbjct: 794 RRRSDRDDRDY 804


>sp|Q6CVG9|ATG11_KLULA Autophagy-related protein 11 OS=Kluyveromyces
           lactis GN=ATG11 PE=3 SV=1
          Length = 1046

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
 Frame = -2

Query: 170 QSQGGYRVSRELRRKSEDQN-LKE---VDATMREEEADFQDSASLHSEDEDVEKYIKKMK 3
           Q++   R S E RRKSED N +KE   V+   +E +A+ Q+ ASL  E E ++K + +++
Sbjct: 664 QNEELVRESEESRRKSEDLNKMKEDLLVNMATQEVQAE-QERASLQEEVESLKKDLNQLQ 722


>sp|Q99081|HTF4_HUMAN Transcription factor 12 OS=Homo sapiens
           GN=TCF12 PE=1 SV=1
          Length = 682

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 188 SYRSGRQSQGGYRVSRELR--RKSEDQNLKEVDATMREEEADFQDSASLHSEDEDVEKYI 15
           +YR G QSQ G  V+ E++   K +D+NL E  +           S  + S+DE  +K I
Sbjct: 501 NYRGGLQSQSGTVVTTEIKTENKEKDENLHEPPS-----------SDDMKSDDESSQKDI 549

Query: 14  K 12
           K
Sbjct: 550 K 550


>sp|Q9UER7|DAXX_HUMAN Death domain-associated protein 6 OS=Homo
           sapiens GN=DAXX PE=1 SV=2
          Length = 740

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = -2

Query: 179 SGRQSQGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDEDVEK 21
           SG  SQG    SR    +++D++ +E D    EEE + ++ A+   E+ED+E+
Sbjct: 420 SGMASQGCPSASRA---ETDDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQ 469


>sp|P53094|MDS3_YEAST Negative regulator of sporulation MDS3
            OS=Saccharomyces cerevisiae GN=MDS3 PE=1 SV=1
          Length = 1487

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -2

Query: 191  LSYRSGRQSQGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDEDVEKYIK 12
            ++Y S   S      S +L  K E + L+++    RE+ A+  D+   + ED+ V K I 
Sbjct: 1257 MNYGSISSSSTNSISSSDLEEKEEQEQLQDLLEIEREDSAEILDARFRNKEDDKVTKDIS 1316

Query: 11   KMK 3
              K
Sbjct: 1317 NDK 1319


>sp|Q4PA27|JIP5_USTMA WD repeat-containing protein JIP5 OS=Ustilago
           maydis GN=JIP5 PE=3 SV=1
          Length = 489

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = -2

Query: 212 DQRVNEPLSYRSGRQSQGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDE 33
           D  V +P S +  ++S+   ++ ++ RR  + + LKE D   RE+ A   +++   SED+
Sbjct: 184 DLPVPKPKSIKEAKKSKT--QLKKQRRRARQAERLKEHDKEKREQNASDTEASEPDSEDD 241


>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42
           OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2
           SV=1
          Length = 1049

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
 Frame = -2

Query: 296 NRKRSRSRGGYGEHTDXXXXXXXXXXXRDQRVNEPLSYRSGRQSQGGYRVSRELRRKSED 117
           +R+RS SR  + E  D            D R  +    R  R+ +   R  R+ R + E 
Sbjct: 33  DRERSSSRHHHREDRD------------DDRDRDRDRERRHREKERD-REERKAREREER 79

Query: 116 QNLKEVDATMREEEADFQD-----SASLHSEDEDVEKYIKKMK 3
           +  KE +   R EE D ++      A+   E+EDV++  K+ +
Sbjct: 80  EKEKERERARRREERDREERSRRREAAAEEEEEDVDRDRKRRR 122


>sp|Q869T7|PAKF_DICDI Serine/threonine-protein kinase pakF
           OS=Dictyostelium discoideum GN=pakF PE=3 SV=1
          Length = 1176

