BP921340 |
Clone id |
YMU001_000148_F09 |
Library |
YMU01 |
Length |
507 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000148_F09. |
Accession |
BP921340 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGCATCGCCTGCCAAGGCTAAGAAGGCGAAGGAACAAGCTCCGGTCGGACCGACTGTAGA CAAGGCGGTTCGTGCTAAGACTGTGCTTGCCGCTAATATTCTTAAAGAGGGTGCTGAGCC CTCCATTCGTCCTGATTCTGAGTATCCTACCTGGCTTTTCCCGCTCCTCAATCGTCCCCT TCCCCTCAGTGAGCTCGATCGTCTCAACCCTGAGACCATGACCATGCCTGAGCTTCAGCG TTTTGTGAAGCTTGACAACCGCAGGCGTATCAAGGAGAACAACACTGTAAAGTCTAAGTC ATGAGGCGACACTGCTCATCTCCTATCAGCTCCGTGCTCAATATTAACGGAGTTATCAGA AAGCTGCGTTCCTTCATTGTCAGCTTTGTACTGCGTCTGGACTTGCCGAAACTGTATGAT CTACATAGGGGCCTTATTACAGCATGGGACTCTCAGCAATTGTGGACCTAGAACTTGTTG ATTAGTGCCACATGGCAAGCCAATGTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3MHJ5 |
Definition |
sp|Q3MHJ5|RM54_BOVIN 39S ribosomal protein L54, mitochondrial OS=Bos taurus |
Align length |
65 |
Score (bit) |
45.1 |
E-value |
0.0002 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921340|Adiantum capillus-veneris mRNA, clone: YMU001_000148_F09. (507 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q3MHJ5|RM54_BOVIN 39S ribosomal protein L54, mitochondrial OS... 45 2e-04 sp|Q9CPW3|RM54_MOUSE 39S ribosomal protein L54, mitochondrial OS... 43 7e-04 sp|Q1LXI5|RM54_DANRE 39S ribosomal protein L54, mitochondrial OS... 43 7e-04 sp|P36532|RM37_YEAST 54S ribosomal protein L37, mitochondrial OS... 42 0.001 sp|Q6P161|RM54_HUMAN 39S ribosomal protein L54, mitochondrial OS... 42 0.002 sp|Q9Y7U8|RM37_SCHPO 60S ribosomal protein L37, mitochondrial OS... 37 0.069 sp|Q05672|RBS1_YEAST RNA-binding suppressor of PAS kinase protei... 31 3.9 sp|Q5HYC2|K2026_HUMAN Uncharacterized protein KIAA2026 OS=Homo s... 30 4.9 sp|Q01206|POL1_BAYMJ Genome polyprotein 1 OS=Barley yellow mosai... 30 6.5 sp|Q04574|POL1_BAYMG Genome polyprotein 1 OS=Barley yellow mosai... 30 6.5 sp|Q68667|GL_HCMV1 Glycoprotein L OS=Human cytomegalovirus (stra... 30 6.5
>sp|Q3MHJ5|RM54_BOVIN 39S ribosomal protein L54, mitochondrial OS=Bos taurus GN=MRPL54 PE=1 SV=1 Length = 138
Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/65 (36%), Positives = 35/65 (53%) Frame = +2
Query: 86 LAANILKEGAEPSIRPDSEYPTWLFPLLNRPLPLSELDRLNPETMTMPELQRFVKLDNRR 265 + NI KEG + ++PDSEYP WLF + P +L+ L+PET L R + Sbjct: 73 MGVNIYKEGQDVVLKPDSEYPEWLFQM--NVGPPKKLEELDPETREYWRLLRKHNIWRHN 130
Query: 266 RIKEN 280 R+ +N Sbjct: 131 RLSKN 135
>sp|Q9CPW3|RM54_MOUSE 39S ribosomal protein L54, mitochondrial OS=Mus musculus GN=Mrpl54 PE=2 SV=1 Length = 135
Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/65 (35%), Positives = 35/65 (53%) Frame = +2
Query: 86 LAANILKEGAEPSIRPDSEYPTWLFPLLNRPLPLSELDRLNPETMTMPELQRFVKLDNRR 265 + NI KEG + +++ DSEYPTWLF + P +L+ L PE+ L R + Sbjct: 70 MGVNIYKEGQDVALKADSEYPTWLFQV--NLGPPKKLEELEPESREYWRLLRKQNIWRHN 127
Query: 266 RIKEN 280 R+ +N Sbjct: 128 RLSKN 132
>sp|Q1LXI5|RM54_DANRE 39S ribosomal protein L54, mitochondrial OS=Danio rerio GN=mrpl54 PE=2 SV=2 Length = 135
Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Frame = +2
Query: 47 GPTV--DKAVRAKTVLAANILKEGAEPSIRPDSEYPTWLFPLLNRPLPLSELDRLNPET 217 GP V D A + N+ K+G +P+I+P EYP WLF L P+ +L+ L P++ Sbjct: 55 GPEVCKDPAKLCTYAVGVNVFKQGEDPTIKPKDEYPEWLFQL--NLGPVKQLNELEPDS 111
