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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921360
Clone id YMU001_000148_H09
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000148_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGAGTTAGTTGATCCCTACTGCAGAATGAGAAAATACAGGTTGGTAAATTGCATATGGC
GCAACGACACACTTTGAACAAGAGCTCCCACAATAATTCCACATCCATGCCCCCTTCCGG
TAATCGAACTCGGGTCCTTCTGACCACAATTACACTACTTGACCCATAATTAGGCAGACG
ATTACACTAATTACCCCTACCGTAATCAGGATATGGAAATCCTCTCTATAATCTTCGTTT
GCACCTCAATAATCCTCAGCTCAGAGATTGCCAATTCCTGCAGCCTCAAATTGCATGCCT
GCATCCATCCAAAGCTCTCTTAGCCCGCACTCTTTCATCATCCTCTCCCATTGCCTCGCA
TACGCAGGAAGCCATTTCTTGAGCGTCGGTCCCGGGCCATGAACCACAAAGTCTCCTGGT
TGAAACAA
■■Homology search results ■■ -
sp_hit_id Q6MDC0
Definition sp|Q6MDC0|SYFA_PARUW Phenylalanyl-tRNA synthetase alpha chain OS=Protochlamydia amoebophila (strain UWE25)
Align length 55
Score (bit) 31.6
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921360|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_H09.
         (428 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6MDC0|SYFA_PARUW Phenylalanyl-tRNA synthetase alpha chain OS...    32   1.4  
sp|P27171|VGLB_MCMVS Glycoprotein B OS=Murine cytomegalovirus (s...    29   9.1  
sp|Q8YBA4|NORD_BRUME Protein norD OS=Brucella melitensis GN=norD...    29   9.1  

>sp|Q6MDC0|SYFA_PARUW Phenylalanyl-tRNA synthetase alpha chain
           OS=Protochlamydia amoebophila (strain UWE25) GN=pheS
           PE=3 SV=1
          Length = 346

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 212 YGNPLYNLRLHLNNPQLRDCQFLQPQIACLHPSKALLARTLSSSSPIASHTQEAI 376
           Y +P   LR H +N Q R  +  +P I  + P K     T+++ S +  H  EA+
Sbjct: 164 YISPHVLLRTHTSNIQARAMELNRPPIRIIAPGKVYRNETITARSHVFFHQVEAV 218


>sp|P27171|VGLB_MCMVS Glycoprotein B OS=Murine cytomegalovirus
           (strain Smith) GN=GB PE=4 SV=2
          Length = 928

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 122 YRKGAWMWNYCGSSCSKCVV 63
           Y KGAW W Y  S    CVV
Sbjct: 248 YHKGAWTWRYTESCNMNCVV 267


>sp|Q8YBA4|NORD_BRUME Protein norD OS=Brucella melitensis GN=norD
           PE=3 SV=1
          Length = 633

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 134 PEFDYRKGAWMWNYC 90
           PE+DYRKGA++ N+C
Sbjct: 347 PEWDYRKGAYLPNHC 361
tr_hit_id B3M7P6
Definition tr|B3M7P6|B3M7P6_DROAN GF10786 OS=Drosophila ananassae
Align length 103
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921360|Adiantum capillus-veneris mRNA, clone:
YMU001_000148_H09.
         (428 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3M7P6|B3M7P6_DROAN GF10786 OS=Drosophila ananassae GN=GF1078...    34   3.2  
tr|B4PH02|B4PH02_DROYA GE22527 OS=Drosophila yakuba GN=GE22527 P...    34   4.2  
tr|B4IU88|B4IU88_DROYA GE22787 OS=Drosophila yakuba GN=GE22787 P...    34   4.2  
tr|Q8Y305|Q8Y305_RALSO Probable lipoprotein OS=Ralstonia solanac...    33   5.5  
tr|B5SED6|B5SED6_RALSO Lipoprotein OS=Ralstonia solanacearum IPO...    33   7.2  
tr|B5S7Q1|B5S7Q1_RALSO Lipoprotein OS=Ralstonia solanacearum GN=...    33   7.2  
tr|Q9VVW2|Q9VVW2_DROME CG3797 OS=Drosophila melanogaster GN=CG37...    33   7.2  
tr|B4QQC2|B4QQC2_DROSI GD12307 OS=Drosophila simulans GN=GD12307...    33   7.2  
tr|B4N4R4|B4N4R4_DROWI GK12526 OS=Drosophila willistoni GN=GK125...    33   7.2  
tr|B4IFZ1|B4IFZ1_DROSE GM14898 OS=Drosophila sechellia GN=GM1489...    33   7.2  

>tr|B3M7P6|B3M7P6_DROAN GF10786 OS=Drosophila ananassae GN=GF10786
           PE=4 SV=1
          Length = 637

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
 Frame = -1

Query: 407 VVHGPGPTLKKWLPAYARQ----WE----RMMKECGLRELWMDAGMQFEAAGIGNL*AED 252
           +V  PG      +  +A Q    WE    R ++  GLRE W+D GM FEA  +       
Sbjct: 43  LVESPGNHSVTLISPHAAQDGVDWEIPRIRELRIEGLRENWLDMGMSFEAEEM------- 95

Query: 251 Y*GANEDYREDFHILITVGVISVIVCLIMGQVV*LWSEGPEFD 123
                +   E F  LI  G  +V + L   QV  L + G  FD
Sbjct: 96  ---HAQSVMERFTRLIYAGTTNVDILLSDSQVRKLLTSGERFD 135