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -2

Query: 164 QGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDEDVEKY 18
           +G Y   R+ + + ED      +   +++E D +D    + +DEDV+ +
Sbjct: 743 KGNYTTCRDFQEEEEDSKHLNNNQDEQDDEQDDEDDDDENEDDEDVDPF 791
tr_hit_id Q2R0N2
Definition tr|Q2R0N2|Q2R0N2_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica
Align length 69
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921318|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_D07.
         (339 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2R0N2|Q2R0N2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    35   1.9  
tr|B8BLI4|B8BLI4_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.9  
tr|Q2QQT8|Q2QQT8_ORYSJ Zinc knuckle family protein OS=Oryza sati...    35   2.5  
tr|B6KVG6|B6KVG6_TOXGO Putative uncharacterized protein OS=Toxop...    35   2.5  
tr|B0EJQ4|B0EJQ4_ENTDI Putative uncharacterized protein (Fragmen...    35   2.5  
tr|Q4Z0Q5|Q4Z0Q5_PLABE BIR protein (Fragment) OS=Plasmodium berg...    34   3.2  
tr|Q4YH40|Q4YH40_PLABE BIR protein, putative OS=Plasmodium bergh...    34   3.2  
tr|A5E338|A5E338_LODEL Putative uncharacterized protein OS=Lodde...    34   3.2  
tr|Q7ZYY1|Q7ZYY1_DANRE Peptidyl-prolyl cis-trans isomerase OS=Da...    33   5.5  
tr|Q2QT17|Q2QT17_ORYSJ Zinc knuckle family protein OS=Oryza sati...    33   5.5  
tr|A8P422|A8P422_COPC7 Predicted protein OS=Coprinopsis cinerea ...    33   5.5  
tr|Q0IRG1|Q0IRG1_ORYSJ Os11g0639000 protein OS=Oryza sativa subs...    33   7.2  
tr|A2ZG98|A2ZG98_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.2  
tr|B8MHN2|B8MHN2_9EURO Putative uncharacterized protein OS=Talar...    33   7.2  
tr|B7XWZ4|B7XWZ4_RUMHA Putative uncharacterized protein OS=Blaut...    33   9.3  
tr|A9UZI0|A9UZI0_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.3  

>tr|Q2R0N2|Q2R0N2_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os11g42000 PE=4 SV=2
          Length = 232

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = -2

Query: 209 QRVNEPLSYRSGRQSQGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDED 30
           QR  E L+Y+  RQ +      +E+ R+ E   LKE D   RE E   +   +  SEDE 
Sbjct: 144 QRCAEKLAYK--RQKEKEREKEKEISREKE-MELKERDKRKREREGSEETEDT--SEDES 198

Query: 29  VEKYIKKMK 3
            EKY ++ K
Sbjct: 199 TEKYSRRKK 207


>tr|B8BLI4|B8BLI4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36803 PE=4 SV=1
          Length = 256

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = -2

Query: 209 QRVNEPLSYRSGRQSQGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDED 30
           QR  E L+Y+  RQ +      +E+ R+ E   LKE D   RE E   +   +  SEDE 
Sbjct: 168 QRCAEKLAYK--RQKEKEREKEKEISREKE-MELKERDKRKREREGSEETEDT--SEDES 222

Query: 29  VEKYIKKMK 3
            EKY ++ K
Sbjct: 223 TEKYSRRKK 231


>tr|Q2QQT8|Q2QQT8_ORYSJ Zinc knuckle family protein OS=Oryza sativa
           subsp. japonica GN=LOC_Os12g29900 PE=4 SV=1
          Length = 403

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
 Frame = -2

Query: 182 RSGRQSQGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDE---DVEKYIK 12
           +S ++  GGY++ ++L+++      K+++A +RE +++ + SAS  SE+E   D     K
Sbjct: 275 KSSKKKSGGYKLMKKLKKEG-----KKIEAVIREWDSNEESSASSGSEEEGGDDASSKKK 329

Query: 11  KM 6
           KM
Sbjct: 330 KM 331


>tr|B6KVG6|B6KVG6_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_010270 PE=4 SV=1
          Length = 1897

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 6/51 (11%)
 Frame = -2

Query: 143 RELRRKS--EDQNLKEVDATMREEEADFQDS----ASLHSEDEDVEKYIKK 9
           +EL+R+S  ED++LK+V+A +RE EA  Q +    ASL +E   +++ I+K
Sbjct: 577 QELQRRSQIEDRDLKDVEAILREREASDQQARQKIASLEAERTQLQRDIQK 627


>tr|B0EJQ4|B0EJQ4_ENTDI Putative uncharacterized protein (Fragment)
           OS=Entamoeba dispar SAW760 GN=EDI_225570 PE=4 SV=1
          Length = 266