>sp|P36532|RM37_YEAST 54S ribosomal protein L37, mitochondrial OS=Saccharomyces cerevisiae GN=MRPL37 PE=1 SV=2 Length = 105
Score = 42.4 bits (98), Expect = 0.001 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Frame = +2
Query: 50 PTVDKAVR---AKTVLAANILKEGAEPSIRPDSEYPTWLFPLLNRPLPLSELDRLNPETM 220 PTV V A T L NI K G + D EYP WL+ +L+ + E +PE Sbjct: 21 PTVKSVVSSCPAGTSLNLNIWKSGKDAVALEDKEYPNWLWSVLDSD-HVVEHAAEDPEGQ 79
Query: 221 TMPELQRFVKLDNRRRIKENN 283 + + ++ ++ NR+RIK+NN Sbjct: 80 ALLKRRKNIRKANRQRIKQNN 100
>sp|Q6P161|RM54_HUMAN 39S ribosomal protein L54, mitochondrial OS=Homo sapiens GN=MRPL54 PE=1 SV=1 Length = 138
Score = 41.6 bits (96), Expect = 0.002 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = +2
Query: 86 LAANILKEGAEPSIRPDSEYPTWLFPL-LNRPLPLSELD 199 + NI KEG + ++PD+EYP WLF + L P L ELD Sbjct: 73 MGVNIYKEGQDVPLKPDAEYPEWLFEMNLGPPKTLEELD 111
>sp|Q9Y7U8|RM37_SCHPO 60S ribosomal protein L37, mitochondrial OS=Schizosaccharomyces pombe GN=mrpl37 PE=2 SV=1 Length = 139
Score = 36.6 bits (83), Expect = 0.069 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = +2
Query: 56 VDKAVRAKTVLAANILKE------GAEPSIRPDSEYPTWLFPLLNRPLPLSELDR 202 V +VL ILK G +P R D EYP WL+ LL+ P P S+ R Sbjct: 68 VANKTHTSSVLPGTILKGLCIKAGGVDPVAREDHEYPEWLWSLLDEPAPNSKTAR 122
>sp|Q05672|RBS1_YEAST RNA-binding suppressor of PAS kinase protein 1 OS=Saccharomyces cerevisiae GN=RBS1 PE=1 SV=1 Length = 457
Score = 30.8 bits (68), Expect = 3.9 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -1
Query: 144 YSESGRMEGSAPSLRILAASTVLARTALSTVGPTGACSF 28 Y+ +G G APS ++ +TV + + P G+CSF Sbjct: 319 YNPAGPAPGPAPSPMVMGNNTVFMNPYMYNMNPQGSCSF 357
>sp|Q5HYC2|K2026_HUMAN Uncharacterized protein KIAA2026 OS=Homo sapiens GN=KIAA2026 PE=2 SV=1 Length = 1278
Score = 30.4 bits (67), Expect = 4.9 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = +2
Query: 167 LNRPLPLSELDRLNPETMTMPELQRFVKLDNRRRIKENNTVKSKS*GDTAHLLSAPCSIL 346 +N P +EL L+ + F L N++ + + + S G T H SAP ++ Sbjct: 976 VNTNKPQTELSSLSTSPGKITNTSNFASLPNQQALVKTPSYSSAPGGTTIHTASAPSNVT 1035
Query: 347 ----TELSESCV 370 ++ SE C+ Sbjct: 1036 SLVGSQFSEPCI 1047
>sp|Q01206|POL1_BAYMJ Genome polyprotein 1 OS=Barley yellow mosaic virus (strain Japanese II-1) PE=3 SV=1 Length = 2410
Score = 30.0 bits (66), Expect = 6.5 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -3
Query: 205 ETIELTEGKGTIEEREKPGRILRIRTNGGLSTLFKNISGKHSL--STNRLV 59 + +++ GKG + E I+ R NGGL + +N S + L + N+LV Sbjct: 2284 QVMQIDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLV 2334
>sp|Q04574|POL1_BAYMG Genome polyprotein 1 OS=Barley yellow mosaic virus (isolate Germany) PE=3 SV=1 Length = 2412
Score = 30.0 bits (66), Expect = 6.5 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -3
Query: 205 ETIELTEGKGTIEEREKPGRILRIRTNGGLSTLFKNISGKHSL--STNRLV 59 + +++ GKG + E I+ R NGGL + +N S + L + N+LV Sbjct: 2286 QVMQIDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLV 2336
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RFF2 |
Definition |
tr|A9RFF2|A9RFF2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
88 |
Score (bit) |
102.0 |
E-value |
8.0e-21 |
Report |
|