>tr|B4PH02|B4PH02_DROYA GE22527 OS=Drosophila yakuba GN=GE22527 PE=4
           SV=1
          Length = 636

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = -1

Query: 326 GLRELWMDAGMQFEAAGIGNL*AEDY*GANEDYREDFHILITVGVISVIVCLIMGQVV*L 147
           GLRE W+D GM FEA  +            +   E F  LI  G  +V + L   QV  L
Sbjct: 78  GLRENWLDMGMSFEAEEM----------RAQSVMERFTRLIYAGTTNVDILLSDSQVRKL 127

Query: 146 WSEGPEFD 123
            + G +FD
Sbjct: 128 LTSGEKFD 135


>tr|B4IU88|B4IU88_DROYA GE22787 OS=Drosophila yakuba GN=GE22787 PE=4
           SV=1
          Length = 636

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = -1

Query: 326 GLRELWMDAGMQFEAAGIGNL*AEDY*GANEDYREDFHILITVGVISVIVCLIMGQVV*L 147
           GLRE W+D GM FEA  +            +   E F  LI  G  +V + L   QV  L
Sbjct: 78  GLRENWLDMGMSFEAEEM----------RAQSVMERFTRLIYAGTTNVDILLSDSQVRKL 127

Query: 146 WSEGPEFD 123
            + G +FD
Sbjct: 128 LTSGEKFD 135


>tr|Q8Y305|Q8Y305_RALSO Probable lipoprotein OS=Ralstonia
           solanacearum GN=RSc0176 PE=4 SV=1
          Length = 299

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 401 HGPGPTLKKWLPAYARQWERMMKECGL-RELWMDAGMQFEAAGIGNL 264
           H   PT+ +WL AYA QWE    E G  R+ ++DA +      I NL
Sbjct: 205 HPDKPTVMQWLTAYADQWEHPPGERGARRDAYLDASVDVSVT-IANL 250


>tr|B5SED6|B5SED6_RALSO Lipoprotein OS=Ralstonia solanacearum
           IPO1609 GN=RSIPO_00230 PE=4 SV=1
          Length = 324

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 401 HGPGPTLKKWLPAYARQWERMMKECGL-RELWMDAGM 294
           H   PT+ +WL AYA QWE    E G  R+ ++DA +
Sbjct: 229 HPDKPTVMQWLTAYADQWEHPPGERGARRDAYLDASV 265


>tr|B5S7Q1|B5S7Q1_RALSO Lipoprotein OS=Ralstonia solanacearum
           GN=RSMK03949 PE=4 SV=1
          Length = 324

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 401 HGPGPTLKKWLPAYARQWERMMKECGL-RELWMDAGM 294
           H   PT+ +WL AYA QWE    E G  R+ ++DA +
Sbjct: 229 HPDKPTVMQWLTAYADQWEHPPGERGARRDAYLDASV 265


>tr|Q9VVW2|Q9VVW2_DROME CG3797 OS=Drosophila melanogaster GN=CG3797
           PE=1 SV=1
          Length = 636

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = -1

Query: 326 GLRELWMDAGMQFEAAGIGNL*AEDY*GANEDYREDFHILITVGVISVIVCLIMGQVV*L 147
           GLRE W+D GM FEA  +            +   E F  LI  G  +V + L   QV  L
Sbjct: 78  GLRENWLDMGMSFEAEEM----------RAQSVMERFTRLIYAGTTNVDILLSDPQVRKL 127

Query: 146 WSEGPEFD 123
            + G +FD
Sbjct: 128 LTSGEKFD 135


>tr|B4QQC2|B4QQC2_DROSI GD12307 OS=Drosophila simulans GN=GD12307
           PE=4 SV=1
          Length = 636

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = -1

Query: 326 GLRELWMDAGMQFEAAGIGNL*AEDY*GANEDYREDFHILITVGVISVIVCLIMGQVV*L 147
           GLRE W+D GM FEA  +            +   E F  LI  G  +V + L   QV  L
Sbjct: 78  GLRENWLDMGMSFEAEEM----------RAQSVMERFTRLIYAGTTNVDILLSDPQVRKL 127

Query: 146 WSEGPEFD 123
            + G +FD
Sbjct: 128 LTSGEKFD 135


>tr|B4N4R4|B4N4R4_DROWI GK12526 OS=Drosophila willistoni GN=GK12526
           PE=4 SV=1
          Length = 646

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = -1

Query: 344 RMMKECGLRELWMDAGMQFEAAGIGNL*AEDY*GANEDYREDFHILITVGVISVIVCLIM 165
           R ++  GL+E W+D GM +EA  +            +   E F  LI  G  +V + L  
Sbjct: 74  REIRVDGLKENWLDMGMSYEAEDM----------RAQSVMERFTRLIYAGTTNVDLLLGD 123

Query: 164 GQVV*LWSEGPEFD 123
           GQV  L + G  FD
Sbjct: 124 GQVKKLLTSGERFD 137


>tr|B4IFZ1|B4IFZ1_DROSE GM14898 OS=Drosophila sechellia GN=GM14898
           PE=4 SV=1
          Length = 636

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = -1

Query: 326 GLRELWMDAGMQFEAAGIGNL*AEDY*GANEDYREDFHILITVGVISVIVCLIMGQVV*L 147
           GLRE W+D GM FEA  +            +   E F  LI  G  +V + L   QV  L
Sbjct: 78  GLRENWLDMGMSFEAEEM----------RAQSVMERFTRLIYAGTTNVDILLSDPQVRKL 127

Query: 146 WSEGPEFD 123
            + G +FD
Sbjct: 128 LTSGEKFD 135