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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921334
Clone id YMU001_000148_F01
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGAAGAAGGTAAGATCACATAGACCAACACTGTAAAGATAAAAAATACTAGGCGGAACCT
GCTAGTCAAATCCTCAATGTCTACATGAAAATGTATGCTATATGTCTGCCGATTGATTTC
TGCAACTTAATGCAGACAAAATTGGGCAGTTGTCACCTTGAAATAGCACCATACTGTCAT
TGTCCACGTCCATGTATTCCCAAAACAGTACTACTTGGCAAGCTGAGGATGCCTTCTCAG
TTTCTCAACAGAAAAGTGCATAACCAGGATTCTTGAAGACAAGTCAAGAAGAAATATAAT
ACACATCTTGGCAGTGAAAGCTATACACCAGAAGTCACATACATCATCGGCCAAATCTGC
CTCTACCTCTGCCTCGAACACCCCCTCCACCTTGCCCGCGGAAAGCCATTCGATTATCAC
GTAGATTAGCATCGTACTGGCGTGAACCCCATTGCCCATTGTAACCTCTTGTAGCTGCTT
GCAG
■■Homology search results ■■ -
sp_hit_id Q70KD4
Definition sp|Q70KD4|GLADA_MICEC Putative L-glutamine:3-amino-2,3-dideoxy-scyllo-inosose aminotransferase OS=Micromonospora echinospora
Align length 81
Score (bit) 33.1
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921334|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_F01.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q70KD4|GLADA_MICEC Putative L-glutamine:3-amino-2,3-dideoxy-s...    33   0.63 
sp|P32228|VC04_SWPVK Protein C4 OS=Swinepox virus (strain Kasza)...    32   1.8  
sp|O75298|RTN2_HUMAN Reticulon-2 OS=Homo sapiens GN=RTN2 PE=2 SV=1     32   1.8  
sp|A6NKB5|PCX2_HUMAN Pecanex-like protein 2 OS=Homo sapiens GN=P...    31   2.4  
sp|Q9D7P0|KRA33_MOUSE Keratin-associated protein 3-3 OS=Mus musc...    30   5.3  
sp|Q9BYR6|KRA33_HUMAN Keratin-associated protein 3-3 OS=Homo sap...    30   5.3  
sp|Q24JX9|KRA33_BOVIN Keratin-associated protein 3-3 OS=Bos taur...    30   5.3  
sp|Q9D638|KRA32_MOUSE Keratin-associated protein 3-2 OS=Mus musc...    30   5.3  
sp|Q1LP26|ATE_RALME Putative arginyl-tRNA--protein transferase O...    30   6.9  
sp|O83878|TRMD_TREPA tRNA (guanine-N(1)-)-methyltransferase OS=T...    29   9.1  

>sp|Q70KD4|GLADA_MICEC Putative
           L-glutamine:3-amino-2,3-dideoxy-scyllo-inosose
           aminotransferase OS=Micromonospora echinospora GN=gtmD
           PE=3 SV=1
          Length = 418

 Score = 33.1 bits (74), Expect = 0.63
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = -2

Query: 437 GVHASTMLIYVIIEWLSAGKVEGVFEAEVEADLADDVCDFWCI-------AFTAKMCIIF 279
           G+HA   +I     W+  G V G+        LAD   D WCI       A T +   I 
Sbjct: 85  GIHAGDEVITTAFTWV--GTVAGIVHVNAVPVLADISDDNWCIDPVKVEEAITDRTRAIM 142

Query: 278 LLDLSSRILVMHFSVEKLRRH 216
           ++ L +++  M   ++  RRH
Sbjct: 143 VVHLGNQVADMDALLDICRRH 163


>sp|P32228|VC04_SWPVK Protein C4 OS=Swinepox virus (strain Kasza)
           GN=C4L PE=3 SV=1
          Length = 530

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = -2

Query: 416 LIYVIIEWLSAGKVEGVFEAEVEADLADDVCDFWCIAFTAKMC---IIFLLDLSSRILVM 246
           ++Y+I+E++  G +      +   +L   VCD+ CI    K+C   I  ++D ++ I ++
Sbjct: 69  ILYIILEFMYTGNI---VLTKDNIELVIQVCDYLCIDSLIKICEEYICGIIDETNCIHLL 125

Query: 245 HFS-VEKLRRHPQLAK*Y 195
           +FS    L+R  +++K Y
Sbjct: 126 NFSDTYNLQRLREMSKWY 143


>sp|O75298|RTN2_HUMAN Reticulon-2 OS=Homo sapiens GN=RTN2 PE=2 SV=1
          Length = 545

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = -2

Query: 422 TMLIYVIIEWLSAGKVEGVFEAEVEADLADDVCDFWCIAFTAKMCIIFLLDLSSRILVMH 243
           T ++ V+++W  + +  GV    + AD+   V D      T    ++F   + S + ++H
Sbjct: 314 TPVLRVLLKWAKSPRSSGVPSLSLGADMGSKVADLLYWKDTRTSGVVFTGLMVSLLCLLH 373

Query: 242 FSVEKLRRH 216
           FS+  +  H
Sbjct: 374 FSIVSVAAH 382


>sp|A6NKB5|PCX2_HUMAN Pecanex-like protein 2 OS=Homo sapiens GN=PCNXL2
            PE=1 SV=3
          Length = 2137

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 188  GNTWTWTMTVWCYFKVTTAQFCLH*VAEINRQTYSIHFHVDIEDLTSRFRLVFFIFTVL 12
            G  W   + +    K+    FC      IN     I FH D +D++  F L FF+ ++L
Sbjct: 1218 GTHWDIFLMIIAGMKLLRTSFCNPVYQFINLSFTVIFFHFDYKDISESFLLDFFMVSIL 1276


