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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921347
Clone id YMU001_000148_G04
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGCAGATTTCTTGATGAAGTGTTGTTGGAATGCAGACCACATAAGTCAGTTGAAACATC
ATAAACTTCCTGGAATGTGGTTCGTCACGGATTAGGTATACAAGCATGGCCACACTGGGA
ATAGACTCCCACTAAAGAAGTTTTCTAATTACAACTGTGAGGCCATGGCGTTTTTCGCTT
ATAACTCTTACAGAGAGTTGATTTGGCAATTCTTTTCTTACCAAATGGTCAAGCTTGTGT
GAGCAGATTGGTGACCTTGGTCATGGCCTTTGAAACACATCCACATGATAGTGGCCACGG
CCCACAAGGATAATCGGAGTTTGCATTGGCTTGAATGCAGATGGAGAGGCAACCCATGGG
TACTTTGAGCTACCAATGGCCATCATGGGCTCGAGTTATATTCTTGGCTGGCTTCAGGTC
AATGGTAATGGCCTGTAGTTAAATGTACTGA
■■Homology search results ■■ -
sp_hit_id Q9ERK0
Definition sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus
Align length 80
Score (bit) 31.2
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921347|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_G04.
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-prot...    31   2.2  
sp|Q89LP2|METN_BRAJA Methionine import ATP-binding protein metN ...    30   3.6  
sp|Q5NN77|KUP_ZYMMO Probable potassium transport system protein ...    30   4.8  
sp|Q8K592|AMHR2_MOUSE Anti-Muellerian hormone type-2 receptor OS...    29   8.2  

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein
           kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2
          Length = 786

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
 Frame = -2

Query: 255 VTNLLTQA*PFGKKRIAKSTLCKSYKRKTPW--------PHSCN*KTSLVGVYSQCGHAC 100
           +  +LTQ  PF  ++     + K  K   P         P +C    SL+G+  +C HA 
Sbjct: 213 IWGVLTQKKPFADEKNILHIMMKVVKGHRPELPPICRPRPRAC---ASLIGLMQRCWHA- 268

Query: 99  IPNP*RTTFQEVYDVSTDLC 40
                R TFQE+   + DLC
Sbjct: 269 -DPQVRPTFQEITSETEDLC 287


>sp|Q89LP2|METN_BRAJA Methionine import ATP-binding protein metN
           OS=Bradyrhizobium japonicum GN=metN PE=3 SV=1
          Length = 346

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = -3

Query: 341 SAFKPMQTPIILVGRGHY----HV-DVFQRP*PRSPICSHKLDHLVRKELPNQLSVRVIS 177
           S  + +   ++++  GH     HV D+F  P  + PI    L  +V   LP  L+ R++S
Sbjct: 204 SVVRQLAREVVVLDAGHVVESGHVADIFTHP--KHPITQSFLAEVVGDSLPVSLASRIVS 261

Query: 176 EKRHGLTVVIR 144
           E   G   VIR
Sbjct: 262 EPSAGGQAVIR 272


>sp|Q5NN77|KUP_ZYMMO Probable potassium transport system protein kup
           OS=Zymomonas mobilis GN=kup PE=3 SV=1
          Length = 652

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 16/63 (25%)
 Frame = -1

Query: 361 THGLPLHLHSSQCKLRLSLWAVATI-----------MWMCFKGH-----DQGHQSAHTSL 230
           ++G+P H HS +  L+LSL A+  +           +  CFKGH     D  H     SL
Sbjct: 20  SYGVPGHSHSDKDLLKLSLGAIGIVFGDIGTSPLYALKECFKGHHQLPVDDFHIYGLVSL 79

Query: 229 TIW 221
             W
Sbjct: 80  IFW 82


>sp|Q8K592|AMHR2_MOUSE Anti-Muellerian hormone type-2 receptor
           OS=Mus musculus GN=Amhr2 PE=2 SV=2
          Length = 568

