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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921337
Clone id YMU001_000148_F05
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGTACTGGTGATAGTAAAAAACGATGCACTATGTACACCCTGTCCTACCTGTACACAC
ATGGGCCCCACATAACCACCTGGCTCTAGAAAATGGGCAATTCTTTATTCGATGCACCAT
GCATGTGTATGTACATATGCGCAATTCCTTGCTCCAAAAAAATCCTAACATAATTTGCCC
ATCCCCTAGCTTGCTAGAGCATTCATGCTCAGCAACAACAACACTAGTAGATGCTCATTC
CACGTGGATCCCACACAAAAACACTTGGCATTCCTTGCATCAAAAGCTTAATCAAGGTTC
CACCTGGTTCCCAAGGGAAACCTATAGAGATACCATATATCAACTTTGCATAAAGAAAAC
CATCAATTACTTTGGCATAGACTTGCATGTGCAAATATATCTCCTCCTCCATGGCTGAGA
GGTCTCCACTGATCATTTGTGTCATCAATTCATGCTTCTTTGACGATTCAACCTTGTTTT
GCATCAGCCCTTCAATCACTTCATAAGGCCCTTCGCTTTCATCTTCGGCTTCATTCACAA
ATGCAACT
■■Homology search results ■■ -
sp_hit_id Q8AYC1
Definition sp|Q8AYC1|MRTFB_XENLA Myocardin-related transcription factor B OS=Xenopus laevis
Align length 56
Score (bit) 30.8
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921337|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_F05.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8AYC1|MRTFB_XENLA Myocardin-related transcription factor B O...    31   4.5  
sp|Q0HT65|RRF_SHESR Ribosome-recycling factor OS=Shewanella sp. ...    30   5.9  
sp|Q0HGV8|RRF_SHESM Ribosome-recycling factor OS=Shewanella sp. ...    30   5.9  
sp|A0KZ20|RRF_SHESA Ribosome-recycling factor OS=Shewanella sp. ...    30   5.9  
sp|Q8EGH2|RRF_SHEON Ribosome-recycling factor OS=Shewanella onei...    30   5.9  

>sp|Q8AYC1|MRTFB_XENLA Myocardin-related transcription factor B
           OS=Xenopus laevis GN=mrtfb PE=2 SV=1
          Length = 1067

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 68  PHNHLALENGQFFIRCTMHVYVHMRNSLLQKNPNIICPSPSLLEHSCSATTTLVDA 235
           P   LA +  Q  +  ++     ++ S++Q  P+ + P+P+ L  + + TTTL+ A
Sbjct: 689 PQALLATQTAQLLLPLSIKAANGVQLSMVQAQPHTVNPAPAQLSTAAATTTTLLSA 744


>sp|Q0HT65|RRF_SHESR Ribosome-recycling factor OS=Shewanella sp.
           (strain MR-7) GN=frr PE=3 SV=1
          Length = 185

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -2

Query: 541 FVNEAEDESEGPYEVIEGLMQNKVESSKKHELMTQMISGDLSAMEEEIYLHMQVYAKVID 362
           F+     E+EG    I  + ++ +   KK E   +    D+   E+E+      + K +D
Sbjct: 113 FIKVVRAEAEGGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVD 172

Query: 361 GFLYAKLI 338
             L AK I
Sbjct: 173 EILAAKEI 180


>sp|Q0HGV8|RRF_SHESM Ribosome-recycling factor OS=Shewanella sp.
           (strain MR-4) GN=frr PE=3 SV=1
          Length = 185

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -2

Query: 541 FVNEAEDESEGPYEVIEGLMQNKVESSKKHELMTQMISGDLSAMEEEIYLHMQVYAKVID 362
           F+     E+EG    I  + ++ +   KK E   +    D+   E+E+      + K +D
Sbjct: 113 FIKVVRAEAEGGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVD 172

Query: 361 GFLYAKLI 338
             L AK I
Sbjct: 173 EILAAKEI 180


>sp|A0KZ20|RRF_SHESA Ribosome-recycling factor OS=Shewanella sp.
           (strain ANA-3) GN=frr PE=3 SV=1
          Length = 185

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -2

Query: 541 FVNEAEDESEGPYEVIEGLMQNKVESSKKHELMTQMISGDLSAMEEEIYLHMQVYAKVID 362
           F+     E+EG    I  + ++ +   KK E   +    D+   E+E+      + K +D
Sbjct: 113 FIKVVRAEAEGGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVD 172

Query: 361 GFLYAKLI 338
             L AK I
Sbjct: 173 EILAAKEI 180


>sp|Q8EGH2|RRF_SHEON Ribosome-recycling factor OS=Shewanella
           oneidensis GN=frr PE=3 SV=1
          Length = 185

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -2

Query: 541 FVNEAEDESEGPYEVIEGLMQNKVESSKKHELMTQMISGDLSAMEEEIYLHMQVYAKVID 362
           F+     E+EG    I  + ++ +   KK E   +    D+   E+E+      + K +D
Sbjct: 113 FIKVVRAEAEGGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVD 172