>sp|Q9D7P0|KRA33_MOUSE Keratin-associated protein 3-3 OS=Mus
           musculus GN=Krtap3-3 PE=2 SV=1
          Length = 99

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 87  ICLPIDFCNLMQTKLGSCHLEIAPYCHCPRPCIPKTVLL 203
           +CLP    + +     +C     P CH P+PC+P   LL
Sbjct: 30  VCLPSTCPHTIWQLEPTCCDNCPPPCHIPQPCVPTCFLL 68


>sp|Q9BYR6|KRA33_HUMAN Keratin-associated protein 3-3 OS=Homo
           sapiens GN=KRTAP3-3 PE=1 SV=1
          Length = 98

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 87  ICLPIDFCNLMQTKLGSCHLEIAPYCHCPRPCIPKTVLL 203
           +CLP    + +     +C     P CH P+PC+P   LL
Sbjct: 30  VCLPSTCPHTVWLLEPTCCDNCPPPCHIPQPCVPTCFLL 68


>sp|Q24JX9|KRA33_BOVIN Keratin-associated protein 3-3 OS=Bos taurus
           GN=KRTAP3-3 PE=3 SV=1
          Length = 98

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 87  ICLPIDFCNLMQTKLGSCHLEIAPYCHCPRPCIPKTVLL 203
           +CLP    + +     +C     P CH P+PC+P   LL
Sbjct: 30  VCLPSTCPHTVWLLEPTCCDNCPPPCHIPQPCVPTCFLL 68


>sp|Q9D638|KRA32_MOUSE Keratin-associated protein 3-2 OS=Mus
           musculus GN=Krtap3-2 PE=2 SV=2
          Length = 99

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 87  ICLPIDFCNLMQTKLGSCHLEIAPYCHCPRPCIPKTVLL 203
           +CLP    + +     +C     P CH P+PC+P   LL
Sbjct: 30  VCLPSTCPHTIWQLEPTCCDNCPPPCHIPQPCVPTCFLL 68


>sp|Q1LP26|ATE_RALME Putative arginyl-tRNA--protein transferase
           OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
           DSM 2839) GN=ate PE=3 SV=1
          Length = 262

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/82 (24%), Positives = 30/82 (36%)
 Frame = +3

Query: 156 PYCHCPRPCIPKTVLLGKLRMPSQFLNRKVHNQDS*RQVKKKYNTHLGSESYTPEVTYII 335
           PYC   R C P  VL+ + R                R  ++ +  H G ++    +TY+ 
Sbjct: 64  PYCDECRACTPCRVLVDQFRPD--------------RSQRRAWRDHQGLQALVAPLTYVE 109

Query: 336 GQICLYLCLEHPLHLARGKPFD 401
               LYL  +   H   G   D
Sbjct: 110 EHYALYLLYQSMRHAGGGMDQD 131


>sp|O83878|TRMD_TREPA tRNA (guanine-N(1)-)-methyltransferase
           OS=Treponema pallidum GN=trmD PE=3 SV=1
          Length = 250

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
 Frame = -2

Query: 392 LSAGKVEGVFEAEVEADLADDVCDFWCIAFTAKMCIIFLLDLSSRI---LVMHFSVEK-- 228
           L  G+ EG+ +  ++  + D+VC    +  + ++  + L+D  SR    ++ H S+E+  
Sbjct: 107 LICGRYEGIDQRIIDEYVDDEVCIGNYVLSSGEIAALVLIDAVSRCVSGVIRHESLEEES 166

Query: 227 ----LRRHPQLAK*YCFGN 183
               L  +PQ  +  CF N
Sbjct: 167 FVNSLVEYPQYTRPRCFHN 185
tr_hit_id B2SZP9
Definition tr|B2SZP9|B2SZP9_BURPP Putative uncharacterized protein OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
Align length 40
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921334|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_F01.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2SZP9|B2SZP9_BURPP Putative uncharacterized protein OS=Burkh...    34   3.2  
tr|A6S1H2|A6S1H2_BOTFB Putative uncharacterized protein OS=Botry...    33   5.5  
tr|Q13W79|Q13W79_BURXL Putative uncharacterized protein OS=Burkh...    33   7.1  

>tr|B2SZP9|B2SZP9_BURPP Putative uncharacterized protein
           OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
           GN=Bphyt_2843 PE=4 SV=1
          Length = 102

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 404 IIEWLSAGKVEGVFEAEVEADLADDVCDFWCIAFTAKMCI 285
           + +WLSAG VE V +AE  AD A+   D W +  +  +C+
Sbjct: 60  VTQWLSAGLVERV-QAETAADFAERDPDLWAVVVSPWVCV 98


>tr|A6S1H2|A6S1H2_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_06669
           PE=4 SV=1
          Length = 544

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 455 EVTMGNGVHASTMLIYVIIEWLSAGKVEGVFEAEVE 348
           E++ GNGVH    LI + IE +  G VE  F  E E
Sbjct: 408 EISKGNGVHTHWQLIPMPIETIQKGLVEAAFRVEAE 443


>tr|Q13W79|Q13W79_BURXL Putative uncharacterized protein
           OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A3122
           PE=4 SV=1
          Length = 105

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 404 IIEWLSAGKVEGVFEAEVEADLADDVCDFWCIAFTAKMCI 285
           + +WLSAG VE V +AE  AD A    D W +  +  +C+
Sbjct: 63  VAQWLSAGLVERV-QAETAADFAAREPDLWAVVVSPWVCV 101