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = -2

Query: 182 RSGRQSQGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDEDVEKYIKK 9
           +S  +S+ G  +S EL+  SE+    E + +M EEE +  +S    SE+++ +K I++
Sbjct: 76  KSNEESEEGNSMSEELKESSEENESNEENYSMSEEEEN-NESNKEESEEDEADKLIQQ 132


>tr|Q4Z0Q5|Q4Z0Q5_PLABE BIR protein (Fragment) OS=Plasmodium berghei
           GN=PB103184.00.0 PE=4 SV=1
          Length = 287

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 200 NEPLSYRSGRQSQGGYR-VSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDEDVE 24
           N+  S    R  QGG + V+ E  + SED+   E +A   E+EAD +D A L  E+ED E
Sbjct: 176 NKKQSNNHQRSIQGGKQPVTEEPSQISEDEADSEDEADS-EDEADSEDEADLEGEEEDSE 234

Query: 23  K 21
           +
Sbjct: 235 Q 235


>tr|Q4YH40|Q4YH40_PLABE BIR protein, putative OS=Plasmodium berghei
           GN=PB500039.00.0 PE=4 SV=1
          Length = 876

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 200 NEPLSYRSGRQSQGGYR-VSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDEDVE 24
           N+  S    R  QGG + V+ E  + SED+   E +A   E+EAD +D A L  E+ED E
Sbjct: 315 NKKQSNNHQRSIQGGKQPVTEEPSQISEDEADSEDEADS-EDEADSEDEADLEGEEEDSE 373

Query: 23  K 21
           +
Sbjct: 374 Q 374


>tr|A5E338|A5E338_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_04025 PE=3 SV=1
          Length = 1380

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
 Frame = -2

Query: 317 EAGRDNMNRKRSRSRGGYGEHTDXXXXXXXXXXXRDQRVN---EPLSYRSGRQS-QGGYR 150
           E   D+  ++RS  R  Y E  D            ++ V+     +S  +G  S Q G+ 
Sbjct: 17  EESDDHKPKRRSLKRASYKEEDDEDDEYNEFEKAVNEEVDLAKNTVSQNNGNSSEQNGHE 76

Query: 149 VSRELRRKSEDQNLKEVDATMREEEAD-FQDSASLHSEDEDVEKY 18
           V  E R  +     +E D    EEE D   + +S   +D+D E Y
Sbjct: 77  VGNEGREVAVKNEEEEHDEEEEEEEEDPLAEPSSPEKDDDDEEDY 121


>tr|Q7ZYY1|Q7ZYY1_DANRE Peptidyl-prolyl cis-trans isomerase OS=Danio
           rerio GN=ppig PE=1 SV=1
          Length = 687

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
 Frame = -2

Query: 338 RRRSCMLEAGRDNMNRKRSRSRGGYGEHTDXXXXXXXXXXXRDQRVNEPLSYRSGRQSQG 159
           R RS   E GRD   R RSR RG  G+  D           RD+R +     ++  +S+ 
Sbjct: 534 RERSRSKEKGRDVSRRSRSRGRGQRGQSRD---------RGRDRRHSSSRERKTSHRSRS 584

Query: 158 GYRV---SRELRRKSEDQNLKEVDATMR-EEEADFQDSASLHSED 36
             R      E RRKS D   +E     R  +E   Q   S   ED
Sbjct: 585 RERARGRDAEDRRKSADNKSRETRGRDRSSKERSSQKQRSRERED 629


>tr|Q2QT17|Q2QT17_ORYSJ Zinc knuckle family protein OS=Oryza sativa
           subsp. japonica GN=LOC_Os12g22180 PE=4 SV=1
          Length = 412

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
 Frame = -2

Query: 182 RSGRQSQGGYRVSRELRRKSEDQNLKEVDATMREEEADFQDSASLHSEDE---DVEKYIK 12
           +S ++  GGY++ ++L+++      K+++A +RE +++ + SAS  SE+E   D     K
Sbjct: 300 KSSKKKSGGYKLMKKLKKER-----KKIEAFIREWDSNKESSASSGSEEEGGDDASSKKK 354

Query: 11  KM 6
           KM
Sbjct: 355 KM 356