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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921369
Clone id YMU001_000149_A08
Library
Length 192
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCTGTGTGCACCTTGACAAGTGTAATGCTCTTGTCATCAAGCACACTCCTGATAAAATGA
TACTTCACCTCTATGTGCTTTGTCTTGGCATGAAAAACAGGATTCCTTGCAAGCGTAATA
GCACTCTGACTATCACAGTGTAGCACAGGAACCGGTGACTTAATGCCAAGCTCTTCTACC
AAACGCATGAGC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 63
Score (bit) 74.7
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921369|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_A08.
         (192 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    75   1e-13
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    46   7e-05
sp|P26751|EF1A_PYRWO Elongation factor 1-alpha OS=Pyrococcus woe...    30   5.0  
sp|Q8U152|EF1A_PYRFU Elongation factor 1-alpha OS=Pyrococcus fur...    30   5.0  
sp|Q08CY4|TELO2_XENTR Telomere length regulation protein TEL2 ho...    29   8.5  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 31/63 (49%), Positives = 51/63 (80%)
 Frame = -2

Query: 191  LMRLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
            L R ++ELG+     V++CDSQSAI L++N ++HA+TKHI+V+YH+IR ++DD+S+ ++K
Sbjct: 1237 LKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLK 1296

Query: 11   VHT 3
            + T
Sbjct: 1297 IST 1299


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = -2

Query: 182  LVEELGIKSPVPV-LHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVKVH 6
            L+  + IK   P+ ++ D+Q  I++A NP  H + KHI++KYHF R  + +  I L  + 
Sbjct: 1314 LLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIP 1373

Query: 5    T 3
            T
Sbjct: 1374 T 1374


>sp|P26751|EF1A_PYRWO Elongation factor 1-alpha OS=Pyrococcus woesei
           GN=tuf PE=3 SV=1
          Length = 430

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 125 SAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
           +AIT+  +PV HA T  + V++  + + LD K+  +V+
Sbjct: 336 TAITVGYSPVLHAHTAQVPVRFEQLLAKLDPKTGNIVE 373


>sp|Q8U152|EF1A_PYRFU Elongation factor 1-alpha OS=Pyrococcus
           furiosus GN=tuf PE=3 SV=1
          Length = 428

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 125 SAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
           +AIT+  +PV HA T  + V++  + + LD K+  +V+
Sbjct: 334 TAITVGYSPVLHAHTAQVPVRFEQLLAKLDPKTGNIVE 371


>sp|Q08CY4|TELO2_XENTR Telomere length regulation protein TEL2
           homolog OS=Xenopus tropicalis GN=telo2 PE=2 SV=1
          Length = 829

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
 Frame = +3

Query: 33  VIKHTPDKMILHL---YVLCLGMKNR---IPCKRNSTLTITV*HRN 152
           V+KH+P   +LH+    ++CLG+ N+     CK++  +++T   RN
Sbjct: 343 VVKHSPHPQLLHVSRCLLICLGLLNKQEIESCKQDLLVSLTSGARN 388
tr_hit_id B8YLY6
Definition tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
Align length 63
Score (bit) 78.6
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921369|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_A08.
         (192 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    79   1e-13
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    79   1e-13
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    79   1e-13
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    79   1e-13
tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE...    76   1e-12
tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase ...    75   2e-12
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE...    75   2e-12
tr|A5BML3|A5BML3_VITVI Putative uncharacterized protein OS=Vitis...    72   2e-11
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis...    72   2e-11
tr|A5BET6|A5BET6_VITVI Putative uncharacterized protein OS=Vitis...    71   3e-11
tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarp...    70   4e-11
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    70   4e-11
tr|A5BJT3|A5BJT3_VITVI Putative uncharacterized protein OS=Vitis...    70   4e-11
tr|A5BJ23|A5BJ23_VITVI Putative uncharacterized protein OS=Vitis...    70   4e-11
tr|A5BEP3|A5BEP3_VITVI Putative uncharacterized protein OS=Vitis...    70   4e-11
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5CAL2|A5CAL2_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BHI5|A5BHI5_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BE96|A5BE96_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5BC16|A5BC16_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    70   5e-11

>tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
            PE=4 SV=1
          Length = 1305

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 33/63 (52%), Positives = 49/63 (77%)
 Frame = -2

Query: 191  LMRLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
            + RL+EELG K     ++CDSQSA+ +ARNP FH++TKHI V+YHF+R V+++ S+ + K
Sbjct: 1214 MQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQK 1273