Query: 361 GFLYAKLI 338
             L AK I
Sbjct: 173 EILAAKEI 180
tr_hit_id Q9LNG2
Definition tr|Q9LNG2|Q9LNG2_ARATH F21D18.19 OS=Arabidopsis thaliana
Align length 31
Score (bit) 34.7
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921337|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_F05.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LNG2|Q9LNG2_ARATH F21D18.19 OS=Arabidopsis thaliana PE=4 SV=1     35   3.4  
tr|Q9C7Z7|Q9C7Z7_ARATH Putative uncharacterized protein T2J15.1 ...    35   3.4  
tr|A8FXX6|A8FXX6_SHESH Putative uncharacterized protein OS=Shewa...    34   5.8  
tr|Q0YKG8|Q0YKG8_9DELT Aldehyde dehydrogenase OS=Geobacter sp. F...    34   5.8  
tr|Q8NM66|Q8NM66_CORGL NAD-dependent aldehyde dehydrogenases (PR...    33   7.5  
tr|A3WNH6|A3WNH6_9GAMM Type II secretory pathway, PulF-like OS=I...    33   7.5  
tr|B4L1F7|B4L1F7_DROMO GI15273 OS=Drosophila mojavensis GN=GI152...    33   9.8  

>tr|Q9LNG2|Q9LNG2_ARATH F21D18.19 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 168

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 171 MLGFFWSKELRICTYTCMV-HRIKNCPFSRA 82
           M+GF + K  RICT  C + H + NCPF  A
Sbjct: 1   MIGFEYEKLRRICTNCCRITHHVNNCPFLNA 31


>tr|Q9C7Z7|Q9C7Z7_ARATH Putative uncharacterized protein T2J15.1
           OS=Arabidopsis thaliana GN=At1g48095 PE=4 SV=1
          Length = 303

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 171 MLGFFWSKELRICTYTCMV-HRIKNCPFSRA 82
           M+GF + K  RICT  C + H + NCPF  A
Sbjct: 65  MIGFEYEKLRRICTNCCRITHHVNNCPFLNA 95


>tr|A8FXX6|A8FXX6_SHESH Putative uncharacterized protein
           OS=Shewanella sediminis (strain HAW-EB3) GN=Ssed_3095
           PE=4 SV=1
          Length = 594

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 25/102 (24%), Positives = 48/102 (47%)
 Frame = +2

Query: 104 FIRCTMHVYVHMRNSLLQKNPNIICPSPSLLEHSCSATTTLVDAHSTWIPHKNTWHSLHQ 283
           F  C    +V + N+  +K  ++I  + S  EHS + T + +          N     HQ
Sbjct: 397 FALCDTEYFVPLENAASRKLWSVIFANLSGHEHSEAPTNSTIIT--------NLGMQTHQ 448

Query: 284 KLNQGSTWFPRETYRDTIYQLCIKKTINYFGIDLHVQIYLLL 409
            +++ +TW    TY +   ++  ++ ++YF  DL  Q+ +LL
Sbjct: 449 NISRFATWL-NMTYPEGKSEVSTQEFVDYFNEDLTEQLSILL 489


>tr|Q0YKG8|Q0YKG8_9DELT Aldehyde dehydrogenase OS=Geobacter sp.
           FRC-32 GN=GeobDRAFT_2257 PE=4 SV=1
          Length = 539

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 400 IYLHMQVYAKVIDGFLYAKLIYGISIGFPWEPGGTLIKLLMQGMP 266
           I++H  +  K +  F  AK I  ++ G PWEPG  +  L   G P
Sbjct: 324 IFVHQSIAEKFVTSF--AKAITALTYGMPWEPGVVITPLPEPGKP 366


>tr|Q8NM66|Q8NM66_CORGL NAD-dependent aldehyde dehydrogenases
           (PROBABLE SUCCINATE-SEMIALDEHYDE DEHYDROGENASE
           OXIDOREDUCTASE) OS=Corynebacterium glutamicum GN=gabD1
           PE=4 SV=1
          Length = 521

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = -2

Query: 529 AEDESEGPYEVIEGLMQNKVESSKKHELMTQMISGDLSAMEEEIYLHMQVYAKVIDGFLY 350
           AE   + P  V +    +KVE+       +   SG L    E IY+   VY +VI  F  
Sbjct: 257 AELGGKNPLIVAKDADLDKVEAELPQACFSN--SGQLCVSTERIYVEEDVYEEVIARFSK 314

Query: 349 AKLIYGISIGFPWE-PGGTLIKLLMQGMPSVFV 254
           A     I  GF W+   G+LI        S FV
Sbjct: 315 AAKAMSIGAGFEWKYEMGSLINQAQLDRVSTFV 347


>tr|A3WNH6|A3WNH6_9GAMM Type II secretory pathway, PulF-like
           OS=Idiomarina baltica OS145 GN=OS145_05140 PE=4 SV=1
          Length = 348

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 218 TTLVDAHSTWIPHKNTWHSLHQKLNQGSTW 307
           T +V  HSTW+P ++    + Q LNQG++W
Sbjct: 235 TQMVANHSTWLPMQSKLLKIAQALNQGNSW 264


>tr|B4L1F7|B4L1F7_DROMO GI15273 OS=Drosophila mojavensis GN=GI15273
            PE=4 SV=1
          Length = 3747

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
 Frame = +1

Query: 394  NISPPPWLRGLH*SFVSSIHASLTIQPCFASALQSLHK----------ALRFHLRLHSQM 543
            NISPPP L G H S  SS  ++ T QP  +S+L SL             L+   +LH Q 
Sbjct: 2120 NISPPPPLGGTH-STSSSASSTATSQPASSSSLSSLASQSQQQVPVAATLQHRQQLHKQQ 2178

Query: 544  Q 546
            Q
Sbjct: 2179 Q 2179