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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921320
Clone id YMU001_000148_D09
Library
Length 311
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTTAGGCTCCTATCATTGATCTCTCTAACTTTTTCCCTTTAGTGTCCTGGCTATTCTTCC
TCTACAAATGGAATTCCATCTAAGGCATCTTCGCTGTCCGGCACTGTAAGTTCTGGTTCT
TTTGTTTCAACGTGAGGTTCTACCACCACTTCGGATTTTACTTTAGTGTCTCTTATCACA
AGCTCTTCATGTATTGCAATACTTTCAAGCTTGGGTTATTATTTCCCCAGCATTTCTTGT
GTGATTCTTACCAAATTTTGATAAGCTTCAAGCTTAGCTGCTTCCATGTCTGGAGAAGGA
TAGTTTTTCCA
■■Homology search results ■■ -
sp_hit_id O67825
Definition sp|O67825|IF2_AQUAE Translation initiation factor IF-2 OS=Aquifex aeolicus
Align length 42
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921320|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_D09.
         (311 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O67825|IF2_AQUAE Translation initiation factor IF-2 OS=Aquife...    30   3.7  
sp|P13611|CSPG2_HUMAN Versican core protein OS=Homo sapiens GN=V...    30   4.9  
sp|P02681|COAG_TACTR Coagulogen OS=Tachypleus tridentatus PE=1 SV=2    30   4.9  
sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE...    29   6.4  
sp|Q68FX6|CD035_RAT Uncharacterized protein C4orf35 homolog OS=R...    29   6.4  
sp|P15566|COAG_TACGI Coagulogen OS=Tachypleus gigas PE=1 SV=1          29   8.3  

>sp|O67825|IF2_AQUAE Translation initiation factor IF-2 OS=Aquifex
           aeolicus GN=infB PE=3 SV=1
          Length = 805

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 173 RDTKVKSEVVVEPHVETKEPELTVPDSEDALDGIPFVEEE*P 48
           ++ + K EV+VE  VE K+PE+ V + E+  +     EEE P
Sbjct: 83  KEEEKKEEVIVEEVVEEKKPEVIVEEIEEKKEEEEKKEEEKP 124


>sp|P13611|CSPG2_HUMAN Versican core protein OS=Homo sapiens GN=VCAN
            PE=1 SV=3
          Length = 3396

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = -1

Query: 305  NYPSPDMEAAKLEAYQNLVRITQEMLGK**PKLESIAIHEELVIRDTKVKSEVVVEPHVE 126
            N  +PD +A  LE+Y  L   T++        L + +I  E V+ D+ +K E   +   +
Sbjct: 2179 NMSTPDPDANGLESYTTLPEATEKSHFFLATALVTESIPAEHVVTDSPIKKEESTKHFPK 2238

Query: 125  TKEPELTVPDSEDALDGIPFVEEE*P 48
               P +   D+E    G+   EE  P
Sbjct: 2239 GMRPTIQESDTELLFSGLGSGEEVLP 2264


>sp|P02681|COAG_TACTR Coagulogen OS=Tachypleus tridentatus PE=1 SV=2
          Length = 195

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 162 FSV-SYHKLFMYCNTFKLGLLFPQHFLCDSYQILISFKLSC 281
           FS+ S+H +F  C  ++   + P+H  C ++     FKL C
Sbjct: 68  FSIFSHHPVFRECGKYECRTVRPEHSRCYNFPPFTHFKLEC 108


>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
          Length = 18141

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 185   ELVIRDTKVKSEVVVEPHVETKEPELTVPDSEDALDGIPFVEE 57
             E+VI+++K    V  + H++TK+P+  V D E     I   EE
Sbjct: 15613 EIVIKESKPAEVVTEDAHIKTKKPKKKVTDVEAEELKIKITEE 15655


>sp|Q68FX6|CD035_RAT Uncharacterized protein C4orf35 homolog
           OS=Rattus norvegicus GN=Rsd6 PE=2 SV=1
          Length = 390

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 209 LESIAIHEELVIRDTKVKSEVVVEPHVETK-EPELTVPDSEDALDGIPFVEEE*P 48
           L ++    + V+  ++  S VV EPHV+TK  PE      +DA + +  V EE P
Sbjct: 307 LTAVESRYDFVVTASETNSVVVEEPHVDTKNSPE------KDAAESVTNVTEEFP 355


>sp|P15566|COAG_TACGI Coagulogen OS=Tachypleus gigas PE=1 SV=1
          Length = 175