Query: 11   VHT 3
            +HT
Sbjct: 1274 IHT 1276


>tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
            PE=4 SV=1
          Length = 1305

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 33/63 (52%), Positives = 49/63 (77%)
 Frame = -2

Query: 191  LMRLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
            + RL+EELG K     ++CDSQSA+ +ARNP FH++TKHI V+YHF+R V+++ S+ + K
Sbjct: 1214 MQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQK 1273

Query: 11   VHT 3
            +HT
Sbjct: 1274 IHT 1276


>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
            PE=4 SV=1
          Length = 1305

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 33/63 (52%), Positives = 49/63 (77%)
 Frame = -2

Query: 191  LMRLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
            + RL+EELG K     ++CDSQSA+ +ARNP FH++TKHI V+YHF+R V+++ S+ + K
Sbjct: 1214 MQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQK 1273

Query: 11   VHT 3
            +HT
Sbjct: 1274 IHT 1276


>tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
            PE=4 SV=1
          Length = 1305

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 33/63 (52%), Positives = 49/63 (77%)
 Frame = -2

Query: 191  LMRLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
            + RL+EELG K     ++CDSQSA+ +ARNP FH++TKHI V+YHF+R V+++ S+ + K
Sbjct: 1214 MQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQK 1273

Query: 11   VHT 3
            +HT
Sbjct: 1274 IHT 1276


>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4
            SV=1
          Length = 1305

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 32/61 (52%), Positives = 47/61 (77%)
 Frame = -2

Query: 185  RLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVKVH 6
            RL+EELG K     ++CDS SA+ +ARNP FH++TKHI V+YHF+R V+++ S+ + K+H
Sbjct: 1216 RLLEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIH 1275

Query: 5    T 3
            T
Sbjct: 1276 T 1276


>tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase
           homolog (Fragment) OS=Arabidopsis thaliana PE=4 SV=1
          Length = 112

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 31/63 (49%), Positives = 51/63 (80%)
 Frame = -2

Query: 191 LMRLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
           L R ++ELG+     V++CDSQSAI L++N ++HA+TKHI+V+YH+IR ++DD+S+ ++K
Sbjct: 21  LKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLK 80

Query: 11  VHT 3
           + T
Sbjct: 81  IST 83


>tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE=4
            SV=1
          Length = 1298

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = -2

Query: 191  LMRLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
            L  L+EELG K     L CDSQSA+ LARNP FH++TKHI V+YHFIR  + + ++ L K
Sbjct: 1207 LKMLLEELGHKQEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQK 1266

Query: 11   VHT 3
            +HT
Sbjct: 1267 IHT 1269


>tr|A5BML3|A5BML3_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_008416 PE=4 SV=1
          Length = 1001

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 32/57 (56%), Positives = 45/57 (78%)
 Frame = -2

Query: 179  VEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVKV 9
            ++ELG K  + +LH DSQSAI LA+N VFH+K+KHI+ KYHFIR +++DK + L K+
Sbjct: 915  LDELGKKQEMGILHSDSQSAIFLAKNSVFHSKSKHIQTKYHFIRYLVEDKLVILEKI 971


>tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_008497 PE=4 SV=1
          Length = 1149

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 32/57 (56%), Positives = 45/57 (78%)
 Frame = -2

Query: 179  VEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVKV 9
            ++ELG K  + +LH DSQSAI LA+N VFH+K+KHI+ KYHFIR +++DK + L K+
Sbjct: 1063 LDELGKKQEMGILHSDSQSAIFLAKNSVFHSKSKHIQTKYHFIRYLVEDKLVILEKI 1119


>tr|A5BET6|A5BET6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013728 PE=4 SV=1
          Length = 174

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 28/63 (44%), Positives = 49/63 (77%)
 Frame = -2

Query: 191 LMRLVEELGIKSPVPVLHCDSQSAITLARNPVFHAKTKHIEVKYHFIRSVLDDKSITLVK 12
           + + ++ELG++  + +L+CDSQS+I L++NP FH+++KHI+V+YH+IR  L+ K   + K
Sbjct: 81  MKKFLQELGLQQEMYLLYCDSQSSIHLSKNPTFHSRSKHIDVRYHWIRDALEIKLFCVEK 140

Query: 11  VHT 3
           +HT
Sbjct: 141 IHT 143