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 360 PMGCLSICIQANANSDYPCGPWPLSC 283
           P GC   C+ A A++ +PC P   SC
Sbjct: 517 PQGCPENCLSAPASAVFPCRPQQSSC 542
tr_hit_id B4MVL9
Definition tr|B4MVL9|B4MVL9_DROWI GK15035 OS=Drosophila willistoni
Align length 39
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921347|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_G04.
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4MVL9|B4MVL9_DROWI GK15035 OS=Drosophila willistoni GN=GK150...    35   1.4  
tr|B4KY49|B4KY49_DROMO GI11907 OS=Drosophila mojavensis GN=GI119...    35   2.5  
tr|B4IYZ0|B4IYZ0_DROGR GH17013 OS=Drosophila grimshawi GN=GH1701...    35   2.5  
tr|B8M5U9|B8M5U9_9EURO tRNA-specific adenosine deaminase, putati...    34   3.2  
tr|A0LDM6|A0LDM6_MAGSM Putative uncharacterized protein OS=Magne...    33   9.3  

>tr|B4MVL9|B4MVL9_DROWI GK15035 OS=Drosophila willistoni GN=GK15035
            PE=4 SV=1
          Length = 3390

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 393  RAHDGHW*LKVPMGCLSICIQANANSDYPCGPWPLSCGC 277
            +   GHW L   +GCL     A+ +  + C PW   C C
Sbjct: 1194 KCKSGHWNLTQGVGCLDCQCDAHGSRGHECNPWTGQCDC 1232


>tr|B4KY49|B4KY49_DROMO GI11907 OS=Drosophila mojavensis GN=GI11907
           PE=4 SV=1
          Length = 491

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 22/86 (25%), Positives = 43/86 (50%)
 Frame = -3

Query: 287 HVDVFQRP*PRSPICSHKLDHLVRKELPNQLSVRVISEKRHGLTVVIRKLL*WESIPSVA 108
           H D+  +P  R+ +   + D  +R+EL  ++    ++ KR G   ++R +     +   A
Sbjct: 208 HSDLALKPMQRT-LSKSRNDRQLRQELETEVGNIYLTTKRQGAVEMLRDVSSTLFVIVCA 266

Query: 107 MLVYLIRDEPHSRKFMMFQLTYVVCI 30
            +VY+  DE H+ KF+   L+   C+
Sbjct: 267 AIVYVAEDEQHTAKFIDPVLSIFSCV 292


>tr|B4IYZ0|B4IYZ0_DROGR GH17013 OS=Drosophila grimshawi GN=GH17013
           PE=4 SV=1
          Length = 505

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 21/86 (24%), Positives = 43/86 (50%)
 Frame = -3

Query: 287 HVDVFQRP*PRSPICSHKLDHLVRKELPNQLSVRVISEKRHGLTVVIRKLL*WESIPSVA 108
           H D+  +P  R+ +   + D  +R++L +++     + KR G   ++R +     +   A
Sbjct: 210 HSDLALKPMQRT-LSKSRNDRQLRQDLESEMDKAFFTTKRQGAVEMLRDVSSTLFVIVCA 268

Query: 107 MLVYLIRDEPHSRKFMMFQLTYVVCI 30
            +VY+  DE H+ KF+   L+   C+
Sbjct: 269 AIVYVAEDEQHTAKFIDPVLSIFSCV 294


>tr|B8M5U9|B8M5U9_9EURO tRNA-specific adenosine deaminase, putative
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_033230 PE=4
           SV=1
          Length = 1257

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = -3

Query: 395 LEPMMAIGSSKYPWVASPSAFKPMQTPIILVGRGHYHVDVFQRP*PRSPICSHKLDHLVR 216
           +E  MA      PWV SP+ ++    PI+L GR H+ V    R  P    C    +  + 
Sbjct: 167 MELCMAEQEDPTPWVISPATYEKGDQPILLDGRAHFSVLGVVRRKP----CRADAEPTLS 222

Query: 215 KELPNQLSVRVIS 177
           K   ++L++R ++
Sbjct: 223 KSCSDKLALRQVT 235


>tr|A0LDM6|A0LDM6_MAGSM Putative uncharacterized protein
           OS=Magnetococcus sp. (strain MC-1) GN=Mmc1_3584 PE=4
           SV=1
          Length = 152

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 319 VCIGLNADGEATHGYFELPMAIMGSSYILGWLQVNGN 429
           +C G+    E  H     P+AI+G SYI  W  +NG+
Sbjct: 98  ICGGMKTKAEMKHLDLSPPVAIIGGSYIAQWKTLNGS 134