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 171 SYHKLFMYCNTFKLGLLFPQHFLCDSYQILISFKLSC 281
           S+H +F  C  ++   + P+H  C ++   I FK  C
Sbjct: 52  SHHPVFRECGKYECRTVRPEHSRCYNFPPFIHFKSEC 88
tr_hit_id B4L1K7
Definition tr|B4L1K7|B4L1K7_DROMO GI15861 OS=Drosophila mojavensis
Align length 64
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921320|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_D09.
         (311 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4L1K7|B4L1K7_DROMO GI15861 OS=Drosophila mojavensis GN=GI158...    37   0.65 
tr|B4K3L6|B4K3L6_DROGR GH11744 (Fragment) OS=Drosophila grimshaw...    35   2.5  
tr|B0XK34|B0XK34_CULQU Microtubule-associated protein OS=Culex q...    35   2.5  
tr|Q4YNF4|Q4YNF4_PLABE Putative uncharacterized protein (Fragmen...    34   4.2  
tr|B5XFC0|B5XFC0_SALSA P2Y purinoceptor 1 OS=Salmo salar GN=P2RY...    33   5.5  
tr|Q7TFU0|Q7TFU0_RHCM6 Rh41 OS=Rhesus cytomegalovirus (strain 68...    33   5.5  
tr|Q2FAS9|Q2FAS9_9BETA Rh41 OS=Macacine herpesvirus 3 PE=4 SV=1        33   5.5  
tr|Q5URQ2|Q5URQ2_9HEMI ATP synthase subunit a OS=Vasdavidius con...    33   7.2  
tr|B6MV28|B6MV28_BRAFL Putative uncharacterized protein OS=Branc...    33   7.2  
tr|B3L942|B3L942_PLAKH Putative uncharacterized protein OS=Plasm...    33   7.2  
tr|A5K343|A5K343_PLAVI Putative uncharacterized protein OS=Plasm...    33   7.2  
tr|B2ARB0|B2ARB0_PODAN Predicted CDS Pa_4_8070 OS=Podospora anse...    33   7.2  
tr|Q8TSL1|Q8TSL1_METAC Proteophosphoglycan OS=Methanosarcina ace...    33   7.2  
tr|Q91226|Q91226_ORENI Glutamate receptor subunit 2B OS=Oreochro...    33   9.3  
tr|Q91224|Q91224_ORENI Glutamate receptor subunit 2B OS=Oreochro...    33   9.3  
tr|Q17EI1|Q17EI1_AEDAE Putative uncharacterized protein (Fragmen...    33   9.3  

>tr|B4L1K7|B4L1K7_DROMO GI15861 OS=Drosophila mojavensis GN=GI15861
           PE=4 SV=1
          Length = 412

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 111 FWFFCFNVRFYHHFGFYFSVSYHKLFMYCNTFKLGLLFPQHFLCDSYQILISFKLSCFHV 290
           +++F F   FY +F FYF   ++  F +   F     F  +F  D+   L+ +   CF V
Sbjct: 337 YFYFYFYFYFYFYFSFYFYFYFYFYFYFYFYFSFSFYFYFYFSRDAEYYLVWYSRLCFLV 396

Query: 291 WRRI 302
           +  I
Sbjct: 397 YANI 400


>tr|B4K3L6|B4K3L6_DROGR GH11744 (Fragment) OS=Drosophila grimshawi
           GN=GH11744 PE=4 SV=1
          Length = 55

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 10/49 (20%), Positives = 27/49 (55%)
 Frame = +3

Query: 48  WLFFLYKWNSI*GIFAVRHCKFWFFCFNVRFYHHFGFYFSVSYHKLFMY 194
           + F+ Y +N     +   +C ++++C+   +Y+++ +Y +  YH  + Y
Sbjct: 6   YYFYYYYYNYYYNYYYYYYCYYYYYCYYCYYYYYYYYYNNYIYHNDYYY 54


>tr|B0XK34|B0XK34_CULQU Microtubule-associated protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ019497 PE=4 SV=1
          Length = 649

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = -1

Query: 209 LESIAIHEELVIRDTKVKSEVVVEPHVETKEPELTVPD 96
           +ES+   +++++ ++K ++EVV EP    ++P+L  PD
Sbjct: 210 VESVVQEQQIIVTESKTEAEVVAEPEPVKEQPQLVEPD 247


>tr|Q4YNF4|Q4YNF4_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB108587.00.0 PE=4 SV=1
          Length = 128

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = +3

Query: 27  NFFPL-----VSWLFFLYKWNSI*GIFAVRHCKFWFFCFNVRFYHHFGFYFSVSYHKLFM 191
           NFF +     +S+++F +K   +  +  +     +FF FN  ++ +F  +F  ++  +F 
Sbjct: 27  NFFKIMILFHISFIYF-HKLFCLINLCFIIFAMIFFFIFNFFYFLYFIIFFIKNFQLMF- 84

Query: 192 YCNTFKLGLLFPQHFLCDSYQILISFKLSCFHVWRRIVFP 311
               F + + +P  F C S   L S   +CF+  +R+  P
Sbjct: 85  ----FVIWVFYPILFSCSSIFALFSAFSTCFNPIKRLKRP 120


>tr|B5XFC0|B5XFC0_SALSA P2Y purinoceptor 1 OS=Salmo salar GN=P2RY1
           PE=2 SV=1
          Length = 339

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 12  IIDLSNFFPLVSWLFFLYKWNSI*GIFAVRHCKFWFFCFNVRFYHHFGFYFSVSYHKLFM 191
           + DL   F L  +L   Y  NS   IF    CK   FCFN+  Y   GF   +S ++   
Sbjct: 68  VADLLYLFTL-PFLVVYYALNSK-WIFGQTFCKITRFCFNLNLYCSIGFLTCISIYRYLG 125

Query: 192 YCNTFK-LGLLFPQHFLCDSYQILI 263
             +  K +G +  +H +  S+ + I
Sbjct: 126 IVHPMKVMGKIHTRHSVAISFLVWI 150


>tr|Q7TFU0|Q7TFU0_RHCM6 Rh41 OS=Rhesus cytomegalovirus (strain 68-1)
           PE=4 SV=1
          Length = 126

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 186 RACDKRH*SKIRSGGRTSR*NKRT-RTYSAGQRRCLRW 76
           R CD+R  S   S  RT R  +RT RT S GQ RC+RW
Sbjct: 13  RYCDRR--SSSFSAFRTERQRRRTTRTRSLGQGRCMRW 48


>tr|Q2FAS9|Q2FAS9_9BETA Rh41 OS=Macacine herpesvirus 3 PE=4 SV=1
          Length = 126

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 186 RACDKRH*SKIRSGGRTSR*NKRT-RTYSAGQRRCLRW 76
           R CD+R  S   S  RT R  +RT RT S GQ RC+RW
Sbjct: 13  RYCDRR--SSSFSAFRTERQRRRTTRTRSLGQGRCMRW 48


>tr|Q5URQ2|Q5URQ2_9HEMI ATP synthase subunit a OS=Vasdavidius
           concursus GN=atp6 PE=3 SV=1
          Length = 208

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +3

Query: 30  FFPLVSWLFFLYKWNSI*GIFAVRHCKFWFFCFNVRFYHHFGFYFSVSYHKLFMYCNTFK 209
           FF  +  LF  Y       +F V    F+F+ F V F     + FSVS H  F++C +F 
Sbjct: 45  FFSFMYNLFISYFNYKFFNLFIVFFISFFFYLFFVNFLGLLPYVFSVSSH--FVFCLSFS 102

Query: 210 L 212
           L
Sbjct: 103 L 103


>tr|B6MV28|B6MV28_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_87084 PE=4 SV=1
          Length = 855

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 102 HCKFWFFCFNVRFYHHFGFYFSVSYHKLFMYCNTFKLGLLFPQHFLCDSYQILISFKLSC 281
           H  +++ C+    Y+ + FYFS SY+  + Y         +  HF C  Y    ++   C
Sbjct: 241 HRYYYYRCY----YYFYCFYFSSSYYHYYYY--------YYYYHFCCYYYYSYSNYYCCC 288

Query: 282 FHVW 293
           +H++
Sbjct: 289 YHLY 292


>tr|B3L942|B3L942_PLAKH Putative uncharacterized protein
           OS=Plasmodium knowlesi (strain H) GN=PKH_123380 PE=4
           SV=1
          Length = 415

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 87  IFAVRHCKFWFFCFNVRFYHHFGFYFSVSYHKLFMYCNTFKLG 215
           + ++  C FWFFC  V F   F F F +S    F+Y N    G
Sbjct: 298 VLSIFPCIFWFFCDTVVFLFLFVFLFFLSVCLFFIYNNDMYSG 340